Wall clock time and date at job start Wed Apr 1 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46813 * 2 1 4 4 N 1.46498 * 109.47418 * 240.00237 * 2 1 3 5 5 C 1.34776 * 119.99934 * 84.99409 * 4 2 1 6 6 O 1.21276 * 120.00094 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99895 * 179.97438 * 5 4 2 8 8 O 1.42901 * 109.47279 * 180.02562 * 7 5 4 9 9 C 1.42900 * 114.00173 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.47324 * 180.02562 * 9 8 7 11 11 H 1.09003 * 110.67275 * 52.03540 * 10 9 8 12 12 C 1.54990 * 110.62247 * 175.00324 * 10 9 8 13 13 C 1.54811 * 102.09430 * 155.52787 * 12 10 9 14 14 C 1.54100 * 104.18899 * 339.12112 * 13 12 10 15 15 O 1.43751 * 107.28973 * 357.96840 * 14 13 12 16 16 C 1.52997 * 109.47266 * 120.00062 * 2 1 3 17 17 C 1.53040 * 109.46088 * 60.02763 * 16 2 1 18 18 C 1.53196 * 109.31204 * 178.60245 * 17 16 2 19 19 N 1.46922 * 108.76464 * 54.65818 * 18 17 16 20 20 C 1.36938 * 120.62805 * 126.36695 * 19 18 17 21 21 H 1.08007 * 119.99708 * 207.69793 * 20 19 18 22 22 C 1.38809 * 120.00592 * 27.68993 * 20 19 18 23 23 N 1.31624 * 119.99717 * 17.35858 * 22 20 19 24 24 Si 1.86796 * 120.00523 * 197.35426 * 22 20 19 25 25 H 1.48500 * 109.46929 * 59.99887 * 24 22 20 26 26 H 1.48494 * 109.47133 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47032 * 300.00301 * 24 22 20 28 28 C 1.46927 * 118.73977 * 306.38134 * 19 18 17 29 29 C 1.53051 * 109.46072 * 299.97703 * 16 2 1 30 30 H 1.09004 * 109.47287 * 299.99442 * 1 2 3 31 31 H 1.08999 * 109.47175 * 60.00142 * 1 2 3 32 32 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99841 * 264.99630 * 4 2 1 34 34 H 1.09005 * 109.47362 * 60.00211 * 7 5 4 35 35 H 1.09000 * 109.47373 * 300.00761 * 7 5 4 36 36 H 1.09002 * 109.46725 * 60.00481 * 9 8 7 37 37 H 1.09000 * 109.47487 * 300.00603 * 9 8 7 38 38 H 1.09002 * 110.90540 * 37.32658 * 12 10 9 39 39 H 1.09000 * 110.91016 * 273.72799 * 12 10 9 40 40 H 1.08996 * 110.49038 * 97.80011 * 13 12 10 41 41 H 1.09004 * 110.48880 * 220.31444 * 13 12 10 42 42 H 1.08993 * 109.88193 * 117.39152 * 14 13 12 43 43 H 1.09002 * 109.87949 * 238.54864 * 14 13 12 44 44 H 1.08997 * 109.46101 * 180.02562 * 16 2 1 45 45 H 1.08994 * 109.49873 * 298.56473 * 17 16 2 46 46 H 1.09001 * 109.49703 * 58.66676 * 17 16 2 47 47 H 1.09004 * 109.59641 * 294.86932 * 18 17 16 48 48 H 1.09004 * 109.58251 * 174.44041 * 18 17 16 49 49 H 0.96995 * 120.00079 * 179.97438 * 23 22 20 50 50 H 1.09006 * 109.58517 * 293.82254 * 28 19 18 51 51 H 1.08997 * 109.58700 * 173.39766 * 28 19 18 52 52 H 1.09003 * 109.49172 * 301.33597 * 29 16 2 53 53 H 1.08996 * 109.49777 * 61.39820 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4114 7 6 2.6500 -0.7283 -3.5874 8 8 2.6984 0.1900 -4.6812 9 6 3.1651 -0.3855 -5.9031 10 6 3.1761 0.6826 -6.9985 11 1 3.7180 1.5683 -6.6669 12 6 3.7956 0.1202 -8.3031 13 6 3.1607 1.0306 -9.3823 14 6 1.9053 1.6070 -8.6995 15 8 1.8287 1.0268 -7.3865 16 6 2.0400 -0.7212 1.2492 17 6 1.5304 -2.1643 1.2486 18 6 2.0715 -2.8932 2.4826 19 7 1.7086 -2.1259 3.6818 20 6 1.0448 -2.7250 4.7189 21 1 0.4027 -2.1386 5.3596 22 6 1.1969 -4.0857 4.9469 23 7 2.2104 -4.7333 4.4119 24 14 -0.0363 -4.9980 6.0127 25 1 -1.3896 -4.8840 5.4119 26 1 0.3482 -6.4296 6.0998 27 1 -0.0478 -4.4052 7.3743 28 6 2.0711 -0.7035 3.7469 29 6 1.5302 0.0007 2.4987 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2492 -1.6317 -1.1526 34 1 1.9779 -1.5508 -3.8325 35 1 3.6493 -1.1201 -3.3978 36 1 2.5037 -1.2007 -6.1966 37 1 4.1751 -0.7702 -5.7611 38 1 3.5076 -0.9203 -8.4534 39 1 4.8805 0.2247 -8.2952 40 1 3.8469 1.8315 -9.6577 41 1 2.8856 0.4465 -10.2606 42 1 1.9903 2.6908 -8.6213 43 1 1.0170 1.3433 -9.2735 44 1 3.1300 -0.7207 1.2492 45 1 0.4407 -2.1653 1.2741 46 1 1.8742 -2.6712 0.3470 47 1 3.1565 -2.9724 2.4139 48 1 1.6332 -3.8896 2.5397 49 1 2.3169 -5.6841 4.5715 50 1 3.1561 -0.6042 3.7814 51 1 1.6326 -0.2552 4.6384 52 1 1.8740 1.0351 2.4868 53 1 0.4405 -0.0203 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717985234.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:41 Heat of formation + Delta-G solvation = -137.116446 kcal Electronic energy + Delta-G solvation = -29963.082882 eV Core-core repulsion = 25834.174808 eV Total energy + Delta-G solvation = -4128.908074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.15654 -40.44757 -39.56581 -38.29473 -36.72948 -34.52998 -33.14484 -32.81115 -31.81996 -31.58512 -30.44212 -28.61454 -27.11406 -26.12555 -24.80774 -23.91827 -22.66008 -22.41346 -22.10781 -21.36050 -20.16973 -18.65273 -18.39097 -18.03265 -17.56523 -17.09971 -16.85388 -16.71295 -16.45254 -16.23960 -15.73429 -15.56908 -15.38460 -15.22867 -15.06101 -14.65687 -14.46649 -14.12989 -14.07314 -13.92722 -13.62524 -13.17322 -13.09454 -12.92683 -12.88576 -12.78130 -12.65955 -12.52092 -12.45753 -12.22917 -12.17699 -12.12377 -11.93192 -11.69151 -11.55102 -11.52226 -11.18073 -10.97200 -10.78511 -10.72753 -10.64883 -10.48766 -10.08752 -8.63889 -7.84853 -5.28710 1.48286 1.49965 1.56725 1.59769 1.81982 2.53381 2.87620 2.93318 3.29158 3.62951 3.71260 3.72869 3.86522 3.91258 3.93339 4.00069 4.07035 4.13650 4.17719 4.27693 4.30540 4.40892 4.41842 4.44917 4.52972 4.56343 4.58817 4.65571 4.74240 4.79984 4.81496 4.90129 4.93346 4.96743 4.98888 5.03943 5.06355 5.18649 5.20337 5.26898 5.30054 5.33511 5.46095 5.51802 5.60672 5.70264 5.84975 5.94239 6.08507 6.42490 6.58092 7.19005 7.25126 7.91164 8.41817 9.20995 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.001736 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.424761 B =16122.496037 C =16559.360128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.073 0.927 4 N -0.711 5.711 5 C 0.509 3.491 6 O -0.575 6.575 7 C 0.045 3.955 8 O -0.395 6.395 9 C 0.062 3.938 10 C 0.068 3.932 11 H 0.067 0.933 12 C -0.139 4.139 13 C -0.151 4.151 14 C 0.033 3.967 15 O -0.403 6.403 16 C -0.074 4.074 17 C -0.121 4.121 18 C 0.176 3.824 19 N -0.610 5.610 20 C -0.262 4.262 21 H 0.063 0.937 22 C -0.049 4.049 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.279 1.279 26 H -0.294 1.294 27 H -0.278 1.278 28 C 0.141 3.859 29 C -0.117 4.117 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.413 0.587 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.073 0.927 47 H -0.004 1.004 48 H 0.053 0.947 49 H 0.249 0.751 50 H 0.012 0.988 51 H 0.051 0.949 52 H 0.076 0.924 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 7.258 -27.128 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.091 0.909 4 N -0.365 5.365 5 C 0.296 3.704 6 O -0.454 6.454 7 C -0.034 4.034 8 O -0.315 6.315 9 C -0.014 4.014 10 C 0.011 3.989 11 H 0.085 0.915 12 C -0.177 4.177 13 C -0.188 4.188 14 C -0.043 4.043 15 O -0.323 6.323 16 C -0.093 4.093 17 C -0.160 4.160 18 C 0.050 3.950 19 N -0.333 5.333 20 C -0.393 4.393 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.204 1.204 28 C 0.015 3.985 29 C -0.156 4.156 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.251 0.749 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.014 0.986 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.030 0.970 51 H 0.070 0.930 52 H 0.094 0.906 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.735 8.102 -27.004 28.439 hybrid contribution -0.222 -1.146 0.861 1.451 sum 3.513 6.955 -26.142 27.279 Atomic orbital electron populations 1.22178 0.95133 1.02487 1.01784 1.20842 0.94249 0.96209 0.83350 0.90895 1.46005 1.66832 1.14803 1.08845 1.20873 0.77264 0.87019 0.85232 1.90698 1.51113 1.18133 1.85464 1.22343 1.03893 0.92167 0.84999 1.88016 1.87903 1.36786 1.18747 1.22819 1.00610 0.95413 0.82513 1.23324 0.83595 0.97259 0.94763 0.91501 1.23107 1.02037 1.00807 0.91744 1.22941 0.96547 1.00165 0.99170 1.23357 1.00052 0.97667 0.83249 1.88962 1.27785 1.81850 1.33710 1.21174 0.99905 0.95119 0.93106 1.22088 1.00604 0.95137 0.98190 1.20616 0.94935 0.94982 0.84472 1.44309 1.66884 1.06184 1.15961 1.19472 1.19175 0.92466 1.08150 0.91901 1.25714 0.98709 0.98977 1.01019 1.70169 1.29474 1.08694 1.49615 0.85406 0.79230 0.77228 0.78970 1.20537 1.22016 1.20382 1.21038 0.96086 0.84653 0.96683 1.21950 1.00961 0.98609 0.94120 0.90937 0.93712 0.91763 0.74900 0.87694 0.86951 0.91409 0.88667 0.89252 0.87857 0.89428 0.88808 0.92552 0.89174 0.91383 0.92422 0.90858 0.98597 0.92842 0.94147 0.97003 0.93033 0.90555 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 8.78 71.98 0.63 -3.60 16 2 C 0.16 4.24 2.40 44.99 0.11 4.35 16 3 H 0.07 2.17 7.58 -2.39 -0.02 2.15 16 4 N -0.71 -16.47 5.00 -442.55 -2.21 -18.68 16 5 C 0.51 13.52 7.87 87.66 0.69 14.21 16 6 O -0.58 -21.24 16.16 16.02 0.26 -20.98 16 7 C 0.05 0.83 6.42 71.23 0.46 1.29 16 8 O -0.40 -9.64 9.88 -129.01 -1.27 -10.91 16 9 C 0.06 0.97 5.68 71.98 0.41 1.38 16 10 C 0.07 1.13 3.63 31.27 0.11 1.24 16 11 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 12 C -0.14 -1.22 6.59 31.89 0.21 -1.01 16 13 C -0.15 -1.26 7.01 31.58 0.22 -1.04 16 14 C 0.03 0.48 7.70 72.35 0.56 1.04 16 15 O -0.40 -9.10 11.22 -148.98 -1.67 -10.78 16 16 C -0.07 -2.18 2.14 -10.76 -0.02 -2.21 16 17 C -0.12 -4.01 4.81 30.67 0.15 -3.87 16 18 C 0.18 8.01 5.31 86.36 0.46 8.47 16 19 N -0.61 -29.85 2.99 -699.08 -2.09 -31.94 16 20 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16 21 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 22 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 23 N -0.93 -54.22 11.19 21.65 0.24 -53.97 16 24 Si 0.96 44.44 29.59 68.60 2.03 46.47 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 C 0.14 5.70 6.52 86.36 0.56 6.26 16 29 C -0.12 -3.73 4.97 30.67 0.15 -3.57 16 30 H 0.07 1.90 6.46 -2.38 -0.02 1.88 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.70 6.46 -2.39 -0.02 1.68 16 33 H 0.41 7.50 6.85 -92.71 -0.63 6.87 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.64 8.06 -2.39 -0.02 0.62 16 39 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 1.99 6.51 -2.39 -0.02 1.98 16 46 H 0.07 1.96 6.46 -2.39 -0.02 1.95 16 47 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 48 H 0.05 2.79 6.04 -2.38 -0.01 2.78 16 49 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 50 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 51 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 52 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.06 2.08 6.51 -2.39 -0.02 2.06 16 Total: -1.00 -76.28 408.84 1.45 -74.83 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.25 Total: 18.78 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.92 Total: 7.18 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -4.06 Total: -104.60 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -2.69 Total: -42.67 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -76.28 1.45 -74.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717985234.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.283 kcal (2) G-P(sol) polarization free energy of solvation -76.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds