Wall clock time and date at job start Wed Apr 1 2020 01:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47288 * 2 1 4 4 N 1.46499 * 109.47307 * 239.99878 * 2 1 3 5 5 C 1.34776 * 120.00279 * 84.99833 * 4 2 1 6 6 O 1.21278 * 119.99504 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00170 * 180.02562 * 5 4 2 8 8 O 1.42906 * 109.47259 * 180.02562 * 7 5 4 9 9 C 1.42898 * 113.99950 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.46920 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.32582 * 305.69498 * 10 9 8 12 12 C 1.54476 * 110.37244 * 183.45022 * 10 9 8 13 13 C 1.54507 * 104.06238 * 217.18619 * 12 10 9 14 14 C 1.54477 * 104.06213 * 359.97438 * 13 12 10 15 15 O 1.44420 * 110.37670 * 67.94528 * 10 9 8 16 16 C 1.53005 * 109.46790 * 120.00210 * 2 1 3 17 17 C 1.53045 * 109.45543 * 299.99942 * 16 2 1 18 18 C 1.53199 * 109.31010 * 178.63270 * 17 16 2 19 19 N 1.46921 * 108.77459 * 54.63267 * 18 17 16 20 20 C 1.36942 * 120.62898 * 126.37374 * 19 18 17 21 21 H 1.08002 * 119.99640 * 332.29908 * 20 19 18 22 22 C 1.38810 * 119.99837 * 152.58270 * 20 19 18 23 23 N 1.31615 * 119.99936 * 342.49977 * 22 20 19 24 24 Si 1.86802 * 119.99768 * 162.50329 * 22 20 19 25 25 H 1.48499 * 109.47235 * 59.99779 * 24 22 20 26 26 H 1.48500 * 109.47051 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47045 * 299.99467 * 24 22 20 28 28 C 1.46929 * 118.74235 * 306.64287 * 19 18 17 29 29 C 1.52760 * 109.00742 * 53.30960 * 28 19 18 30 30 H 1.09003 * 109.47616 * 300.00427 * 1 2 3 31 31 H 1.09005 * 109.47124 * 60.00319 * 1 2 3 32 32 H 1.09004 * 109.47287 * 179.97438 * 1 2 3 33 33 H 0.97006 * 119.99624 * 265.00398 * 4 2 1 34 34 H 1.08998 * 109.47199 * 300.00078 * 7 5 4 35 35 H 1.09001 * 109.47578 * 60.00131 * 7 5 4 36 36 H 1.09005 * 109.47165 * 299.99669 * 9 8 7 37 37 H 1.08992 * 109.47319 * 60.00022 * 9 8 7 38 38 H 1.09003 * 110.51023 * 335.82902 * 12 10 9 39 39 H 1.09006 * 110.51246 * 98.54277 * 12 10 9 40 40 H 1.09004 * 110.51365 * 118.64104 * 13 12 10 41 41 H 1.08999 * 110.50996 * 241.35450 * 13 12 10 42 42 H 1.09004 * 110.37451 * 142.81236 * 14 13 12 43 43 H 1.09001 * 110.37527 * 265.03292 * 14 13 12 44 44 H 1.08990 * 109.46236 * 59.97082 * 16 2 1 45 45 H 1.08991 * 109.49921 * 58.67939 * 17 16 2 46 46 H 1.08998 * 109.52520 * 298.59571 * 17 16 2 47 47 H 1.08997 * 109.58315 * 294.84405 * 18 17 16 48 48 H 1.09000 * 109.58241 * 174.42269 * 18 17 16 49 49 H 0.97003 * 119.99956 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.58950 * 173.14650 * 28 19 18 51 51 H 1.09004 * 109.58258 * 293.57393 * 28 19 18 52 52 H 1.09000 * 109.56965 * 185.55379 * 29 28 19 53 53 H 1.09001 * 109.35660 * 65.49856 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6489 -0.7289 -3.5876 8 8 2.6976 0.1894 -4.6815 9 6 3.1623 -0.3867 -5.9038 10 6 3.1737 0.6815 -6.9992 11 1 2.1925 1.1488 -7.0826 12 6 3.5905 0.0611 -8.3511 13 6 4.4500 1.1580 -9.0184 14 6 4.4502 2.3116 -7.9911 15 8 4.1825 1.6767 -6.7204 16 6 2.0399 -0.7213 1.2493 17 6 1.5295 0.0004 2.4986 18 6 2.0136 -0.7441 3.7470 19 7 3.4753 -0.8767 3.6815 20 6 4.2618 -0.4503 4.7183 21 1 3.9234 0.3509 5.3587 22 6 5.4963 -1.0439 4.9427 23 7 5.7708 -2.2143 4.4069 24 14 6.7679 -0.1816 6.0052 25 1 6.2161 0.0250 7.3683 26 1 7.9922 -1.0179 6.0888 27 1 7.1062 1.1332 5.4035 28 6 4.0778 -1.4699 2.4798 29 6 3.5703 -0.7224 1.2480 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6319 -1.1525 34 1 3.6480 -1.1214 -3.3985 35 1 1.9760 -1.5507 -3.8325 36 1 4.1718 -0.7728 -5.7629 37 1 2.4995 -1.2009 -6.1968 38 1 4.1802 -0.8417 -8.1914 39 1 2.7119 -0.1577 -8.9580 40 1 5.4645 0.7976 -9.1887 41 1 3.9963 1.4815 -9.9552 42 1 5.4230 2.8030 -7.9723 43 1 3.6670 3.0315 -8.2286 44 1 1.6761 -1.7487 1.2493 45 1 0.4399 0.0212 2.4871 46 1 1.9128 1.0207 2.5121 47 1 1.5581 -1.7337 3.7818 48 1 1.7373 -0.1808 4.6384 49 1 6.6334 -2.6293 4.5640 50 1 5.1631 -1.3854 2.5354 51 1 3.7940 -2.5200 2.4092 52 1 3.9330 -1.2159 0.3464 53 1 3.9348 0.3046 1.2730 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717985235.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:49 Heat of formation + Delta-G solvation = -139.790993 kcal Electronic energy + Delta-G solvation = -30053.769092 eV Core-core repulsion = 25924.745041 eV Total energy + Delta-G solvation = -4129.024051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.11328 -40.43668 -39.50224 -38.29008 -36.72808 -34.55249 -33.14437 -32.79996 -31.87228 -31.76627 -30.46706 -28.57917 -27.14393 -26.07611 -24.62941 -23.58239 -22.93267 -22.27226 -21.88585 -21.50151 -20.65336 -18.78416 -18.29500 -17.96955 -17.61948 -17.01343 -16.84340 -16.72702 -16.55257 -16.28870 -15.80594 -15.41904 -15.28541 -15.07816 -14.88176 -14.71120 -14.61273 -14.32193 -13.98756 -13.89698 -13.57983 -13.21122 -13.17075 -12.99474 -12.74324 -12.70530 -12.65372 -12.63763 -12.38114 -12.21790 -12.19447 -12.15783 -11.96514 -11.79517 -11.49181 -11.47104 -11.21534 -11.10025 -10.77707 -10.74856 -10.71876 -10.51700 -10.05652 -8.65489 -7.87086 -5.30623 1.45046 1.47854 1.54121 1.60816 1.83297 2.51073 2.89545 2.97279 3.26748 3.64847 3.68960 3.72926 3.81790 3.90267 3.98708 3.99528 4.07196 4.15363 4.17410 4.28744 4.30648 4.42124 4.43544 4.49882 4.50810 4.56960 4.57681 4.60910 4.76332 4.80213 4.83611 4.87989 4.93709 4.94484 5.01018 5.06797 5.08304 5.11804 5.16689 5.23797 5.30311 5.39429 5.45321 5.51464 5.58391 5.67543 5.80372 5.88445 6.08631 6.40530 6.60290 7.16683 7.27792 7.89631 8.39497 9.18749 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.001993 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.665810 B =14046.129800 C =15248.945375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.056 0.944 4 N -0.708 5.708 5 C 0.508 3.492 6 O -0.577 6.577 7 C 0.046 3.954 8 O -0.396 6.396 9 C 0.062 3.938 10 C 0.066 3.934 11 H 0.067 0.933 12 C -0.140 4.140 13 C -0.150 4.150 14 C 0.030 3.970 15 O -0.401 6.401 16 C -0.072 4.072 17 C -0.117 4.117 18 C 0.141 3.859 19 N -0.612 5.612 20 C -0.263 4.263 21 H 0.062 0.938 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.275 1.275 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.177 3.823 29 C -0.120 4.120 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.022 0.978 48 H 0.050 0.950 49 H 0.250 0.750 50 H 0.047 0.953 51 H 0.004 0.996 52 H 0.070 0.930 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 -1.082 -27.526 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.050 3.950 3 H 0.074 0.926 4 N -0.361 5.361 5 C 0.295 3.705 6 O -0.456 6.456 7 C -0.033 4.033 8 O -0.315 6.315 9 C -0.014 4.014 10 C 0.009 3.991 11 H 0.085 0.915 12 C -0.178 4.178 13 C -0.187 4.187 14 C -0.046 4.046 15 O -0.321 6.321 16 C -0.091 4.091 17 C -0.156 4.156 18 C 0.016 3.984 19 N -0.336 5.336 20 C -0.393 4.393 21 H 0.080 0.920 22 C -0.246 4.246 23 N -0.578 5.578 24 Si 0.791 3.209 25 H -0.200 1.200 26 H -0.218 1.218 27 H -0.209 1.209 28 C 0.052 3.948 29 C -0.159 4.159 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.040 0.960 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.066 0.934 51 H 0.022 0.978 52 H 0.088 0.912 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.702 -0.100 -27.311 28.664 hybrid contribution 1.185 -0.104 0.789 1.427 sum -7.517 -0.204 -26.522 27.567 Atomic orbital electron populations 1.22140 0.93817 1.03117 1.02181 1.20886 0.94789 0.95954 0.83363 0.92597 1.45874 1.66877 1.14734 1.08630 1.20880 0.77244 0.86997 0.85367 1.90704 1.51175 1.18178 1.85578 1.22346 1.03605 0.92314 0.85073 1.88024 1.87510 1.37094 1.18885 1.22875 1.00187 0.95401 0.82957 1.23198 0.92409 0.89111 0.94429 0.91476 1.22926 1.01576 0.99483 0.93820 1.22944 1.01705 0.94892 0.99204 1.23648 1.02014 0.96081 0.82897 1.89260 1.58916 1.52860 1.31104 1.21200 0.94779 1.00008 0.93092 1.21970 1.00796 0.98605 0.94221 1.21066 0.83680 0.97077 0.96596 1.44316 1.01338 1.72296 1.15671 1.19456 0.99834 1.11917 1.08101 0.92012 1.25726 1.01708 0.96057 1.01127 1.70161 1.22711 1.15370 1.49561 0.85416 0.78686 0.77762 0.79058 1.20037 1.21832 1.20945 1.20493 0.97340 0.92682 0.84310 1.21945 0.95920 0.99661 0.98376 0.90416 0.93714 0.90605 0.74750 0.88144 0.86454 0.91723 0.88486 0.89258 0.88115 0.89891 0.88575 0.88668 0.92014 0.89733 0.89071 0.93569 0.96040 0.93102 0.94138 0.93426 0.97822 0.91165 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.13 71.98 0.66 -2.83 16 2 C 0.15 4.15 2.16 44.99 0.10 4.25 16 3 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 4 N -0.71 -16.22 4.36 -442.54 -1.93 -18.15 16 5 C 0.51 13.86 7.87 87.65 0.69 14.55 16 6 O -0.58 -22.18 16.16 16.01 0.26 -21.92 16 7 C 0.05 0.87 6.42 71.23 0.46 1.32 16 8 O -0.40 -10.03 9.88 -127.67 -1.26 -11.29 16 9 C 0.06 1.01 5.54 71.98 0.40 1.41 16 10 C 0.07 1.15 3.57 31.10 0.11 1.26 16 11 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 12 C -0.14 -1.32 6.63 31.61 0.21 -1.11 16 13 C -0.15 -1.40 7.09 31.61 0.22 -1.18 16 14 C 0.03 0.46 7.63 72.48 0.55 1.02 16 15 O -0.40 -9.69 11.35 -148.60 -1.69 -11.38 16 16 C -0.07 -2.12 1.79 -10.76 -0.02 -2.14 16 17 C -0.12 -3.72 5.05 30.68 0.15 -3.56 16 18 C 0.14 5.69 6.52 86.37 0.56 6.25 16 19 N -0.61 -30.78 3.00 -699.92 -2.10 -32.88 16 20 C -0.26 -14.71 9.59 84.03 0.81 -13.90 16 21 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 22 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 23 N -0.93 -55.27 11.20 21.65 0.24 -55.03 16 24 Si 0.96 45.74 29.59 68.60 2.03 47.77 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 28 C 0.18 8.42 5.28 86.22 0.46 8.87 16 29 C -0.12 -4.39 5.20 30.53 0.16 -4.23 16 30 H 0.08 1.64 6.40 -2.39 -0.02 1.62 16 31 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.42 6.89 8.38 -92.70 -0.78 6.11 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 39 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.09 2.29 6.36 -2.39 -0.02 2.28 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 49 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 50 H 0.05 2.61 6.04 -2.39 -0.01 2.60 16 51 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 52 H 0.07 2.21 7.40 -2.39 -0.02 2.19 16 53 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -79.93 413.81 1.59 -78.34 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.10 Total: 17.02 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 5.93 Total: 7.51 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -3.79 Total: -106.07 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -2.69 Total: -44.59 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -79.93 1.59 -78.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717985235.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.447 kcal (2) G-P(sol) polarization free energy of solvation -79.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds