Wall clock time and date at job start Tue Mar 31 2020 23:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47023 * 2 1 4 4 C 1.53001 * 109.47159 * 120.00265 * 2 1 3 5 5 C 1.52995 * 109.46986 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47378 * 299.99967 * 5 4 2 7 7 C 1.53001 * 109.47035 * 60.00063 * 6 5 4 8 8 H 1.08997 * 109.46770 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.46994 * 60.00075 * 7 6 5 10 10 C 1.42896 * 114.00192 * 90.00183 * 9 7 6 11 11 C 1.50702 * 109.47283 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99425 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99867 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99563 * 174.83731 * 13 11 10 15 15 C 1.52999 * 112.94903 * 292.71107 * 14 13 11 16 16 C 1.53004 * 109.46937 * 304.09888 * 15 14 13 17 17 O 1.42905 * 109.46988 * 175.20487 * 16 15 14 18 18 C 1.53952 * 113.73868 * 160.98100 * 14 13 11 19 19 N 1.47585 * 86.11438 * 222.04640 * 18 14 13 20 20 C 1.36938 * 134.49304 * 204.63690 * 19 18 14 21 21 H 1.07995 * 120.00363 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99589 * 0.02562 * 20 19 18 23 23 N 1.31615 * 120.00446 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99604 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47093 * 89.99996 * 24 22 20 26 26 H 1.48500 * 109.46756 * 209.99711 * 24 22 20 27 27 H 1.48501 * 109.46971 * 329.99580 * 24 22 20 28 28 C 1.47579 * 91.01568 * 24.64251 * 19 18 14 29 29 C 1.52991 * 109.47173 * 299.99873 * 7 6 5 30 30 H 1.09008 * 109.46720 * 299.99832 * 1 2 3 31 31 H 1.09001 * 109.47359 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47465 * 59.99457 * 1 2 3 33 33 H 1.08997 * 109.46770 * 299.99823 * 4 2 1 34 34 H 1.09004 * 109.46975 * 59.99567 * 4 2 1 35 35 H 1.09004 * 109.47148 * 60.00247 * 5 4 2 36 36 H 1.09000 * 109.47330 * 179.97438 * 5 4 2 37 37 H 1.09007 * 109.47140 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47323 * 299.99691 * 6 5 4 39 39 H 1.09002 * 109.47317 * 299.99823 * 10 9 7 40 40 H 1.09008 * 109.47153 * 59.99426 * 10 9 7 41 41 H 0.96996 * 119.99926 * 354.84004 * 13 11 10 42 42 H 1.09003 * 109.47049 * 64.09676 * 15 14 13 43 43 H 1.08995 * 109.47717 * 184.09949 * 15 14 13 44 44 H 1.08991 * 109.47045 * 295.20622 * 16 15 14 45 45 H 1.09005 * 109.47272 * 55.21146 * 16 15 14 46 46 H 0.96700 * 114.00071 * 179.97438 * 17 16 15 47 47 H 1.08995 * 113.76951 * 336.34310 * 18 14 13 48 48 H 1.08997 * 113.77132 * 107.74683 * 18 14 13 49 49 H 0.97002 * 120.00246 * 179.97438 * 23 22 20 50 50 H 1.08998 * 113.76839 * 221.06012 * 28 19 18 51 51 H 1.08995 * 113.77326 * 89.66247 * 28 19 18 52 52 H 1.09002 * 109.47576 * 300.00417 * 29 7 6 53 53 H 1.08997 * 109.47805 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9329 -1.2359 -2.1395 9 8 4.0463 0.6251 -1.2498 10 6 5.3058 0.7958 -1.9028 11 6 5.7097 2.2465 -1.8440 12 8 4.9895 3.0546 -1.2972 13 7 6.8711 2.6456 -2.3992 14 6 7.2108 4.0700 -2.4423 15 6 6.2928 4.8745 -3.3648 16 6 6.3181 4.2645 -4.7678 17 8 5.3774 4.9457 -5.6004 18 6 8.7096 4.3433 -2.6637 19 7 8.5660 5.3966 -1.6400 20 6 9.2411 6.5525 -1.3510 21 1 8.9270 7.1683 -0.5213 22 6 10.3290 6.9327 -2.1247 23 7 10.7122 6.1820 -3.1357 24 14 11.2504 8.5091 -1.7302 25 1 12.3484 8.2148 -0.7747 26 1 11.8197 9.0755 -2.9793 27 1 10.3154 9.4901 -1.1230 28 6 7.4028 4.7039 -1.0526 29 6 2.0396 -0.7216 -1.2493 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 1.6767 -0.2075 2.1392 34 1 1.6766 -1.7490 1.2492 35 1 3.9337 0.3057 1.2487 36 1 3.9334 -1.2353 2.1390 37 1 5.1696 -1.4433 -0.0008 38 1 3.7159 -2.4709 -0.0002 39 1 6.0598 0.1878 -1.4026 40 1 5.2204 0.4846 -2.9440 41 1 7.4820 1.9898 -2.7701 42 1 5.2748 4.8496 -2.9761 43 1 6.6388 5.9071 -3.4114 44 1 7.3176 4.3663 -5.1902 45 1 6.0539 3.2086 -4.7097 46 1 5.3398 4.6111 -6.5068 47 1 9.3559 3.5201 -2.3593 48 1 8.9445 4.7253 -3.6571 49 1 11.4722 6.4479 -3.6766 50 1 6.5943 5.3737 -0.7599 51 1 7.6652 3.9866 -0.2750 52 1 1.6758 -1.7491 -1.2491 53 1 1.6761 -0.2081 -2.1394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725206069.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:21 Heat of formation + Delta-G solvation = -121.245768 kcal Electronic energy + Delta-G solvation = -31191.339083 eV Core-core repulsion = 27063.119213 eV Total energy + Delta-G solvation = -4128.219870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.50506 -40.41262 -39.24293 -37.71037 -37.13000 -35.27198 -33.83144 -33.12853 -32.02479 -31.17925 -29.26871 -28.27715 -27.23310 -26.86423 -24.98165 -23.41632 -23.34024 -22.16012 -21.81089 -20.50523 -20.11574 -18.79463 -18.54163 -18.15550 -17.39959 -17.02338 -16.86222 -16.64196 -16.30329 -15.99747 -15.80522 -15.72881 -15.32266 -15.03821 -14.94713 -14.61392 -14.42339 -14.04446 -13.70516 -13.60871 -13.33306 -13.28854 -13.17699 -13.03332 -12.89798 -12.81031 -12.69146 -12.66739 -12.57911 -12.28362 -12.24758 -12.05987 -11.77849 -11.73895 -11.42623 -11.38045 -11.16568 -10.98300 -10.87318 -10.83804 -10.58129 -10.34349 -10.05427 -8.97695 -7.94693 -5.27689 1.45115 1.46610 1.55365 1.69584 1.86217 2.46028 3.05579 3.13934 3.25464 3.39551 3.60155 3.78362 3.82058 3.90075 3.96594 4.11379 4.23674 4.24972 4.28295 4.32155 4.33313 4.38042 4.44860 4.48008 4.57870 4.65456 4.70218 4.70966 4.73858 4.83923 4.84514 4.93339 4.96026 5.01815 5.02362 5.09659 5.11886 5.16078 5.19523 5.21002 5.37039 5.39101 5.45334 5.46280 5.47826 5.67142 5.70589 5.88622 6.28158 6.69328 6.89667 6.92131 7.37400 7.54938 8.48472 9.22121 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.002468 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.821124 B =11342.917694 C =12026.537155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.043 0.957 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.137 4.137 7 C 0.081 3.919 8 H 0.086 0.914 9 O -0.381 6.381 10 C 0.049 3.951 11 C 0.508 3.492 12 O -0.564 6.564 13 N -0.704 5.704 14 C 0.158 3.842 15 C -0.089 4.089 16 C 0.093 3.907 17 O -0.594 6.594 18 C 0.174 3.826 19 N -0.632 5.632 20 C -0.239 4.239 21 H 0.077 0.923 22 C -0.057 4.057 23 N -0.946 5.946 24 Si 0.978 3.022 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.274 1.274 28 C 0.126 3.874 29 C -0.106 4.106 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.417 0.583 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.397 0.603 47 H 0.037 0.963 48 H 0.061 0.939 49 H 0.252 0.748 50 H 0.034 0.966 51 H 0.039 0.961 52 H 0.098 0.902 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.990 -22.603 -1.071 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.062 0.938 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.175 4.175 7 C 0.024 3.976 8 H 0.104 0.896 9 O -0.300 6.300 10 C -0.030 4.030 11 C 0.295 3.705 12 O -0.441 6.441 13 N -0.359 5.359 14 C 0.070 3.930 15 C -0.128 4.128 16 C 0.015 3.985 17 O -0.402 6.402 18 C 0.049 3.951 19 N -0.359 5.359 20 C -0.367 4.367 21 H 0.095 0.905 22 C -0.251 4.251 23 N -0.594 5.594 24 Si 0.806 3.194 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.199 1.199 28 C 0.000 4.000 29 C -0.144 4.144 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.255 0.745 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.247 0.753 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.116 0.884 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.497 -21.302 -0.095 26.343 hybrid contribution 1.383 0.633 -0.234 1.539 sum -14.114 -20.669 -0.329 25.030 Atomic orbital electron populations 1.21812 0.94617 1.02305 1.01392 1.21027 0.95702 0.99058 0.95350 0.93828 1.21544 0.95122 1.00874 0.96992 1.21417 0.96086 1.00038 0.98064 1.22029 1.00909 0.99986 0.94530 1.22398 0.95038 0.81905 0.98298 0.89641 1.88075 1.35060 1.28802 1.78067 1.22324 0.88597 0.91734 1.00385 1.21028 0.80678 0.91369 0.77412 1.90716 1.53342 1.56419 1.43623 1.45814 1.21133 1.07513 1.61420 1.22162 0.95249 0.80296 0.95286 1.21181 0.98601 0.98861 0.94162 1.21961 0.91800 0.95286 0.89444 1.86443 1.62923 1.63621 1.27224 1.22424 0.89078 0.89145 0.94468 1.45976 1.34033 1.21444 1.34459 1.19293 1.08685 0.96985 1.11716 0.90546 1.25537 0.99298 1.02124 0.98096 1.69922 1.28933 1.39792 1.20742 0.85100 0.78403 0.79108 0.76830 1.21112 1.21512 1.19942 1.22836 0.88919 0.93517 0.94717 1.21695 0.92972 1.01893 0.97809 0.93167 0.91273 0.93112 0.92899 0.90459 0.94303 0.91638 0.91601 0.88967 0.88011 0.87238 0.74529 0.92481 0.93008 0.93255 0.91638 0.75312 0.94576 0.92067 0.93880 0.94740 0.94357 0.88412 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.19 71.98 0.66 -1.55 16 2 C -0.09 -1.72 2.58 -10.79 -0.03 -1.74 16 3 H 0.04 1.15 7.68 -2.39 -0.02 1.13 16 4 C -0.11 -1.76 5.20 30.59 0.16 -1.60 16 5 C -0.12 -2.12 5.78 30.59 0.18 -1.95 16 6 C -0.14 -1.87 5.63 30.59 0.17 -1.70 16 7 C 0.08 1.24 2.92 30.59 0.09 1.33 16 8 H 0.09 0.88 7.78 -2.39 -0.02 0.86 16 9 O -0.38 -9.00 8.17 -129.94 -1.06 -10.06 16 10 C 0.05 0.94 6.23 71.24 0.44 1.38 16 11 C 0.51 15.00 7.57 87.66 0.66 15.67 16 12 O -0.56 -22.85 14.96 16.02 0.24 -22.61 16 13 N -0.70 -19.69 4.46 -427.55 -1.91 -21.59 16 14 C 0.16 6.03 0.67 5.36 0.00 6.04 16 15 C -0.09 -3.53 4.86 30.60 0.15 -3.39 16 16 C 0.09 2.88 6.86 71.98 0.49 3.37 16 17 O -0.59 -18.09 13.66 -148.98 -2.04 -20.12 16 18 C 0.17 7.87 6.72 86.48 0.58 8.45 16 19 N -0.63 -33.37 3.54 -716.13 -2.54 -35.91 16 20 C -0.24 -13.78 10.70 84.03 0.90 -12.88 16 21 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 22 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 23 N -0.95 -55.32 11.38 21.65 0.25 -55.07 16 24 Si 0.98 46.09 29.55 68.60 2.03 48.11 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 28 C 0.13 5.80 7.38 86.48 0.64 6.44 16 29 C -0.11 -1.59 4.94 30.59 0.15 -1.44 16 30 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.04 0.96 7.68 -2.38 -0.02 0.94 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 0.86 7.87 -2.38 -0.02 0.85 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.41 7.87 -2.39 -0.02 1.39 16 40 H 0.11 1.36 8.09 -2.38 -0.02 1.34 16 41 H 0.42 8.35 8.72 -92.71 -0.81 7.54 16 42 H 0.06 2.43 7.27 -2.39 -0.02 2.41 16 43 H 0.05 2.43 8.02 -2.39 -0.02 2.41 16 44 H 0.05 1.55 7.62 -2.39 -0.02 1.53 16 45 H 0.07 1.65 7.53 -2.38 -0.02 1.64 16 46 H 0.40 7.35 9.12 -74.06 -0.68 6.67 16 47 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.06 3.03 6.60 -2.39 -0.02 3.01 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.03 1.68 8.10 -2.39 -0.02 1.66 16 51 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -78.29 415.45 0.10 -78.18 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.59 Total: 25.40 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.72 Total: 13.66 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.20 Total: -112.57 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -2.86 Total: -52.79 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -78.29 0.10 -78.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725206069.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.061 kcal (2) G-P(sol) polarization free energy of solvation -78.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds