Wall clock time and date at job start Tue Mar 31 2020 23:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46802 * 2 1 4 4 C 1.52994 * 109.47332 * 240.00025 * 2 1 3 5 5 C 1.53002 * 109.47332 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46734 * 59.99791 * 5 4 2 7 7 C 1.52997 * 109.47206 * 299.99843 * 6 5 4 8 8 H 1.09000 * 109.47073 * 300.00249 * 7 6 5 9 9 O 1.42894 * 109.47174 * 180.02562 * 7 6 5 10 10 C 1.42898 * 114.00320 * 89.99979 * 9 7 6 11 11 C 1.50700 * 109.47407 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00054 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00224 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99778 * 184.87106 * 13 11 10 15 15 C 1.52997 * 113.28524 * 52.96662 * 14 13 11 16 16 C 1.53002 * 109.47123 * 67.63744 * 15 14 13 17 17 O 1.42903 * 109.47064 * 185.00727 * 16 15 14 18 18 C 1.53502 * 114.20444 * 186.03195 * 14 13 11 19 19 N 1.47063 * 87.98619 * 87.71449 * 18 14 13 20 20 C 1.36935 * 136.05705 * 207.08439 * 19 18 14 21 21 H 1.07993 * 120.00370 * 6.33012 * 20 19 18 22 22 C 1.38815 * 119.99871 * 186.33023 * 20 19 18 23 23 N 1.31619 * 120.00251 * 194.64996 * 22 20 19 24 24 Si 1.86800 * 119.99859 * 14.65165 * 22 20 19 25 25 H 1.48507 * 109.46965 * 269.99907 * 24 22 20 26 26 H 1.48502 * 109.47315 * 149.99890 * 24 22 20 27 27 H 1.48498 * 109.47640 * 29.99809 * 24 22 20 28 28 C 1.47068 * 87.88243 * 27.34381 * 19 18 14 29 29 C 1.52999 * 109.46933 * 119.99511 * 2 1 3 30 30 H 1.08997 * 109.47107 * 300.00270 * 1 2 3 31 31 H 1.09006 * 109.47210 * 59.99899 * 1 2 3 32 32 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46712 * 300.00052 * 4 2 1 34 34 H 1.09002 * 109.47123 * 59.99422 * 4 2 1 35 35 H 1.08997 * 109.47107 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.46802 * 299.99974 * 5 4 2 37 37 H 1.09004 * 109.46361 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47326 * 60.00504 * 6 5 4 39 39 H 1.09000 * 109.47367 * 59.99708 * 10 9 7 40 40 H 1.09008 * 109.47064 * 300.00241 * 10 9 7 41 41 H 0.97001 * 119.99954 * 4.87155 * 13 11 10 42 42 H 1.08999 * 109.47588 * 187.63516 * 15 14 13 43 43 H 1.09000 * 109.47284 * 307.64072 * 15 14 13 44 44 H 1.09001 * 109.46952 * 305.00268 * 16 15 14 45 45 H 1.08999 * 109.47620 * 65.00453 * 16 15 14 46 46 H 0.96702 * 113.99776 * 179.97438 * 17 16 15 47 47 H 1.09010 * 113.46327 * 332.93621 * 18 14 13 48 48 H 1.08996 * 113.46953 * 202.49900 * 18 14 13 49 49 H 0.96998 * 119.99514 * 354.94768 * 23 22 20 50 50 H 1.09005 * 113.46855 * 87.43929 * 28 19 18 51 51 H 1.08997 * 113.46519 * 217.87292 * 28 19 18 52 52 H 1.09001 * 109.46977 * 60.00596 * 29 2 1 53 53 H 1.08997 * 109.47403 * 300.00038 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0794 -1.4434 0.0005 7 6 3.5695 -0.7221 1.2496 8 1 3.9332 0.3054 1.2498 9 8 4.0457 -1.3957 2.4164 10 6 5.3053 -0.9161 2.8911 11 6 5.7091 -1.6934 4.1173 12 8 4.9888 -2.5714 4.5433 13 7 6.8702 -1.4122 4.7414 14 6 7.3143 -2.2364 5.8682 15 6 7.3491 -3.7319 5.5470 16 6 8.4484 -4.0072 4.5190 17 8 8.4049 -5.3821 4.1318 18 6 8.5748 -1.7142 6.5715 19 7 7.6982 -0.8934 7.4204 20 6 7.8137 0.2850 8.1084 21 1 8.7068 0.8837 8.0078 22 6 6.7827 0.7099 8.9350 23 7 6.7547 1.9531 9.3662 24 14 5.4349 -0.4828 9.4355 25 1 4.3305 -0.4259 8.4444 26 1 4.9166 -0.1098 10.7762 27 1 5.9861 -1.8608 9.4838 28 6 6.6452 -1.8984 7.2106 29 6 2.0400 -0.7211 1.2493 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6767 -1.7489 -1.2491 34 1 1.6766 -0.2074 -2.1392 35 1 3.9334 -1.2360 -2.1386 36 1 3.9337 0.3058 -1.2486 37 1 5.1695 -1.4441 0.0004 38 1 3.7158 -2.4709 0.0002 39 1 5.2204 0.1412 3.1422 40 1 6.0594 -1.0455 2.1146 41 1 7.4117 -0.6642 4.4445 42 1 7.5543 -4.2945 6.4577 43 1 6.3858 -4.0386 5.1396 44 1 8.2923 -3.3779 3.6428 45 1 9.4208 -3.7840 4.9581 46 1 9.0754 -5.6285 3.4800 47 1 9.2231 -1.1269 5.9210 48 1 9.1152 -2.4842 7.1221 49 1 7.4913 2.5521 9.1673 50 1 6.6768 -2.7169 7.9297 51 1 5.6494 -1.4680 7.1047 52 1 1.6767 -1.7488 1.2493 53 1 1.6766 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725206070.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:25 Heat of formation + Delta-G solvation = -118.529757 kcal Electronic energy + Delta-G solvation = -31097.097356 eV Core-core repulsion = 26968.995261 eV Total energy + Delta-G solvation = -4128.102095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.74606 -40.43857 -39.44089 -37.73999 -37.53609 -35.32263 -34.14788 -33.23641 -32.45683 -31.16237 -29.20046 -28.35797 -27.30516 -27.21344 -24.72026 -23.36516 -22.95152 -22.27145 -21.97588 -20.74691 -20.49506 -19.57533 -18.41483 -18.35467 -17.79824 -17.21715 -16.93609 -16.38552 -16.23856 -16.03741 -15.89688 -15.67578 -15.33594 -15.27130 -15.19672 -14.98214 -14.84031 -14.45239 -14.07312 -13.84489 -13.53893 -13.39752 -13.30053 -13.24872 -12.97279 -12.82305 -12.75798 -12.42714 -12.33571 -12.24139 -11.98737 -11.90151 -11.84947 -11.53696 -11.43548 -11.32688 -11.29441 -11.19592 -11.03195 -10.88641 -10.57737 -10.42721 -10.05253 -9.27229 -8.61830 -5.47281 1.36658 1.40591 1.54894 1.57526 1.75055 2.45952 2.88011 2.89069 3.11985 3.16883 3.53696 3.65190 3.74149 3.80808 4.00683 4.06899 4.12597 4.14281 4.21676 4.23961 4.26365 4.30374 4.36244 4.38590 4.51281 4.52144 4.56373 4.57926 4.64064 4.67367 4.70672 4.75602 4.83434 4.86381 4.97223 5.04539 5.04946 5.08527 5.13356 5.13598 5.26159 5.28669 5.29137 5.37997 5.39505 5.55537 5.59894 5.94038 6.14844 6.57450 6.68304 6.95157 7.24385 7.30832 8.23945 8.90326 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003086 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.246626 B = 9070.361595 C =10894.679806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.138 4.138 7 C 0.084 3.916 8 H 0.075 0.925 9 O -0.389 6.389 10 C 0.050 3.950 11 C 0.509 3.491 12 O -0.561 6.561 13 N -0.686 5.686 14 C 0.159 3.841 15 C -0.115 4.115 16 C 0.090 3.910 17 O -0.594 6.594 18 C 0.128 3.872 19 N -0.647 5.647 20 C -0.279 4.279 21 H 0.066 0.934 22 C -0.075 4.075 23 N -0.970 5.970 24 Si 1.089 2.911 25 H -0.300 1.300 26 H -0.300 1.300 27 H -0.258 1.258 28 C 0.089 3.911 29 C -0.112 4.112 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.416 0.584 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.251 0.749 50 H 0.058 0.942 51 H 0.028 0.972 52 H 0.058 0.942 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -7.381 -26.412 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.175 4.175 7 C 0.026 3.974 8 H 0.093 0.907 9 O -0.308 6.308 10 C -0.029 4.029 11 C 0.296 3.704 12 O -0.439 6.439 13 N -0.340 5.340 14 C 0.070 3.930 15 C -0.155 4.155 16 C 0.013 3.987 17 O -0.402 6.402 18 C 0.003 3.997 19 N -0.375 5.375 20 C -0.406 4.406 21 H 0.084 0.916 22 C -0.269 4.269 23 N -0.616 5.616 24 Si 0.918 3.082 25 H -0.228 1.228 26 H -0.228 1.228 27 H -0.182 1.182 28 C -0.037 4.037 29 C -0.150 4.150 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.253 0.747 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.247 0.753 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.061 0.939 50 H 0.075 0.925 51 H 0.046 0.954 52 H 0.077 0.923 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.965 -8.073 -24.672 26.260 hybrid contribution 2.113 1.035 -0.485 2.403 sum -1.851 -7.038 -25.157 26.188 Atomic orbital electron populations 1.21817 0.94459 1.01964 1.02179 1.21083 0.96108 0.99576 0.93546 0.90465 1.21642 0.95494 1.00700 0.97447 1.21489 0.95628 1.01086 0.96818 1.22019 1.01110 0.99996 0.94416 1.22370 0.94929 0.95878 0.84174 0.90736 1.88020 1.35529 1.61465 1.45759 1.22289 0.88546 0.97833 0.94279 1.20884 0.80510 0.83747 0.85238 1.90675 1.52152 1.34012 1.67023 1.45267 1.22949 1.33596 1.32162 1.21401 0.96550 0.89907 0.85129 1.21575 1.00812 0.92568 1.00520 1.21997 0.97822 0.82215 0.96716 1.86445 1.61152 1.27086 1.65557 1.22848 0.92417 0.93174 0.91283 1.46243 1.11914 1.20078 1.59253 1.19995 1.04531 0.94473 1.21643 0.91598 1.26540 1.03028 0.99719 0.97588 1.70990 1.32839 1.04530 1.53197 0.83419 0.74186 0.75080 0.75481 1.22805 1.22801 1.18230 1.23254 0.93438 0.91678 0.95351 1.21655 0.93313 1.01287 0.98742 0.93041 0.91237 0.92867 0.92297 0.90354 0.90495 0.90964 0.91090 0.92391 0.88852 0.86886 0.74699 0.90242 0.91251 0.93085 0.91504 0.75290 0.90719 0.90916 0.93924 0.92451 0.95361 0.92345 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.19 71.98 0.66 -1.29 16 2 C -0.08 -1.20 2.72 -10.80 -0.03 -1.23 16 3 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.12 -1.37 5.20 30.59 0.16 -1.21 16 5 C -0.11 -1.29 5.92 30.60 0.18 -1.11 16 6 C -0.14 -2.20 5.54 30.59 0.17 -2.03 16 7 C 0.08 1.67 2.61 30.58 0.08 1.75 16 8 H 0.07 1.26 7.79 -2.39 -0.02 1.24 16 9 O -0.39 -10.92 9.52 -129.95 -1.24 -12.15 16 10 C 0.05 1.18 6.23 71.24 0.44 1.62 16 11 C 0.51 16.44 7.63 87.66 0.67 17.11 16 12 O -0.56 -23.41 14.51 15.98 0.23 -23.17 16 13 N -0.69 -20.33 5.07 -421.95 -2.14 -22.46 16 14 C 0.16 5.26 0.70 4.16 0.00 5.27 16 15 C -0.12 -3.48 4.92 30.59 0.15 -3.33 16 16 C 0.09 2.02 6.82 71.98 0.49 2.51 16 17 O -0.59 -13.49 13.66 -148.98 -2.04 -15.52 16 18 C 0.13 4.28 7.40 83.17 0.62 4.90 16 19 N -0.65 -30.00 3.64 -737.92 -2.68 -32.69 16 20 C -0.28 -15.63 11.04 84.03 0.93 -14.70 16 21 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 22 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 23 N -0.97 -62.53 13.70 21.65 0.30 -62.23 16 24 Si 1.09 57.02 25.47 68.60 1.75 58.77 16 25 H -0.30 -15.87 6.97 99.48 0.69 -15.17 16 26 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 27 H -0.26 -12.27 5.59 99.48 0.56 -11.72 16 28 C 0.09 3.88 5.01 83.26 0.42 4.29 16 29 C -0.11 -2.24 4.85 30.58 0.15 -2.09 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 1.01 7.87 -2.38 -0.02 0.99 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.94 8.08 -2.39 -0.02 1.92 16 40 H 0.11 1.79 7.87 -2.38 -0.02 1.77 16 41 H 0.42 10.04 8.67 -92.71 -0.80 9.23 16 42 H 0.08 2.36 8.00 -2.39 -0.02 2.35 16 43 H 0.07 2.52 6.01 -2.39 -0.01 2.50 16 44 H 0.05 1.04 7.90 -2.39 -0.02 1.02 16 45 H 0.07 1.23 7.81 -2.39 -0.02 1.21 16 46 H 0.40 4.69 9.12 -74.06 -0.68 4.01 16 47 H 0.07 2.16 8.13 -2.38 -0.02 2.14 16 48 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 49 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 50 H 0.06 2.46 6.92 -2.38 -0.02 2.44 16 51 H 0.03 1.40 6.05 -2.39 -0.01 1.38 16 52 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -80.96 411.20 -1.05 -82.01 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.79 Total: 21.08 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.55 Total: 6.38 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -4.53 Total: -117.38 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -3.04 Total: -50.85 kcal Atomic # 14 Polarization: 57.02 SS G_CDS: 1.75 Total: 58.77 kcal Total: -80.96 -1.05 -82.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725206070.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.516 kcal (2) G-P(sol) polarization free energy of solvation -80.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds