Wall clock time and date at job start Tue Mar 31 2020 23:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 C 1.52994 * 109.47635 * 120.00090 * 2 1 3 5 5 C 1.52998 * 109.47429 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46956 * 299.99857 * 5 4 2 7 7 C 1.53005 * 109.47290 * 59.99879 * 6 5 4 8 8 H 1.09000 * 109.46853 * 60.00166 * 7 6 5 9 9 O 1.42894 * 109.47098 * 179.97438 * 7 6 5 10 10 C 1.42904 * 114.00043 * 269.99931 * 9 7 6 11 11 C 1.50697 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00470 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99841 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99957 * 185.01678 * 13 11 10 15 15 C 1.53001 * 113.28235 * 68.29356 * 14 13 11 16 16 C 1.53000 * 109.46950 * 45.65858 * 15 14 13 17 17 O 1.42894 * 109.46885 * 174.95256 * 16 15 14 18 18 C 1.53501 * 114.20499 * 295.22900 * 14 13 11 19 19 N 1.47066 * 87.98504 * 220.34789 * 18 14 13 20 20 C 1.36935 * 136.05607 * 207.08518 * 19 18 14 21 21 H 1.08000 * 120.00039 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99892 * 179.97438 * 20 19 18 23 23 N 1.31615 * 119.99865 * 359.72461 * 22 20 19 24 24 Si 1.86801 * 119.99661 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47427 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46971 * 120.00253 * 24 22 20 27 27 H 1.48501 * 109.46777 * 240.00121 * 24 22 20 28 28 C 1.47064 * 87.88580 * 27.34037 * 19 18 14 29 29 C 1.52994 * 109.47184 * 240.00531 * 2 1 3 30 30 H 1.09008 * 109.46996 * 299.99621 * 1 2 3 31 31 H 1.08993 * 109.47238 * 59.99899 * 1 2 3 32 32 H 1.09000 * 109.47003 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46999 * 59.99907 * 4 2 1 34 34 H 1.09008 * 109.47164 * 300.00185 * 4 2 1 35 35 H 1.09004 * 109.47596 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47377 * 59.99807 * 5 4 2 37 37 H 1.08998 * 109.47514 * 299.99960 * 6 5 4 38 38 H 1.09004 * 109.47430 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.47068 * 60.00334 * 10 9 7 40 40 H 1.08998 * 109.47085 * 300.00112 * 10 9 7 41 41 H 0.96999 * 119.99896 * 5.01561 * 13 11 10 42 42 H 1.09001 * 109.46634 * 165.65682 * 15 14 13 43 43 H 1.09000 * 109.47344 * 285.65513 * 15 14 13 44 44 H 1.09003 * 109.47045 * 294.94788 * 16 15 14 45 45 H 1.08998 * 109.47318 * 54.95146 * 16 15 14 46 46 H 0.96700 * 114.00146 * 179.97438 * 17 16 15 47 47 H 1.09002 * 113.46702 * 105.56427 * 18 14 13 48 48 H 1.09003 * 113.46388 * 335.12885 * 18 14 13 49 49 H 0.96999 * 119.99522 * 179.97438 * 23 22 20 50 50 H 1.09002 * 113.46847 * 87.43528 * 28 19 18 51 51 H 1.08994 * 113.47045 * 217.87465 * 28 19 18 52 52 H 1.09001 * 109.47486 * 59.99368 * 29 2 1 53 53 H 1.08998 * 109.47194 * 299.99446 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5701 -0.7206 1.2494 6 6 4.0805 -1.4415 0.0002 7 6 3.5704 -0.7203 -1.2491 8 1 3.9334 0.3075 -1.2489 9 8 4.0477 -1.3933 -2.4158 10 6 5.3072 -0.9125 -2.8898 11 6 5.7115 -1.6883 -4.1168 12 8 4.9918 -2.5662 -4.5437 13 7 6.8730 -1.4066 -4.7399 14 6 7.2147 -2.0834 -5.9935 15 6 6.3169 -1.6776 -7.1641 16 6 6.1589 -0.1559 -7.1819 17 8 5.4187 0.2326 -8.3408 18 6 7.4218 -3.5980 -5.8548 19 7 8.5578 -3.4750 -6.7808 20 6 9.1908 -4.2924 -7.6787 21 1 8.8479 -5.3066 -7.8208 22 6 10.2728 -3.8171 -8.4071 23 7 10.6866 -2.5791 -8.2386 24 14 11.1359 -4.9319 -9.6325 25 1 10.4777 -6.2631 -9.6396 26 1 11.0550 -4.3330 -10.9888 27 1 12.5607 -5.0857 -9.2434 28 6 8.7186 -2.0899 -6.3134 29 6 2.0400 -0.7211 -1.2493 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -1.7489 1.2491 34 1 1.6767 -0.2074 2.1392 35 1 3.9335 -1.2349 2.1392 36 1 3.9330 0.3072 1.2496 37 1 3.7176 -2.4693 -0.0001 38 1 5.1706 -1.4407 0.0001 39 1 6.0610 -1.0415 -2.1132 40 1 5.2214 0.1448 -3.1408 41 1 7.4826 -0.7558 -4.3583 42 1 6.7688 -2.0070 -8.0997 43 1 5.3380 -2.1432 -7.0496 44 1 5.6264 0.1646 -6.2864 45 1 7.1433 0.3114 -7.2060 46 1 5.2796 1.1864 -8.4173 47 1 6.5970 -4.1874 -6.2554 48 1 7.7120 -3.9062 -4.8504 49 1 11.4429 -2.2471 -8.7473 50 1 9.3506 -2.0006 -5.4298 51 1 8.9986 -1.3945 -7.1046 52 1 1.6766 -0.2073 -2.1392 53 1 1.6767 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725206071.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:30 Heat of formation + Delta-G solvation = -119.629799 kcal Electronic energy + Delta-G solvation = -30703.106700 eV Core-core repulsion = 26574.956904 eV Total energy + Delta-G solvation = -4128.149796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.57795 -40.36349 -39.34220 -37.74374 -37.48418 -35.31064 -33.88894 -33.19979 -32.05390 -31.10449 -29.32678 -28.26539 -27.27145 -26.64840 -25.07246 -23.39542 -23.30738 -22.20382 -21.83429 -20.69118 -20.22914 -18.78690 -18.48341 -18.21158 -17.65686 -16.92921 -16.89253 -16.69259 -16.36318 -15.96898 -15.73921 -15.69324 -15.32510 -15.12514 -14.97493 -14.69767 -14.41918 -14.07407 -13.87487 -13.66230 -13.46098 -13.40823 -13.27457 -13.22094 -12.95114 -12.79992 -12.72417 -12.54682 -12.37978 -12.19511 -12.05201 -11.94001 -11.81871 -11.75737 -11.40925 -11.29800 -11.25536 -11.23791 -10.99162 -10.91302 -10.60058 -10.38419 -10.08937 -8.99509 -7.95936 -5.29449 1.44800 1.46292 1.56392 1.66395 1.80103 2.44871 2.94715 3.14297 3.26441 3.39739 3.55466 3.73099 3.78954 3.87666 4.04736 4.12147 4.18078 4.20543 4.26232 4.27687 4.28499 4.30659 4.38084 4.46592 4.54647 4.55607 4.67200 4.69363 4.72385 4.79394 4.82618 4.86273 5.00770 5.01979 5.08854 5.10516 5.11623 5.12910 5.16288 5.19007 5.31704 5.31896 5.41359 5.42423 5.43811 5.58949 5.68869 5.86802 6.22038 6.66770 6.87189 6.92948 7.34920 7.52968 8.51229 9.21602 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020392 B = 0.002183 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.734217 B =12824.598559 C =13575.508667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.142 4.142 7 C 0.086 3.914 8 H 0.083 0.917 9 O -0.391 6.391 10 C 0.050 3.950 11 C 0.509 3.491 12 O -0.564 6.564 13 N -0.700 5.700 14 C 0.153 3.847 15 C -0.086 4.086 16 C 0.096 3.904 17 O -0.594 6.594 18 C 0.124 3.876 19 N -0.632 5.632 20 C -0.232 4.232 21 H 0.079 0.921 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.980 3.020 25 H -0.270 1.270 26 H -0.289 1.289 27 H -0.287 1.287 28 C 0.167 3.833 29 C -0.111 4.111 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.419 0.581 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.397 0.603 47 H 0.030 0.970 48 H 0.039 0.961 49 H 0.252 0.748 50 H 0.037 0.963 51 H 0.057 0.943 52 H 0.063 0.937 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 14.080 20.553 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.180 4.180 7 C 0.029 3.971 8 H 0.101 0.899 9 O -0.310 6.310 10 C -0.029 4.029 11 C 0.295 3.705 12 O -0.442 6.442 13 N -0.355 5.355 14 C 0.065 3.935 15 C -0.125 4.125 16 C 0.018 3.982 17 O -0.403 6.403 18 C -0.002 4.002 19 N -0.358 5.358 20 C -0.360 4.360 21 H 0.097 0.903 22 C -0.252 4.252 23 N -0.593 5.593 24 Si 0.808 3.192 25 H -0.195 1.195 26 H -0.216 1.216 27 H -0.214 1.214 28 C 0.041 3.959 29 C -0.149 4.149 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.256 0.744 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.247 0.753 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.076 0.924 52 H 0.081 0.919 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.453 12.561 19.811 28.090 hybrid contribution 1.161 -0.109 -0.526 1.279 sum -14.292 12.453 19.285 27.041 Atomic orbital electron populations 1.21818 0.94549 1.01809 1.02272 1.21077 0.96001 0.99733 0.93389 0.89950 1.21650 0.95447 1.00571 0.97767 1.21480 0.95649 1.01188 0.96677 1.22052 1.01032 0.99921 0.94981 1.22361 0.94843 0.96043 0.83840 0.89879 1.88037 1.35558 1.61788 1.45584 1.22343 0.88250 0.98382 0.93943 1.21013 0.80705 0.83482 0.85253 1.90721 1.53412 1.32953 1.67076 1.45699 1.21147 1.45052 1.23606 1.21928 0.95444 0.92341 0.83785 1.21122 0.98376 0.96300 0.96679 1.21930 0.95185 0.93588 0.87479 1.86455 1.77241 1.30445 1.46162 1.22707 0.89530 0.94979 0.93027 1.45578 1.35307 1.12297 1.42624 1.19250 1.09587 0.94220 1.12946 0.90288 1.25589 0.99240 0.98361 1.02035 1.69949 1.28611 1.15874 1.44899 0.84989 0.77913 0.78133 0.78143 1.19469 1.21608 1.21373 1.22305 0.89497 0.87506 0.96582 1.21659 0.93262 1.01092 0.98846 0.91411 0.92627 0.93224 0.92733 0.90481 0.91069 0.90563 0.92959 0.91337 0.87714 0.86982 0.74360 0.92852 0.92829 0.92190 0.92644 0.75288 0.95114 0.94318 0.93883 0.94522 0.92435 0.91859 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 71.98 0.66 -0.90 16 2 C -0.08 -0.94 2.72 -10.80 -0.03 -0.97 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -1.23 5.20 30.59 0.16 -1.07 16 5 C -0.11 -1.17 5.92 30.59 0.18 -0.99 16 6 C -0.14 -2.13 5.54 30.60 0.17 -1.96 16 7 C 0.09 1.43 2.61 30.61 0.08 1.51 16 8 H 0.08 0.98 7.78 -2.39 -0.02 0.96 16 9 O -0.39 -9.59 9.52 -129.94 -1.24 -10.83 16 10 C 0.05 0.96 6.23 71.24 0.44 1.40 16 11 C 0.51 14.91 7.46 87.66 0.65 15.56 16 12 O -0.56 -22.88 15.25 16.02 0.24 -22.64 16 13 N -0.70 -19.33 4.34 -421.94 -1.83 -21.16 16 14 C 0.15 5.85 0.83 4.16 0.00 5.86 16 15 C -0.09 -3.42 4.96 30.59 0.15 -3.27 16 16 C 0.10 2.93 6.65 71.98 0.48 3.40 16 17 O -0.59 -18.19 13.66 -148.98 -2.03 -20.22 16 18 C 0.12 5.71 7.20 83.18 0.60 6.31 16 19 N -0.63 -33.61 3.60 -737.86 -2.65 -36.26 16 20 C -0.23 -13.46 10.75 84.04 0.90 -12.56 16 21 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 22 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 23 N -0.95 -55.78 11.50 21.65 0.25 -55.53 16 24 Si 0.98 46.25 29.55 68.60 2.03 48.27 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 28 C 0.17 7.60 6.72 83.27 0.56 8.16 16 29 C -0.11 -1.83 4.86 30.61 0.15 -1.68 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.95 7.87 -2.38 -0.02 0.93 16 39 H 0.11 1.43 7.87 -2.39 -0.02 1.41 16 40 H 0.11 1.36 8.08 -2.39 -0.02 1.34 16 41 H 0.42 8.14 8.74 -92.71 -0.81 7.33 16 42 H 0.05 2.54 7.94 -2.39 -0.02 2.52 16 43 H 0.05 2.30 7.61 -2.39 -0.02 2.29 16 44 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.40 7.30 9.12 -74.06 -0.68 6.63 16 47 H 0.03 1.50 8.12 -2.39 -0.02 1.48 16 48 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 50 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.06 2.89 7.09 -2.39 -0.02 2.87 16 52 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -78.97 419.02 -0.20 -79.17 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.60 Total: 23.28 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.63 Total: 15.92 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -4.23 Total: -112.96 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -3.03 Total: -53.69 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.97 -0.20 -79.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725206071.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.461 kcal (2) G-P(sol) polarization free energy of solvation -78.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds