Wall clock time and date at job start Tue Mar 31 2020 23:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47252 * 2 1 4 4 C 1.53000 * 109.47084 * 239.99894 * 2 1 3 5 5 C 1.52999 * 109.47329 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46729 * 60.00265 * 5 4 2 7 7 C 1.53000 * 109.46998 * 299.99937 * 6 5 4 8 8 H 1.08999 * 109.46887 * 179.97438 * 7 6 5 9 9 O 1.42898 * 109.47262 * 299.99969 * 7 6 5 10 10 C 1.42898 * 114.00164 * 270.00390 * 9 7 6 11 11 C 1.50696 * 109.47460 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99665 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00187 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00153 * 174.97848 * 13 11 10 15 15 C 1.53000 * 112.94480 * 65.41583 * 14 13 11 16 16 C 1.53007 * 109.47109 * 49.47212 * 15 14 13 17 17 O 1.42896 * 109.47244 * 174.97473 * 16 15 14 18 18 C 1.53942 * 113.83954 * 197.10272 * 14 13 11 19 19 N 1.47582 * 86.11508 * 90.75489 * 18 14 13 20 20 C 1.36940 * 134.48989 * 204.64275 * 19 18 14 21 21 H 1.08004 * 119.99894 * 179.97438 * 20 19 18 22 22 C 1.38817 * 120.00001 * 359.97438 * 20 19 18 23 23 N 1.31618 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47150 * 60.00577 * 24 22 20 26 26 H 1.48508 * 109.46700 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47374 * 299.99783 * 24 22 20 28 28 C 1.47573 * 91.01689 * 24.63833 * 19 18 14 29 29 C 1.52996 * 109.47150 * 120.00169 * 2 1 3 30 30 H 1.08997 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47108 * 300.00081 * 1 2 3 32 32 H 1.08999 * 109.46930 * 59.99676 * 1 2 3 33 33 H 1.09007 * 109.47366 * 59.99729 * 4 2 1 34 34 H 1.08997 * 109.47162 * 300.00161 * 4 2 1 35 35 H 1.08997 * 109.47368 * 300.00327 * 5 4 2 36 36 H 1.09001 * 109.46867 * 179.97438 * 5 4 2 37 37 H 1.08995 * 109.47106 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.47146 * 59.99925 * 6 5 4 39 39 H 1.09003 * 109.47416 * 59.99488 * 10 9 7 40 40 H 1.09003 * 109.46953 * 299.99909 * 10 9 7 41 41 H 0.97002 * 120.00479 * 354.97816 * 13 11 10 42 42 H 1.08992 * 109.47378 * 289.47291 * 15 14 13 43 43 H 1.08999 * 109.47359 * 169.46493 * 15 14 13 44 44 H 1.09001 * 109.46829 * 54.96621 * 16 15 14 45 45 H 1.08998 * 109.46724 * 294.97280 * 16 15 14 46 46 H 0.96701 * 114.00056 * 179.97438 * 17 16 15 47 47 H 1.09008 * 113.76976 * 205.04614 * 18 14 13 48 48 H 1.08996 * 113.77143 * 336.45133 * 18 14 13 49 49 H 0.96998 * 119.99714 * 180.02562 * 23 22 20 50 50 H 1.08999 * 113.77154 * 221.06117 * 28 19 18 51 51 H 1.09000 * 113.87160 * 89.67521 * 28 19 18 52 52 H 1.08997 * 109.47181 * 59.99787 * 29 2 1 53 53 H 1.09003 * 109.46911 * 299.99870 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7204 1.2489 8 1 3.9338 -1.2343 2.1388 9 8 4.0464 0.6270 1.2487 10 6 5.3061 0.7986 1.9011 11 6 5.7096 2.2493 1.8408 12 8 4.9890 3.0568 1.2934 13 7 6.8706 2.6495 2.3960 14 6 7.3161 4.0366 2.2426 15 6 6.3943 5.0396 2.9391 16 6 6.1332 4.5805 4.3751 17 8 5.3694 5.5742 5.0615 18 6 8.8091 4.2484 2.5522 19 7 9.0399 3.9917 1.1173 20 6 10.1029 3.5390 0.3822 21 1 10.0138 3.4358 -0.6892 22 6 11.2951 3.2126 1.0142 23 7 11.4035 3.3379 2.3199 24 14 12.7448 2.5943 0.0115 25 1 13.1362 3.6268 -0.9816 26 1 13.8898 2.3174 0.9158 27 1 12.3609 1.3468 -0.6965 28 6 7.6651 4.4188 0.7928 29 6 2.0400 -0.7213 1.2492 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -0.2075 -2.1393 34 1 1.6767 -1.7489 -1.2492 35 1 3.9330 0.3070 -1.2498 36 1 3.9332 -1.2350 -2.1394 37 1 5.1704 -1.4418 -0.0008 38 1 3.7175 -2.4695 -0.0001 39 1 6.0602 0.1910 1.4007 40 1 5.2213 0.4876 2.9423 41 1 7.4113 2.0191 2.8971 42 1 5.4492 5.1000 2.3996 43 1 6.8686 6.0209 2.9521 44 1 7.0838 4.4341 4.8882 45 1 5.5795 3.6418 4.3614 46 1 5.1659 5.3492 5.9797 47 1 9.0539 5.2647 2.8615 48 1 9.2339 3.4888 3.2083 49 1 12.2366 3.1102 2.7614 50 1 7.1764 3.7952 0.0443 51 1 7.5719 5.4847 0.5849 52 1 1.6767 -1.7489 1.2492 53 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725206072.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:34 Heat of formation + Delta-G solvation = -119.647775 kcal Electronic energy + Delta-G solvation = -31446.325493 eV Core-core repulsion = 27318.174917 eV Total energy + Delta-G solvation = -4128.150576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.51587 -40.41989 -39.15196 -37.70411 -37.14076 -35.14941 -33.78980 -33.14889 -32.19316 -31.19660 -29.09371 -28.35244 -27.23919 -26.83441 -25.10144 -23.43722 -22.89867 -22.19591 -21.98901 -20.53116 -20.20135 -18.85096 -18.33906 -18.21008 -17.37015 -17.04643 -16.80515 -16.38702 -16.31878 -16.05949 -15.86467 -15.64634 -15.24631 -15.10997 -14.94267 -14.61152 -14.40303 -14.20449 -14.01523 -13.61734 -13.29165 -13.21316 -13.12430 -13.06913 -12.98284 -12.77602 -12.71026 -12.68684 -12.58894 -12.28138 -12.21564 -11.84339 -11.80014 -11.67930 -11.43813 -11.33762 -11.18365 -11.02065 -10.86673 -10.85521 -10.55961 -10.37814 -9.98169 -8.93694 -7.91880 -5.24557 1.46235 1.48300 1.54494 1.64930 1.89770 2.45815 3.04857 3.19526 3.27104 3.38464 3.59951 3.76220 3.79814 3.87956 3.94717 4.15527 4.22332 4.23424 4.29671 4.32422 4.33305 4.39264 4.42495 4.53929 4.55609 4.63345 4.69222 4.71803 4.74214 4.83882 4.85069 4.91736 4.94233 4.95722 5.01483 5.07320 5.12980 5.16912 5.17950 5.25440 5.34393 5.37387 5.44228 5.44815 5.45969 5.65973 5.73973 5.89549 6.24250 6.66747 6.91494 6.93147 7.33489 7.57391 8.52015 9.24174 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010201 B = 0.003212 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.252626 B = 8716.104995 C =10685.002145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.044 0.956 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.139 4.139 7 C 0.080 3.920 8 H 0.083 0.917 9 O -0.376 6.376 10 C 0.049 3.951 11 C 0.512 3.488 12 O -0.560 6.560 13 N -0.687 5.687 14 C 0.157 3.843 15 C -0.109 4.109 16 C 0.093 3.907 17 O -0.592 6.592 18 C 0.173 3.827 19 N -0.629 5.629 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.054 4.054 23 N -0.945 5.945 24 Si 0.975 3.025 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.278 1.278 28 C 0.118 3.882 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.411 0.589 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.396 0.604 47 H 0.033 0.967 48 H 0.065 0.935 49 H 0.252 0.748 50 H 0.035 0.965 51 H 0.046 0.954 52 H 0.098 0.902 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.426 -12.177 3.898 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.063 0.937 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.177 4.177 7 C 0.023 3.977 8 H 0.101 0.899 9 O -0.295 6.295 10 C -0.031 4.031 11 C 0.299 3.701 12 O -0.438 6.438 13 N -0.340 5.340 14 C 0.068 3.932 15 C -0.149 4.149 16 C 0.016 3.984 17 O -0.400 6.400 18 C 0.048 3.952 19 N -0.356 5.356 20 C -0.366 4.366 21 H 0.091 0.909 22 C -0.247 4.247 23 N -0.593 5.593 24 Si 0.803 3.197 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.204 1.204 28 C -0.009 4.009 29 C -0.142 4.142 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.248 0.752 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.246 0.754 47 H 0.051 0.949 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.064 0.936 52 H 0.116 0.884 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.680 -11.293 2.770 22.003 hybrid contribution 1.671 -0.412 0.008 1.721 sum -17.009 -11.706 2.778 20.834 Atomic orbital electron populations 1.21800 0.94331 1.02349 1.01522 1.21021 0.95872 0.99043 0.95126 0.93718 1.21545 0.94688 1.00998 0.97219 1.21410 0.96426 0.99880 0.97838 1.22036 1.00537 1.00175 0.94921 1.22416 0.95381 0.81892 0.98034 0.89916 1.88054 1.34647 1.28734 1.78090 1.22250 0.88404 0.92189 1.00210 1.20797 0.80579 0.91040 0.77696 1.90676 1.52903 1.55844 1.44407 1.45365 1.22248 1.11066 1.55274 1.21766 0.94002 0.81975 0.95433 1.21584 0.99684 0.98303 0.95286 1.21920 0.94602 0.90177 0.91734 1.86423 1.75729 1.47163 1.30684 1.22444 0.87364 0.98318 0.87112 1.46177 1.09863 1.74918 1.04625 1.19236 0.90642 1.35829 0.90843 0.90918 1.25455 0.99759 1.02512 0.97013 1.69916 1.26407 1.54786 1.08231 0.85222 0.78824 0.78223 0.77417 1.21081 1.21547 1.20359 1.22924 0.85038 0.97251 0.95657 1.21700 0.92422 1.02017 0.98033 0.91306 0.92906 0.93046 0.92688 0.90396 0.94455 0.91833 0.92418 0.88846 0.89388 0.87297 0.75226 0.91857 0.90854 0.92615 0.93477 0.75393 0.94902 0.91687 0.93933 0.94670 0.93628 0.88364 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.19 71.98 0.66 -1.56 16 2 C -0.09 -1.79 2.57 -10.79 -0.03 -1.82 16 3 H 0.04 1.22 7.68 -2.39 -0.02 1.20 16 4 C -0.11 -1.93 5.20 30.59 0.16 -1.77 16 5 C -0.12 -2.48 5.78 30.60 0.18 -2.31 16 6 C -0.14 -2.45 5.63 30.60 0.17 -2.28 16 7 C 0.08 1.47 2.92 30.61 0.09 1.56 16 8 H 0.08 1.14 7.79 -2.39 -0.02 1.12 16 9 O -0.38 -10.03 8.17 -129.94 -1.06 -11.09 16 10 C 0.05 1.18 6.23 71.23 0.44 1.62 16 11 C 0.51 16.85 7.35 87.66 0.64 17.50 16 12 O -0.56 -23.12 14.67 16.00 0.23 -22.89 16 13 N -0.69 -22.35 4.43 -427.59 -1.89 -24.24 16 14 C 0.16 5.91 0.66 5.36 0.00 5.91 16 15 C -0.11 -3.76 4.83 30.60 0.15 -3.61 16 16 C 0.09 2.63 6.71 71.98 0.48 3.11 16 17 O -0.59 -15.86 13.66 -148.98 -2.03 -17.90 16 18 C 0.17 7.74 6.81 86.48 0.59 8.33 16 19 N -0.63 -32.06 3.70 -716.22 -2.65 -34.71 16 20 C -0.24 -13.25 10.70 84.03 0.90 -12.35 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 23 N -0.95 -53.60 11.38 21.65 0.25 -53.36 16 24 Si 0.97 44.67 29.55 68.60 2.03 46.69 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 27 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 28 C 0.12 5.26 7.88 86.48 0.68 5.94 16 29 C -0.10 -1.71 4.95 30.61 0.15 -1.56 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 1.05 7.68 -2.39 -0.02 1.03 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.09 7.87 -2.39 -0.02 1.07 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.95 7.87 -2.39 -0.02 1.93 16 40 H 0.11 1.83 8.09 -2.39 -0.02 1.81 16 41 H 0.41 11.79 8.67 -92.71 -0.80 10.99 16 42 H 0.06 2.42 7.00 -2.39 -0.02 2.40 16 43 H 0.07 2.56 7.96 -2.39 -0.02 2.54 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.25 7.68 -2.39 -0.02 1.23 16 46 H 0.40 6.28 9.12 -74.06 -0.68 5.61 16 47 H 0.03 1.53 7.97 -2.38 -0.02 1.51 16 48 H 0.06 3.07 7.11 -2.39 -0.02 3.05 16 49 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 50 H 0.03 1.66 7.65 -2.39 -0.02 1.64 16 51 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 52 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -72.81 415.60 0.02 -72.78 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.59 Total: 30.47 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 5.74 Total: 14.23 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.30 Total: -112.30 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -2.86 Total: -51.87 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.81 0.02 -72.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725206072.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.866 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds