Wall clock time and date at job start Tue Mar 31 2020 23:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.33258 * 2 1 4 4 C 1.54481 * 110.36772 * 122.37112 * 2 1 3 5 5 C 1.54510 * 104.06085 * 142.81005 * 4 2 1 6 6 C 1.54484 * 104.06388 * 359.97438 * 5 4 2 7 7 H 1.09001 * 110.37469 * 94.85417 * 6 5 4 8 8 C 1.52999 * 110.37400 * 217.19362 * 6 5 4 9 9 C 1.52998 * 109.47165 * 181.83217 * 8 6 5 10 10 C 1.50705 * 109.46873 * 179.97438 * 9 8 6 11 11 O 1.21276 * 120.00192 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99661 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99605 * 174.88740 * 12 10 9 14 14 C 1.52995 * 109.46305 * 302.69113 * 13 12 10 15 15 O 1.42901 * 109.47373 * 300.73214 * 14 13 12 16 16 C 1.53050 * 109.45724 * 182.73375 * 13 12 10 17 17 C 1.53188 * 109.31259 * 301.34628 * 16 13 12 18 18 N 1.46933 * 108.77476 * 305.36727 * 17 16 13 19 19 C 1.36935 * 120.62941 * 233.58741 * 18 17 16 20 20 H 1.08012 * 120.00004 * 31.72585 * 19 18 17 21 21 C 1.38811 * 120.00055 * 211.72351 * 19 18 17 22 22 N 1.31612 * 120.00087 * 11.03044 * 21 19 18 23 23 Si 1.86805 * 119.99869 * 191.03203 * 21 19 18 24 24 H 1.48507 * 109.46979 * 90.00207 * 23 21 19 25 25 H 1.48499 * 109.46916 * 210.00085 * 23 21 19 26 26 H 1.48492 * 109.47239 * 329.99992 * 23 21 19 27 27 C 1.46923 * 118.73860 * 53.60553 * 18 17 16 28 28 C 1.53039 * 109.46170 * 62.66565 * 13 12 10 29 29 O 1.44424 * 110.37116 * 237.74939 * 2 1 3 30 30 H 1.08999 * 109.47379 * 180.80041 * 1 2 3 31 31 H 1.08998 * 109.47317 * 60.79154 * 1 2 3 32 32 H 1.09010 * 109.47129 * 300.79704 * 1 2 3 33 33 H 1.09009 * 110.50996 * 261.44634 * 4 2 1 34 34 H 1.08991 * 110.51718 * 24.16059 * 4 2 1 35 35 H 1.09001 * 110.51177 * 241.35006 * 5 4 2 36 36 H 1.09004 * 110.62935 * 118.69795 * 5 4 2 37 37 H 1.08997 * 109.47072 * 301.83499 * 8 6 5 38 38 H 1.09009 * 109.47243 * 61.82768 * 8 6 5 39 39 H 1.08999 * 109.47058 * 299.99390 * 9 8 6 40 40 H 1.08995 * 109.47392 * 59.99850 * 9 8 6 41 41 H 0.96997 * 120.00214 * 354.89241 * 12 10 9 42 42 H 1.09001 * 109.47184 * 60.73262 * 14 13 12 43 43 H 1.09001 * 109.47222 * 180.73272 * 14 13 12 44 44 H 0.96698 * 114.00113 * 179.97438 * 15 14 13 45 45 H 1.08998 * 109.49797 * 61.29829 * 16 13 12 46 46 H 1.09000 * 109.49439 * 181.39037 * 16 13 12 47 47 H 1.09003 * 109.58483 * 185.58223 * 17 16 13 48 48 H 1.08994 * 109.58863 * 65.14875 * 17 16 13 49 49 H 0.97001 * 120.00172 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.58443 * 186.60472 * 27 18 17 51 51 H 1.08998 * 109.58396 * 66.18650 * 27 18 17 52 52 H 1.08998 * 109.49696 * 178.60322 * 28 13 12 53 53 H 1.08994 * 109.49781 * 298.70436 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0677 -0.7754 1.2232 5 6 3.3177 -1.5065 0.6844 6 6 3.3870 -1.0868 -0.8008 7 1 4.0520 -0.2319 -0.9229 8 6 3.8596 -2.2584 -1.6638 9 6 3.9645 -1.8078 -3.1222 10 6 4.4307 -2.9617 -3.9721 11 8 4.6564 -4.0385 -3.4618 12 7 4.5959 -2.7972 -5.2996 13 6 5.1551 -3.8833 -6.1082 14 6 6.5291 -4.2723 -5.5591 15 8 7.3959 -3.1368 -5.5964 16 6 5.2994 -3.4167 -7.5587 17 6 3.9275 -2.9955 -8.0943 18 7 2.9856 -4.1079 -7.9091 19 6 2.2595 -4.5905 -8.9651 20 1 2.6753 -4.5676 -9.9617 21 6 0.9893 -5.1092 -8.7547 22 7 0.3949 -4.9432 -7.5922 23 14 0.1235 -6.0428 -10.1215 24 1 0.4585 -7.4863 -10.0243 25 1 -1.3449 -5.8654 -9.9890 26 1 0.5685 -5.5189 -11.4378 27 6 2.8373 -4.6923 -6.5693 28 6 4.2215 -5.0946 -6.0507 29 8 2.0327 -0.7225 -1.1450 30 1 -0.3634 -1.0275 0.0144 31 1 -0.3634 0.5015 -0.8970 32 1 -0.3634 0.5262 0.8828 33 1 2.3430 -0.0861 2.0215 34 1 1.3275 -1.4935 1.5757 35 1 3.1954 -2.5862 0.7705 36 1 4.2119 -1.1808 1.2157 37 1 4.8364 -2.5948 -1.3163 38 1 3.1448 -3.0778 -1.5872 39 1 2.9877 -1.4716 -3.4697 40 1 4.6793 -0.9885 -3.1988 41 1 4.3446 -1.9597 -5.7195 42 1 6.4251 -4.6164 -4.5301 43 1 6.9510 -5.0715 -6.1686 44 1 8.2864 -3.3106 -5.2618 45 1 5.9828 -2.5687 -7.6018 46 1 5.6923 -4.2323 -8.1658 47 1 4.0069 -2.7567 -9.1549 48 1 3.5737 -2.1222 -7.5464 49 1 -0.4929 -5.3053 -7.4453 50 1 2.1973 -5.5730 -6.6236 51 1 2.3946 -3.9573 -5.8971 52 1 4.6245 -5.8943 -6.6720 53 1 4.1376 -5.4406 -5.0206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733915624.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:52 Heat of formation + Delta-G solvation = -147.657658 kcal Electronic energy + Delta-G solvation = -31651.691282 eV Core-core repulsion = 27522.326107 eV Total energy + Delta-G solvation = -4129.365175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.52009 -40.51193 -38.99152 -37.42528 -35.61898 -34.84711 -33.63325 -33.14207 -32.31108 -31.55301 -31.14044 -28.40963 -27.37248 -25.65727 -24.25764 -23.90938 -22.68466 -22.23897 -21.70053 -21.32557 -20.14267 -18.84732 -18.23166 -17.90466 -17.40785 -17.05127 -16.89563 -16.46154 -16.25755 -15.89968 -15.73891 -15.23490 -15.20902 -14.91580 -14.76653 -14.62120 -14.34669 -14.25176 -13.95289 -13.70960 -13.36405 -13.31309 -13.20522 -13.06428 -12.95880 -12.64184 -12.59204 -12.50948 -12.46647 -12.21749 -12.03931 -12.02579 -11.88248 -11.75220 -11.63978 -11.48098 -11.42688 -11.27601 -11.00852 -10.63816 -10.56172 -10.30926 -9.86073 -8.61923 -7.86274 -5.38215 1.45644 1.46777 1.55833 1.80737 2.33430 2.50227 2.92611 3.26872 3.33249 3.61423 3.71668 3.72302 3.80995 3.97353 4.01253 4.03879 4.06021 4.18145 4.27510 4.34665 4.44061 4.48523 4.50766 4.54133 4.59382 4.65187 4.68305 4.71662 4.76246 4.77205 4.85524 4.95658 4.96957 4.98602 5.03739 5.12526 5.16983 5.19005 5.19851 5.21605 5.27143 5.31773 5.32949 5.46298 5.63400 5.69227 5.77755 6.06400 6.40647 6.73149 6.91523 7.15317 7.40950 7.85251 8.38925 9.19090 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.003168 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.323375 B = 8836.262468 C =10870.355072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.074 3.926 7 H 0.087 0.913 8 C -0.087 4.087 9 C -0.130 4.130 10 C 0.513 3.487 11 O -0.578 6.578 12 N -0.702 5.702 13 C 0.193 3.807 14 C 0.077 3.923 15 O -0.572 6.572 16 C -0.117 4.117 17 C 0.141 3.859 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.198 3.802 28 C -0.139 4.139 29 O -0.398 6.398 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.404 0.596 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.392 0.608 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.020 0.980 49 H 0.248 0.752 50 H 0.043 0.957 51 H -0.008 1.008 52 H 0.058 0.942 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.408 11.171 16.000 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.003 3.997 3 H 0.098 0.902 4 C -0.184 4.184 5 C -0.188 4.188 6 C 0.017 3.983 7 H 0.104 0.896 8 C -0.125 4.125 9 C -0.170 4.170 10 C 0.301 3.699 11 O -0.459 6.459 12 N -0.352 5.352 13 C 0.107 3.893 14 C -0.002 4.002 15 O -0.379 6.379 16 C -0.156 4.156 17 C 0.016 3.984 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.072 3.928 28 C -0.179 4.179 29 O -0.318 6.318 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.135 0.865 41 H 0.240 0.760 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.241 0.759 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.037 0.963 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.010 0.990 52 H 0.076 0.924 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.785 10.613 15.919 21.963 hybrid contribution -0.644 -0.762 -0.552 1.140 sum 10.142 9.851 15.367 20.882 Atomic orbital electron populations 1.21840 0.93216 1.02399 1.03046 1.23182 0.95603 0.95897 0.85031 0.90212 1.23001 0.97340 0.99890 0.98211 1.22995 0.99604 1.01349 0.94885 1.23113 0.84378 0.96769 0.94048 0.89555 1.21303 1.01956 0.96696 0.92583 1.21604 1.03575 0.96716 0.95077 1.21084 0.76102 0.90087 0.82611 1.90570 1.53049 1.28588 1.73697 1.45928 1.64036 1.17829 1.07420 1.20164 0.90790 0.87191 0.91169 1.22412 0.89357 0.88176 1.00285 1.86400 1.27035 1.36321 1.88187 1.22071 0.98133 1.02221 0.93200 1.21068 0.89016 0.89412 0.98910 1.44251 1.46967 1.36137 1.05764 1.19529 0.95164 1.35236 0.89387 0.91396 1.25952 0.96893 1.02625 0.99113 1.70168 1.14254 1.48845 1.24933 0.85245 0.77098 0.78441 0.79514 1.21374 1.22244 1.18959 1.20264 0.92109 0.95883 0.84547 1.22350 0.97677 0.97218 1.00640 1.89185 1.28048 1.75023 1.39568 0.93080 0.92691 0.88961 0.88417 0.90957 0.91473 0.88424 0.89449 0.93294 0.89432 0.86511 0.76046 0.93033 0.92416 0.75908 0.89215 0.91203 0.92224 0.96252 0.94308 0.93832 0.98962 0.92366 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.52 71.98 0.69 -1.86 16 2 C 0.06 1.08 3.92 31.10 0.12 1.21 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.15 -2.13 6.63 31.61 0.21 -1.92 16 5 C -0.15 -2.43 6.63 31.61 0.21 -2.22 16 6 C 0.07 1.49 3.27 31.10 0.10 1.59 16 7 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 8 C -0.09 -2.16 4.14 30.59 0.13 -2.03 16 9 C -0.13 -3.38 5.62 29.85 0.17 -3.21 16 10 C 0.51 17.02 7.24 87.66 0.63 17.66 16 11 O -0.58 -22.39 12.24 -3.02 -0.04 -22.43 16 12 N -0.70 -22.98 3.98 -422.79 -1.68 -24.66 16 13 C 0.19 6.64 0.44 3.63 0.00 6.64 16 14 C 0.08 2.23 5.68 71.98 0.41 2.64 16 15 O -0.57 -13.94 12.84 -148.98 -1.91 -15.85 16 16 C -0.12 -3.90 4.85 30.67 0.15 -3.75 16 17 C 0.14 5.72 6.24 86.36 0.54 6.26 16 18 N -0.61 -30.92 2.98 -699.09 -2.09 -33.01 16 19 C -0.26 -14.65 9.57 84.03 0.80 -13.84 16 20 H 0.07 3.65 7.85 -2.90 -0.02 3.63 16 21 C -0.05 -2.88 5.04 84.86 0.43 -2.46 16 22 N -0.94 -57.34 11.10 21.65 0.24 -57.10 16 23 Si 0.97 45.87 29.57 68.60 2.03 47.90 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C 0.20 10.18 4.99 86.36 0.43 10.61 16 28 C -0.14 -5.85 4.71 30.67 0.14 -5.71 16 29 O -0.40 -10.05 10.69 -148.98 -1.59 -11.64 16 30 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 1.10 7.86 -2.39 -0.02 1.08 16 35 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.05 1.49 8.10 -2.38 -0.02 1.48 16 39 H 0.09 2.50 7.91 -2.39 -0.02 2.48 16 40 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.40 12.25 7.19 -92.71 -0.67 11.58 16 42 H 0.05 1.67 6.18 -2.39 -0.01 1.65 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.39 5.85 9.12 -74.06 -0.68 5.17 16 45 H 0.09 2.59 7.66 -2.39 -0.02 2.57 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 48 H 0.02 0.78 6.89 -2.39 -0.02 0.76 16 49 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 50 H 0.04 2.58 6.14 -2.39 -0.01 2.57 16 51 H -0.01 -0.43 7.74 -2.39 -0.02 -0.45 16 52 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 53 H 0.06 2.76 6.23 -2.39 -0.01 2.74 16 Total: -1.00 -73.09 403.83 -0.32 -73.40 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.44 Total: 33.78 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.16 Total: 9.61 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.53 Total: -114.77 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -3.54 Total: -49.92 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.09 -0.32 -73.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733915624.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.256 kcal (2) G-P(sol) polarization free energy of solvation -73.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds