Wall clock time and date at job start Tue Mar 31 2020 23:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.35050 * 2 1 4 4 C 1.54941 * 110.30733 * 237.85182 * 2 1 3 5 5 C 1.55311 * 100.94028 * 204.63943 * 4 2 1 6 6 C 1.54383 * 102.25257 * 34.13298 * 5 4 2 7 7 H 1.09005 * 109.82873 * 98.24597 * 6 5 4 8 8 C 1.52997 * 109.83257 * 219.12995 * 6 5 4 9 9 C 1.52997 * 109.47399 * 185.00146 * 8 6 5 10 10 C 1.50697 * 109.47580 * 179.97438 * 9 8 6 11 11 O 1.21282 * 119.99674 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00306 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99910 * 174.89143 * 12 10 9 14 14 C 1.53001 * 109.45792 * 302.68332 * 13 12 10 15 15 O 1.42901 * 109.47381 * 300.72952 * 14 13 12 16 16 C 1.53036 * 109.45760 * 182.71137 * 13 12 10 17 17 C 1.53169 * 109.32978 * 301.35849 * 16 13 12 18 18 N 1.46921 * 108.76219 * 305.35566 * 17 16 13 19 19 C 1.36941 * 120.62966 * 233.58521 * 18 17 16 20 20 H 1.08003 * 119.99780 * 31.72567 * 19 18 17 21 21 C 1.38810 * 120.00117 * 211.73032 * 19 18 17 22 22 N 1.31621 * 119.99848 * 11.03240 * 21 19 18 23 23 Si 1.86795 * 120.00144 * 191.03288 * 21 19 18 24 24 H 1.48503 * 109.47363 * 89.99631 * 23 21 19 25 25 H 1.48496 * 109.47354 * 209.99964 * 23 21 19 26 26 H 1.48501 * 109.47122 * 329.99688 * 23 21 19 27 27 C 1.46924 * 118.74230 * 53.61394 * 18 17 16 28 28 C 1.53039 * 109.46175 * 62.65622 * 13 12 10 29 29 O 1.43243 * 107.58906 * 338.64649 * 6 5 4 30 30 H 1.08999 * 109.47231 * 182.14998 * 1 2 3 31 31 H 1.09005 * 109.47014 * 302.14858 * 1 2 3 32 32 H 1.08994 * 109.46947 * 62.14743 * 1 2 3 33 33 H 1.08996 * 111.12540 * 322.56045 * 4 2 1 34 34 H 1.08997 * 111.12321 * 86.72569 * 4 2 1 35 35 H 1.08998 * 110.84559 * 152.32714 * 5 4 2 36 36 H 1.09003 * 110.84808 * 275.74384 * 5 4 2 37 37 H 1.09008 * 109.46963 * 305.00206 * 8 6 5 38 38 H 1.08998 * 109.47133 * 64.99706 * 8 6 5 39 39 H 1.09002 * 109.47072 * 300.00405 * 9 8 6 40 40 H 1.09006 * 109.47031 * 59.99736 * 9 8 6 41 41 H 0.96998 * 119.99335 * 354.88889 * 12 10 9 42 42 H 1.09003 * 109.47520 * 60.73261 * 14 13 12 43 43 H 1.08999 * 109.47002 * 180.73160 * 14 13 12 44 44 H 0.96702 * 114.00347 * 180.02562 * 15 14 13 45 45 H 1.09004 * 109.50098 * 61.29718 * 16 13 12 46 46 H 1.09000 * 109.49969 * 181.39160 * 16 13 12 47 47 H 1.08993 * 109.58747 * 185.57121 * 17 16 13 48 48 H 1.08997 * 109.58999 * 65.14007 * 17 16 13 49 49 H 0.97005 * 119.99764 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.59074 * 186.60078 * 27 18 17 51 51 H 1.08999 * 109.59129 * 66.17167 * 27 18 17 52 52 H 1.08993 * 109.49828 * 178.60680 * 28 13 12 53 53 H 1.09006 * 109.49518 * 298.70473 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0678 -0.7732 -1.2303 5 6 3.4700 -1.2026 -0.7188 6 6 3.2113 -1.4419 0.7843 7 1 3.0640 -2.5059 0.9693 8 6 4.3991 -0.9323 1.6030 9 6 4.1912 -1.2848 3.0772 10 6 5.3615 -0.7835 3.8835 11 8 6.2720 -0.2011 3.3332 12 7 5.3959 -0.9814 5.2162 13 6 6.5823 -0.5948 5.9838 14 6 7.8100 -1.3135 5.4209 15 8 7.6132 -2.7266 5.5009 16 6 6.3903 -0.9863 7.4507 17 6 5.1407 -0.2923 8.0013 18 7 5.2646 1.1540 7.7743 19 6 5.1253 2.0375 8.8112 20 1 5.4275 1.7521 9.8080 21 6 4.5955 3.2997 8.5811 22 7 4.0290 3.5750 7.4254 23 14 4.6867 4.6076 9.9116 24 1 5.9457 5.3806 9.7605 25 1 3.5251 5.5240 9.7855 26 1 4.6620 3.9581 11.2468 27 6 5.5403 1.6344 6.4134 28 6 6.7855 0.9186 5.8806 29 8 2.0286 -0.7167 1.1408 30 1 -0.3633 -1.0269 0.0386 31 1 -0.3633 0.5469 0.8701 32 1 -0.3633 0.4801 -0.9086 33 1 1.4470 -1.6416 -1.4506 34 1 2.1496 -0.1205 -2.0994 35 1 3.7966 -2.1206 -1.2072 36 1 4.1983 -0.4054 -0.8681 37 1 5.3157 -1.4001 1.2433 38 1 4.4771 0.1495 1.4955 39 1 3.2747 -0.8171 3.4368 40 1 4.1133 -2.3668 3.1846 41 1 4.6350 -1.3798 5.6671 42 1 7.9543 -1.0252 4.3796 43 1 8.6908 -1.0360 6.0000 44 1 8.3541 -3.2469 5.1611 45 1 6.2688 -2.0669 7.5260 46 1 7.2622 -0.6767 8.0270 47 1 5.0548 -0.4884 9.0700 48 1 4.2569 -0.6687 7.4864 49 1 3.6591 4.4572 7.2645 50 1 5.7179 2.7096 6.4344 51 1 4.6890 1.4152 5.7690 52 1 7.6536 1.2102 6.4716 53 1 6.9453 1.1939 4.8381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733915629.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:56 Heat of formation + Delta-G solvation = -148.083354 kcal Electronic energy + Delta-G solvation = -31696.283379 eV Core-core repulsion = 27566.899744 eV Total energy + Delta-G solvation = -4129.383635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.52687 -40.56808 -38.98793 -37.43033 -35.61979 -34.81384 -33.63427 -33.17361 -32.31816 -31.55743 -31.13661 -28.41135 -27.35042 -25.66220 -24.33155 -23.91938 -22.62973 -22.43008 -21.69673 -21.05072 -20.14597 -18.84872 -18.24170 -17.97527 -17.90170 -16.91136 -16.79086 -16.47212 -16.37369 -15.78459 -15.39225 -15.26121 -15.13550 -14.94923 -14.77909 -14.66973 -14.42995 -14.20832 -13.95851 -13.70075 -13.37142 -13.22794 -13.22425 -13.16540 -12.96235 -12.64795 -12.62721 -12.59097 -12.47118 -12.22080 -12.03403 -12.01167 -11.87685 -11.75761 -11.66602 -11.59896 -11.43073 -11.27971 -11.01338 -10.56438 -10.42643 -10.30381 -9.86380 -8.62301 -7.86587 -5.38570 1.45537 1.46629 1.55696 1.80574 2.33508 2.50046 2.87569 3.26485 3.32824 3.60418 3.67381 3.71470 3.83332 3.89229 3.98799 4.03639 4.15805 4.20473 4.26208 4.35344 4.39799 4.47976 4.49895 4.54702 4.60502 4.65492 4.72421 4.75051 4.76279 4.80206 4.84315 4.92005 4.97895 4.98347 5.03204 5.07185 5.15270 5.17543 5.18272 5.25678 5.31192 5.31778 5.38698 5.45762 5.63117 5.68771 5.77359 6.21709 6.40364 6.72922 6.90973 7.14993 7.40768 7.84851 8.38560 9.18787 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.003201 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.934870 B = 8744.201053 C =10796.827345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.056 0.944 4 C -0.143 4.143 5 C -0.149 4.149 6 C 0.079 3.921 7 H 0.094 0.906 8 C -0.102 4.102 9 C -0.129 4.129 10 C 0.513 3.487 11 O -0.579 6.579 12 N -0.702 5.702 13 C 0.193 3.807 14 C 0.077 3.923 15 O -0.572 6.572 16 C -0.117 4.117 17 C 0.141 3.859 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.198 3.802 28 C -0.139 4.139 29 O -0.399 6.399 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.404 0.596 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.392 0.608 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.019 0.981 49 H 0.248 0.752 50 H 0.043 0.957 51 H -0.008 1.008 52 H 0.058 0.942 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -15.467 -15.938 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 H 0.074 0.926 4 C -0.180 4.180 5 C -0.187 4.187 6 C 0.022 3.978 7 H 0.112 0.888 8 C -0.141 4.141 9 C -0.169 4.169 10 C 0.301 3.699 11 O -0.460 6.460 12 N -0.352 5.352 13 C 0.107 3.893 14 C -0.002 4.002 15 O -0.379 6.379 16 C -0.156 4.156 17 C 0.016 3.984 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.072 3.928 28 C -0.179 4.179 29 O -0.320 6.320 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.239 0.761 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.241 0.759 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.037 0.963 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.010 0.990 52 H 0.076 0.924 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.052 -14.753 -15.869 21.668 hybrid contribution 0.208 1.123 0.576 1.279 sum 0.156 -13.630 -15.293 20.486 Atomic orbital electron populations 1.21872 0.92914 1.02940 1.02727 1.23143 0.95617 0.95381 0.85499 0.92590 1.23293 0.95781 1.01139 0.97781 1.23176 0.98036 1.03621 0.93860 1.22871 0.84253 0.96358 0.94365 0.88774 1.21634 0.98290 1.01053 0.93082 1.21594 0.96013 1.03719 0.95553 1.21114 0.88299 0.78049 0.82450 1.90567 1.40542 1.43199 1.71657 1.45934 1.19006 1.62988 1.07298 1.20164 0.84920 0.92560 0.91681 1.22414 0.96255 0.81368 1.00189 1.86402 1.47603 1.16729 1.87217 1.22066 0.99778 1.00775 0.93007 1.21061 0.94790 0.83749 0.98805 1.44252 1.82639 1.01325 1.04900 1.19532 1.34151 0.95325 0.90312 0.91391 1.25953 0.97815 1.01681 0.99129 1.70175 1.41700 1.21132 1.25208 0.85241 0.76609 0.78970 0.79453 1.21364 1.22238 1.18965 1.20262 0.91628 0.96685 0.84205 1.22351 0.99751 0.95142 1.00627 1.88453 1.42693 1.65122 1.35701 0.91612 0.93266 0.89405 0.89184 0.88596 0.87960 0.90838 0.89974 0.93584 0.89482 0.86667 0.76066 0.93066 0.92399 0.75909 0.89242 0.91187 0.92210 0.96278 0.94308 0.93807 0.98987 0.92355 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.62 71.98 0.69 -1.78 16 2 C 0.06 1.21 4.08 31.26 0.13 1.34 16 3 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.14 -1.96 6.57 32.05 0.21 -1.75 16 5 C -0.15 -2.26 6.54 31.86 0.21 -2.05 16 6 C 0.08 1.58 3.51 31.06 0.11 1.69 16 7 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 8 C -0.10 -2.53 4.08 30.59 0.12 -2.41 16 9 C -0.13 -3.40 5.61 29.85 0.17 -3.23 16 10 C 0.51 17.15 7.24 87.66 0.63 17.79 16 11 O -0.58 -22.54 12.24 -3.03 -0.04 -22.57 16 12 N -0.70 -23.16 3.97 -422.81 -1.68 -24.84 16 13 C 0.19 6.66 0.44 3.63 0.00 6.67 16 14 C 0.08 2.24 5.68 71.98 0.41 2.65 16 15 O -0.57 -14.07 12.84 -148.98 -1.91 -15.98 16 16 C -0.12 -3.91 4.84 30.66 0.15 -3.77 16 17 C 0.14 5.74 6.24 86.36 0.54 6.28 16 18 N -0.61 -30.96 2.98 -699.16 -2.09 -33.04 16 19 C -0.26 -14.65 9.57 84.03 0.80 -13.85 16 20 H 0.07 3.66 7.85 -2.91 -0.02 3.63 16 21 C -0.05 -2.88 5.04 84.86 0.43 -2.45 16 22 N -0.94 -57.29 11.10 21.65 0.24 -57.05 16 23 Si 0.97 45.84 29.57 68.60 2.03 47.87 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C 0.20 10.19 4.99 86.36 0.43 10.62 16 28 C -0.14 -5.86 4.71 30.67 0.14 -5.71 16 29 O -0.40 -10.06 10.34 -148.98 -1.54 -11.60 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.03 8.06 -2.39 -0.02 1.01 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.21 7.86 -2.39 -0.02 1.19 16 37 H 0.08 1.91 8.10 -2.38 -0.02 1.90 16 38 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 39 H 0.09 2.51 7.90 -2.39 -0.02 2.49 16 40 H 0.12 2.35 8.14 -2.38 -0.02 2.34 16 41 H 0.40 12.37 7.19 -92.71 -0.67 11.71 16 42 H 0.05 1.67 6.18 -2.39 -0.01 1.65 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.39 5.93 9.12 -74.06 -0.68 5.26 16 45 H 0.09 2.60 7.66 -2.38 -0.02 2.58 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 48 H 0.02 0.77 6.89 -2.39 -0.02 0.75 16 49 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 50 H 0.04 2.59 6.14 -2.39 -0.01 2.58 16 51 H -0.01 -0.44 7.74 -2.39 -0.02 -0.46 16 52 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 53 H 0.06 2.75 6.23 -2.38 -0.01 2.74 16 Total: -1.00 -72.89 403.93 -0.25 -73.14 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.44 Total: 34.05 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.18 Total: 10.04 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.53 Total: -114.93 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -3.49 Total: -50.16 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.89 -0.25 -73.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733915629.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.944 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds