Wall clock time and date at job start Tue Mar 31 2020 23:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.67285 * 2 1 4 4 C 1.54988 * 110.61809 * 237.03164 * 2 1 3 5 5 C 1.54813 * 102.09344 * 204.47420 * 4 2 1 6 6 C 1.54096 * 104.18525 * 20.88064 * 5 4 2 7 7 H 1.08994 * 109.88255 * 242.45340 * 6 5 4 8 8 C 1.53007 * 109.87850 * 121.45448 * 6 5 4 9 9 C 1.52995 * 109.47136 * 175.00260 * 8 6 5 10 10 C 1.50698 * 109.46879 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00448 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99869 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99755 * 185.92635 * 12 10 9 14 14 C 1.52993 * 109.46162 * 297.73619 * 13 12 10 15 15 O 1.42903 * 109.47591 * 304.78532 * 14 13 12 16 16 C 1.53036 * 109.45872 * 57.71231 * 13 12 10 17 17 C 1.53195 * 109.31214 * 58.63607 * 16 13 12 18 18 N 1.46926 * 108.77201 * 54.63781 * 17 16 13 19 19 C 1.36943 * 120.63161 * 126.36759 * 18 17 16 20 20 H 1.08002 * 119.99458 * 332.80016 * 19 18 17 21 21 C 1.38811 * 119.99839 * 152.79489 * 19 18 17 22 22 N 1.31615 * 120.00271 * 333.94770 * 21 19 18 23 23 Si 1.86803 * 119.99587 * 153.67394 * 21 19 18 24 24 H 1.48498 * 109.46967 * 180.27160 * 23 21 19 25 25 H 1.48494 * 109.47236 * 300.27895 * 23 21 19 26 26 H 1.48508 * 109.47065 * 60.27939 * 23 21 19 27 27 C 1.46927 * 118.73810 * 306.63962 * 18 17 16 28 28 C 1.52756 * 109.00950 * 53.31434 * 27 18 17 29 29 O 1.43741 * 107.29593 * 2.03303 * 6 5 4 30 30 H 1.08996 * 109.46744 * 182.96944 * 1 2 3 31 31 H 1.09000 * 109.46839 * 302.96741 * 1 2 3 32 32 H 1.09003 * 109.46865 * 62.96492 * 1 2 3 33 33 H 1.09002 * 110.90970 * 86.27669 * 4 2 1 34 34 H 1.09001 * 110.94197 * 322.68949 * 4 2 1 35 35 H 1.08998 * 110.49028 * 262.20429 * 5 4 2 36 36 H 1.09004 * 110.59854 * 139.61121 * 5 4 2 37 37 H 1.09000 * 109.46822 * 54.99620 * 8 6 5 38 38 H 1.09008 * 109.46743 * 295.00004 * 8 6 5 39 39 H 1.09000 * 109.47788 * 59.99951 * 9 8 6 40 40 H 1.09008 * 109.47095 * 299.99528 * 9 8 6 41 41 H 0.96994 * 120.00054 * 5.93635 * 12 10 9 42 42 H 1.09003 * 109.47093 * 64.78964 * 14 13 12 43 43 H 1.09003 * 109.47255 * 184.78645 * 14 13 12 44 44 H 0.96697 * 114.00405 * 179.97438 * 15 14 13 45 45 H 1.08998 * 109.49633 * 298.68503 * 16 13 12 46 46 H 1.09000 * 109.52144 * 178.60698 * 16 13 12 47 47 H 1.08993 * 109.59002 * 294.84831 * 17 16 13 48 48 H 1.09001 * 109.58394 * 174.42171 * 17 16 13 49 49 H 0.97003 * 119.99976 * 353.68493 * 22 21 19 50 50 H 1.09001 * 109.58415 * 173.15336 * 27 18 17 51 51 H 1.09002 * 109.58229 * 293.56688 * 27 18 17 52 52 H 1.08997 * 109.56437 * 185.55846 * 28 27 18 53 53 H 1.08992 * 109.38943 * 65.51322 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7894 -1.2170 5 6 3.4795 -1.2167 -0.7234 6 6 3.3840 -1.1253 0.8119 7 1 4.0872 -0.3800 1.1833 8 6 3.6936 -2.4882 1.4345 9 6 3.7187 -2.3588 2.9588 10 6 4.0242 -3.7010 3.5719 11 8 4.2037 -4.6663 2.8599 12 7 4.0980 -3.8288 4.9116 13 6 4.5218 -5.1001 5.5039 14 6 3.5239 -6.1964 5.1257 15 8 2.2085 -5.7995 5.5187 16 6 5.9100 -5.4703 4.9770 17 6 6.8992 -4.3542 5.3273 18 7 6.8478 -4.1144 6.7760 19 6 7.9906 -4.1476 7.5297 20 1 8.8297 -4.7489 7.2119 21 6 8.0707 -3.4084 8.7018 22 7 7.3372 -2.3254 8.8483 23 14 9.2138 -3.9550 10.0744 24 1 9.1105 -3.0061 11.2120 25 1 8.8279 -5.3154 10.5278 26 1 10.6120 -3.9779 9.5745 27 6 5.5461 -3.8442 7.4015 28 6 4.5729 -4.9605 7.0271 29 8 2.0385 -0.7352 1.1338 30 1 -0.3633 -1.0263 0.0532 31 1 -0.3633 0.5592 0.8622 32 1 -0.3633 0.4671 -0.9154 33 1 2.1509 -0.1477 -2.0950 34 1 1.4552 -1.6607 -1.4264 35 1 4.2407 -0.5332 -1.0996 36 1 3.6998 -2.2388 -1.0318 37 1 4.6651 -2.8358 1.0832 38 1 2.9245 -3.2038 1.1432 39 1 2.7471 -2.0111 3.3100 40 1 4.4877 -1.6432 3.2500 41 1 3.8704 -3.0793 5.4836 42 1 3.5489 -6.3543 4.0475 43 1 3.7912 -7.1224 5.6348 44 1 1.5228 -6.4483 5.3090 45 1 5.8677 -5.5924 3.8947 46 1 6.2368 -6.4034 5.4359 47 1 6.6249 -3.4428 4.7961 48 1 7.9069 -4.6565 5.0425 49 1 6.8105 -1.9922 8.1051 50 1 5.6615 -3.8099 8.4849 51 1 5.1593 -2.8903 7.0429 52 1 3.5788 -4.7197 7.4039 53 1 4.9114 -5.8984 7.4672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733915633.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:05 Heat of formation + Delta-G solvation = -149.340983 kcal Electronic energy + Delta-G solvation = -31625.869064 eV Core-core repulsion = 27496.430894 eV Total energy + Delta-G solvation = -4129.438170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.63325 -40.56754 -39.13129 -37.58279 -35.81559 -34.86978 -33.72917 -33.17234 -32.23810 -31.80049 -31.11908 -28.29457 -27.39382 -25.60173 -24.32022 -24.05846 -22.67324 -22.19445 -21.85292 -21.40218 -20.27292 -19.37999 -18.30696 -18.07735 -17.46512 -17.12125 -16.64722 -16.36850 -16.30794 -15.92038 -15.78723 -15.40882 -15.31042 -15.22011 -14.82393 -14.73863 -14.45714 -14.20141 -13.93039 -13.76825 -13.63162 -13.38005 -13.28163 -13.03742 -12.92927 -12.72933 -12.56961 -12.54147 -12.41548 -12.15275 -12.04257 -11.93587 -11.88071 -11.81353 -11.70819 -11.50700 -11.47856 -11.27929 -11.08599 -10.58399 -10.45373 -10.38199 -9.94105 -8.93252 -8.24637 -5.38468 1.59059 1.65698 1.72704 1.84962 2.24460 2.65575 2.86594 3.20272 3.22375 3.54158 3.57464 3.65079 3.76564 3.90532 3.93154 3.96564 4.01854 4.15103 4.16900 4.28870 4.30713 4.41854 4.46569 4.47582 4.50850 4.56457 4.59781 4.66078 4.68132 4.73816 4.76457 4.80722 4.92833 4.93492 4.96226 5.00464 5.07002 5.09404 5.12022 5.16299 5.17387 5.21520 5.27249 5.30481 5.34941 5.64017 5.84152 6.07104 6.40177 6.64219 6.85389 7.05469 7.31412 7.77606 8.22113 9.00328 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002640 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.172219 B =10603.973822 C =11387.805429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 H 0.075 0.925 4 C -0.146 4.146 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.072 0.928 8 C -0.089 4.089 9 C -0.132 4.132 10 C 0.517 3.483 11 O -0.573 6.573 12 N -0.704 5.704 13 C 0.194 3.806 14 C 0.076 3.924 15 O -0.577 6.577 16 C -0.130 4.130 17 C 0.158 3.842 18 N -0.612 5.612 19 C -0.358 4.358 20 H 0.047 0.953 21 C -0.071 4.071 22 N -0.937 5.937 23 Si 1.111 2.889 24 H -0.291 1.291 25 H -0.281 1.281 26 H -0.278 1.278 27 C 0.161 3.839 28 C -0.121 4.121 29 O -0.393 6.393 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.402 0.598 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.392 0.608 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.012 0.988 48 H 0.044 0.956 49 H 0.255 0.745 50 H 0.047 0.953 51 H 0.012 0.988 52 H 0.078 0.922 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.704 0.970 -18.544 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.004 3.996 3 H 0.093 0.907 4 C -0.183 4.183 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.090 0.910 8 C -0.127 4.127 9 C -0.172 4.172 10 C 0.305 3.695 11 O -0.454 6.454 12 N -0.354 5.354 13 C 0.107 3.893 14 C -0.003 4.003 15 O -0.384 6.384 16 C -0.170 4.170 17 C 0.032 3.968 18 N -0.337 5.337 19 C -0.487 4.487 20 H 0.065 0.935 21 C -0.268 4.268 22 N -0.579 5.579 23 Si 0.936 3.064 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.204 1.204 27 C 0.035 3.965 28 C -0.160 4.160 29 O -0.314 6.314 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.237 0.763 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.241 0.759 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.030 0.970 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.030 0.970 52 H 0.096 0.904 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.834 1.085 -17.088 21.398 hybrid contribution -0.474 -0.379 -1.394 1.520 sum -13.307 0.705 -18.482 22.785 Atomic orbital electron populations 1.21782 0.92528 1.02638 1.03202 1.23341 0.95857 0.95523 0.84901 0.90677 1.23167 0.95626 1.00885 0.98636 1.23003 0.98623 1.03495 0.93845 1.22805 0.84568 0.95573 0.95316 0.90988 1.21416 1.02459 0.96099 0.92705 1.21625 1.04550 0.93830 0.97204 1.21015 0.75212 0.91420 0.81840 1.90561 1.51846 1.41303 1.61686 1.45966 1.67819 1.14855 1.06758 1.20162 0.92403 0.83863 0.92838 1.22489 0.82792 0.95749 0.99266 1.86416 1.17119 1.49649 1.85198 1.22166 0.94107 0.99349 1.01354 1.20799 0.96778 0.94946 0.84263 1.44301 1.02778 1.84003 1.02606 1.20183 0.95473 1.24856 1.08203 0.93521 1.27088 1.03251 0.93254 1.03218 1.70900 1.32016 1.19522 1.35416 0.82906 0.74299 0.75424 0.73785 1.21731 1.20703 1.20410 1.20676 0.84731 0.94099 0.96973 1.22042 0.99718 1.00539 0.93739 1.88888 1.28277 1.73865 1.40357 0.92582 0.92337 0.89136 0.88372 0.90738 0.89246 0.90257 0.90441 0.91942 0.88132 0.88430 0.76265 0.92491 0.92490 0.75929 0.90387 0.91612 0.96996 0.93764 0.93522 0.93478 0.96967 0.90362 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.66 71.98 0.70 -1.22 16 2 C 0.06 0.96 3.98 31.28 0.12 1.08 16 3 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.15 -1.88 6.59 31.89 0.21 -1.67 16 5 C -0.15 -2.25 6.64 31.58 0.21 -2.04 16 6 C 0.07 1.46 3.41 30.97 0.11 1.57 16 7 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 8 C -0.09 -2.04 3.99 30.60 0.12 -1.92 16 9 C -0.13 -3.32 5.62 29.85 0.17 -3.15 16 10 C 0.52 16.09 7.18 87.66 0.63 16.72 16 11 O -0.57 -20.20 12.29 -3.04 -0.04 -20.24 16 12 N -0.70 -22.54 3.84 -422.79 -1.62 -24.16 16 13 C 0.19 6.55 0.44 3.63 0.00 6.55 16 14 C 0.08 2.23 5.67 71.98 0.41 2.64 16 15 O -0.58 -15.54 12.93 -148.98 -1.93 -17.47 16 16 C -0.13 -4.79 4.63 30.67 0.14 -4.65 16 17 C 0.16 6.85 6.26 86.36 0.54 7.39 16 18 N -0.61 -30.62 2.86 -699.93 -2.00 -32.62 16 19 C -0.36 -20.07 9.48 84.03 0.80 -19.28 16 20 H 0.05 2.65 7.95 -2.91 -0.02 2.63 16 21 C -0.07 -4.03 4.65 84.86 0.39 -3.63 16 22 N -0.94 -56.32 12.40 21.65 0.27 -56.05 16 23 Si 1.11 50.87 29.99 68.60 2.06 52.92 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.16 7.40 4.43 86.22 0.38 7.78 16 28 C -0.12 -4.50 4.84 30.53 0.15 -4.35 16 29 O -0.39 -8.70 10.54 -148.98 -1.57 -10.27 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.20 7.70 -2.39 -0.02 1.18 16 37 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 38 H 0.06 1.60 8.10 -2.38 -0.02 1.58 16 39 H 0.10 2.44 7.91 -2.39 -0.02 2.42 16 40 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.40 12.55 7.35 -92.71 -0.68 11.87 16 42 H 0.06 1.79 6.29 -2.39 -0.02 1.78 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.39 6.84 9.12 -74.06 -0.68 6.17 16 45 H 0.08 2.86 6.25 -2.39 -0.01 2.85 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.01 0.53 7.69 -2.39 -0.02 0.51 16 48 H 0.04 1.97 7.93 -2.39 -0.02 1.95 16 49 H 0.25 15.54 6.84 -92.71 -0.63 14.91 16 50 H 0.05 2.48 6.31 -2.39 -0.02 2.47 16 51 H 0.01 0.57 6.74 -2.39 -0.02 0.55 16 52 H 0.08 2.71 7.78 -2.39 -0.02 2.69 16 53 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -69.83 403.30 -0.07 -69.90 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -0.32 Total: 36.16 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.08 Total: 1.82 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -3.35 Total: -112.83 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -3.53 Total: -47.98 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.06 Total: 52.92 kcal Total: -69.83 -0.07 -69.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733915633.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.442 kcal (2) G-P(sol) polarization free energy of solvation -69.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds