Wall clock time and date at job start Wed Apr 1 2020 00:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.33044 * 2 1 4 4 O 1.44421 * 110.37312 * 237.63213 * 2 1 3 5 5 C 1.44433 * 105.27386 * 200.65616 * 4 2 1 6 6 C 1.54479 * 104.80273 * 40.50973 * 5 4 2 7 7 C 1.54483 * 110.37165 * 122.24856 * 2 1 3 8 8 H 1.09000 * 110.50899 * 261.59445 * 7 2 1 9 9 C 1.50699 * 110.51064 * 24.16721 * 7 2 1 10 10 O 1.21276 * 119.99820 * 88.32958 * 9 7 2 11 11 N 1.34773 * 119.99738 * 268.33287 * 9 7 2 12 12 C 1.46924 * 120.62953 * 175.00556 * 11 9 7 13 13 C 1.53193 * 108.77994 * 126.36319 * 12 11 9 14 14 C 1.53038 * 109.30945 * 54.63471 * 13 12 11 15 15 O 1.42900 * 109.45670 * 178.62846 * 14 13 12 16 16 C 1.42908 * 113.99907 * 210.02480 * 15 14 13 17 17 C 1.53001 * 109.47307 * 179.97438 * 16 15 14 18 18 C 1.52991 * 109.47468 * 180.02562 * 17 16 15 19 19 N 1.46492 * 109.47613 * 180.02562 * 18 17 16 20 20 C 1.36936 * 120.00673 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99494 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00407 * 179.97438 * 20 19 18 23 23 N 1.31614 * 119.99788 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99827 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47033 * 60.00684 * 24 22 20 26 26 H 1.48501 * 109.46697 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47326 * 300.00224 * 24 22 20 28 28 C 1.53036 * 109.52887 * 298.64020 * 14 13 12 29 29 C 1.46930 * 120.63411 * 354.97089 * 11 9 7 30 30 H 1.09002 * 109.47178 * 293.45985 * 1 2 3 31 31 H 1.09000 * 109.47332 * 53.45892 * 1 2 3 32 32 H 1.09001 * 109.46908 * 173.45798 * 1 2 3 33 33 H 1.08996 * 110.37009 * 159.34157 * 5 4 2 34 34 H 1.09001 * 110.37217 * 281.68070 * 5 4 2 35 35 H 1.08999 * 110.50789 * 217.37617 * 6 5 4 36 36 H 1.08997 * 110.50774 * 94.66911 * 6 5 4 37 37 H 1.09002 * 109.58504 * 6.57410 * 12 11 9 38 38 H 1.09002 * 109.58541 * 246.15308 * 12 11 9 39 39 H 1.08996 * 109.49467 * 294.68461 * 13 12 11 40 40 H 1.09005 * 109.52245 * 174.59969 * 13 12 11 41 41 H 1.08998 * 109.46211 * 58.65583 * 14 13 12 42 42 H 1.08999 * 109.47222 * 300.00195 * 16 15 14 43 43 H 1.08999 * 109.46625 * 60.00250 * 16 15 14 44 44 H 1.08995 * 109.46794 * 300.00542 * 17 16 15 45 45 H 1.09004 * 109.46599 * 59.99753 * 17 16 15 46 46 H 1.08999 * 109.46976 * 300.00251 * 18 17 16 47 47 H 1.09003 * 109.47248 * 59.99718 * 18 17 16 48 48 H 0.97004 * 119.99668 * 359.97438 * 19 18 17 49 49 H 0.96999 * 119.99756 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.49933 * 181.31285 * 28 14 13 51 51 H 1.09003 * 109.50065 * 301.41114 * 28 14 13 52 52 H 1.08994 * 109.58340 * 353.42702 * 29 11 9 53 53 H 1.09006 * 109.58165 * 113.70427 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0327 -0.7248 -1.1435 5 6 3.3874 -1.0879 -0.7983 6 6 3.3178 -1.5049 0.6875 7 6 2.0677 -0.7728 1.2248 8 1 2.3406 -0.0819 2.0226 9 6 1.0443 -1.7648 1.7142 10 8 1.0163 -2.8854 1.2513 11 7 0.1602 -1.4066 2.6663 12 6 -0.9115 -2.3243 3.0760 13 6 -0.8560 -2.4999 4.5968 14 6 -0.9149 -1.1255 5.2674 15 8 -0.8954 -1.2874 6.6870 16 6 -1.5916 -0.2620 7.3985 17 6 -1.5063 -0.5360 8.9013 18 6 -2.2522 0.5614 9.6630 19 7 -2.1700 0.2994 11.1020 20 6 -2.7687 1.1539 11.9889 21 1 -3.3012 2.0212 11.6275 22 6 -2.6913 0.9053 13.3524 23 7 -2.0419 -0.1514 13.7928 24 14 -3.5075 2.0714 14.5622 25 1 -4.9663 2.1257 14.2898 26 1 -3.2798 1.5866 15.9472 27 1 -2.9248 3.4289 14.4113 28 6 0.2927 -0.2920 4.8327 29 6 0.2502 -0.0913 3.3149 30 1 -0.3634 0.4091 0.9427 31 1 -0.3634 0.6119 -0.8256 32 1 -0.3633 -1.0210 -0.1171 33 1 3.7242 -1.9237 -1.4116 34 1 4.0525 -0.2332 -0.9218 35 1 4.2109 -1.1759 1.2187 36 1 3.1956 -2.5844 0.7759 37 1 -0.7705 -3.2904 2.5912 38 1 -1.8778 -1.9079 2.7912 39 1 0.0731 -2.9993 4.8716 40 1 -1.7035 -3.1016 4.9252 41 1 -1.8325 -0.6166 4.9724 42 1 -1.1384 0.7047 7.1787 43 1 -2.6371 -0.2516 7.0902 44 1 -1.9598 -1.5025 9.1207 45 1 -0.4609 -0.5467 9.2099 46 1 -1.7990 1.5282 9.4436 47 1 -3.2975 0.5718 9.3543 48 1 -1.6920 -0.4798 11.4265 49 1 -1.9881 -0.3253 14.7455 50 1 0.2627 0.6781 5.3286 51 1 1.2110 -0.8122 5.1053 52 1 1.1577 0.4160 2.9877 53 1 -0.6201 0.5082 3.0476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734090608.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:36 Heat of formation + Delta-G solvation = -143.725470 kcal Electronic energy + Delta-G solvation = -30032.267749 eV Core-core repulsion = 25903.073086 eV Total energy + Delta-G solvation = -4129.194663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.97170 -40.19250 -39.19069 -37.69748 -36.80507 -34.43529 -33.90360 -32.75912 -32.34978 -32.03013 -31.21314 -27.70752 -26.96453 -25.69679 -24.59820 -24.18623 -23.12615 -22.99644 -22.44298 -21.45790 -19.66429 -19.13158 -18.73704 -17.72259 -17.42474 -17.21530 -16.85144 -16.59324 -16.51525 -16.11278 -16.01848 -15.69609 -15.42058 -15.24348 -15.13708 -14.78345 -14.58418 -14.15947 -13.99452 -13.79587 -13.48956 -13.34493 -13.31408 -13.15690 -12.89555 -12.82902 -12.78051 -12.46070 -12.44946 -12.30346 -12.18871 -12.09937 -12.05673 -11.96260 -11.91920 -11.77077 -11.70956 -11.47906 -10.95685 -10.92829 -10.62409 -10.37165 -9.76445 -9.02588 -7.95693 -5.26014 1.48045 1.50596 1.51864 1.58103 1.89387 2.51033 2.66337 2.89780 3.30413 3.37901 3.51017 3.64679 3.73666 3.81436 3.96199 3.99966 4.03298 4.09825 4.12987 4.18526 4.27301 4.28201 4.30306 4.34036 4.37633 4.42891 4.47467 4.59021 4.61505 4.68327 4.72473 4.76831 4.77983 4.81644 4.82153 4.85828 4.89257 4.93529 4.98035 5.10078 5.12771 5.17522 5.24084 5.33443 5.34029 5.48628 5.48900 5.86517 6.25510 6.32354 6.35274 7.10532 7.31789 8.07434 8.30150 9.27900 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.001553 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.232554 B =18024.863381 C =18205.981935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 H 0.112 0.888 4 O -0.398 6.398 5 C 0.045 3.955 6 C -0.145 4.145 7 C -0.147 4.147 8 H 0.139 0.861 9 C 0.527 3.473 10 O -0.582 6.582 11 N -0.610 5.610 12 C 0.118 3.882 13 C -0.125 4.125 14 C 0.085 3.915 15 O -0.403 6.403 16 C 0.078 3.922 17 C -0.114 4.114 18 C 0.156 3.844 19 N -0.751 5.751 20 C -0.251 4.251 21 H 0.080 0.920 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.979 3.021 25 H -0.276 1.276 26 H -0.296 1.296 27 H -0.275 1.275 28 C -0.154 4.154 29 C 0.105 3.895 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.026 0.974 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.093 0.907 51 H 0.061 0.939 52 H 0.114 0.886 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.859 3.254 -32.809 34.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 H 0.129 0.871 4 O -0.318 6.318 5 C -0.032 4.032 6 C -0.183 4.183 7 C -0.168 4.168 8 H 0.157 0.843 9 C 0.316 3.684 10 O -0.462 6.462 11 N -0.342 5.342 12 C -0.005 4.005 13 C -0.164 4.164 14 C 0.028 3.972 15 O -0.323 6.323 16 C 0.001 3.999 17 C -0.153 4.153 18 C 0.029 3.971 19 N -0.393 5.393 20 C -0.383 4.383 21 H 0.098 0.902 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.807 3.193 25 H -0.202 1.202 26 H -0.222 1.222 27 H -0.201 1.201 28 C -0.193 4.193 29 C -0.017 4.017 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.044 0.956 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.112 0.888 51 H 0.080 0.920 52 H 0.132 0.868 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.706 2.621 -33.121 34.346 hybrid contribution -0.189 -0.229 1.358 1.390 sum 8.517 2.393 -31.763 32.972 Atomic orbital electron populations 1.22004 0.93152 1.01863 1.04241 1.23090 0.95636 0.95964 0.82531 0.87061 1.89157 1.28656 1.75033 1.38978 1.23544 0.83925 1.00961 0.94721 1.22988 0.97260 1.01304 0.96775 1.23002 0.94917 0.97777 1.01063 0.84321 1.20690 0.81552 0.87919 0.78208 1.90673 1.73035 1.23500 1.58979 1.48256 1.29843 1.18008 1.38123 1.21539 0.90668 0.94993 0.93267 1.21914 1.03147 0.96945 0.94383 1.22201 0.98683 0.96172 0.80148 1.87921 1.76103 1.49603 1.18711 1.22349 0.96262 0.90897 0.90348 1.21486 1.00689 0.98926 0.94151 1.20668 0.97262 0.96072 0.83067 1.42606 1.65135 1.30039 1.01551 1.19660 1.26072 1.04356 0.88200 0.90224 1.25664 1.02341 1.00101 0.98910 1.69828 1.48567 1.30254 1.13521 0.85135 0.78377 0.78242 0.77526 1.20197 1.22189 1.20114 1.22409 0.98928 1.01729 0.96210 1.22088 1.05485 0.83225 0.90891 0.88729 0.90746 0.94474 0.89169 0.89496 0.87346 0.91769 0.90415 0.89122 0.92673 0.89851 0.90164 0.91546 0.92020 0.92587 0.92359 0.95348 0.95597 0.79598 0.93959 0.88836 0.92006 0.86819 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.50 71.98 0.61 -1.17 16 2 C 0.09 0.96 3.83 31.10 0.12 1.08 16 3 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 4 O -0.40 -7.10 11.34 -148.98 -1.69 -8.79 16 5 C 0.04 0.54 7.63 72.48 0.55 1.09 16 6 C -0.15 -1.80 6.60 31.61 0.21 -1.59 16 7 C -0.15 -1.67 2.80 -10.52 -0.03 -1.70 16 8 H 0.14 0.65 5.89 -2.39 -0.01 0.63 16 9 C 0.53 9.58 4.82 87.66 0.42 10.00 16 10 O -0.58 -16.20 15.09 -3.02 -0.05 -16.24 16 11 N -0.61 -8.38 2.57 -818.96 -2.10 -10.48 16 12 C 0.12 1.79 6.44 86.36 0.56 2.35 16 13 C -0.13 -2.14 5.73 30.67 0.18 -1.97 16 14 C 0.09 1.40 2.57 30.62 0.08 1.48 16 15 O -0.40 -9.82 9.99 -148.98 -1.49 -11.31 16 16 C 0.08 1.85 5.75 71.98 0.41 2.27 16 17 C -0.11 -3.73 5.70 30.59 0.17 -3.55 16 18 C 0.16 6.09 6.26 86.38 0.54 6.63 16 19 N -0.75 -38.95 5.60 -343.48 -1.92 -40.87 16 20 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 21 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 22 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 23 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 24 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 28 C -0.15 -1.87 5.69 30.66 0.17 -1.70 16 29 C 0.10 0.77 5.06 86.35 0.44 1.20 16 30 H 0.09 0.64 5.84 -2.39 -0.01 0.63 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.66 7.24 -2.39 -0.02 0.65 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.20 6.84 -2.39 -0.02 1.19 16 37 H 0.08 1.53 7.00 -2.39 -0.02 1.51 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 42 H 0.07 1.33 7.84 -2.39 -0.02 1.31 16 43 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 46 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.37 20.74 7.67 -92.71 -0.71 20.03 16 49 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.09 0.96 7.84 -2.39 -0.02 0.94 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.11 0.31 5.31 -2.39 -0.01 0.30 16 53 H 0.10 0.34 7.60 -2.38 -0.02 0.32 16 Total: -1.00 -77.70 408.32 0.98 -76.72 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.18 Total: 25.90 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.74 Total: -2.93 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -3.74 Total: -111.27 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -3.22 Total: -36.34 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.70 0.98 -76.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734090608.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.008 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds