Wall clock time and date at job start Wed Apr 1 2020 00:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.88579 * 2 1 4 4 C 1.55134 * 110.90348 * 124.09639 * 2 1 3 5 5 N 1.47423 * 104.72044 * 155.27547 * 4 2 1 6 6 C 1.34779 * 125.64761 * 155.81417 * 5 4 2 7 7 O 1.21273 * 120.00093 * 359.71833 * 6 5 4 8 8 C 1.50706 * 119.99767 * 179.71310 * 6 5 4 9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 6 11 11 O 1.42895 * 109.47503 * 180.02562 * 10 9 8 12 12 C 1.42902 * 114.00370 * 179.97438 * 11 10 9 13 13 C 1.53173 * 109.54587 * 269.55425 * 12 11 10 14 14 C 1.53083 * 109.16766 * 183.15079 * 13 12 11 15 15 O 1.42906 * 109.41638 * 57.60772 * 14 13 12 16 16 C 1.42911 * 114.09751 * 298.84884 * 15 14 13 17 17 C 1.53090 * 109.41780 * 61.15100 * 16 15 14 18 18 C 1.47029 * 108.70620 * 335.55120 * 5 4 2 19 19 C 1.54330 * 107.26628 * 1.28516 * 18 5 4 20 20 H 1.08997 * 110.71718 * 140.55439 * 19 18 5 21 21 N 1.46491 * 110.72002 * 263.65312 * 19 18 5 22 22 C 1.36942 * 120.00182 * 273.54543 * 21 19 18 23 23 H 1.08004 * 119.99868 * 0.02562 * 22 21 19 24 24 C 1.38807 * 120.00241 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99966 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47090 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47264 * 120.00140 * 26 24 22 29 29 H 1.48497 * 109.47058 * 239.99759 * 26 24 22 30 30 H 1.09009 * 109.47233 * 183.88181 * 1 2 3 31 31 H 1.08993 * 109.47235 * 303.88025 * 1 2 3 32 32 H 1.09003 * 109.47087 * 63.88255 * 1 2 3 33 33 H 1.09001 * 110.49858 * 36.43146 * 4 2 1 34 34 H 1.08997 * 110.34228 * 274.03459 * 4 2 1 35 35 H 1.09001 * 109.46797 * 60.00350 * 8 6 5 36 36 H 1.08992 * 109.47518 * 300.00347 * 8 6 5 37 37 H 1.09002 * 109.47398 * 300.00410 * 9 8 6 38 38 H 1.09001 * 109.47194 * 60.00591 * 9 8 6 39 39 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 40 40 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 41 41 H 1.09007 * 109.53866 * 29.82525 * 12 11 10 42 42 H 1.08998 * 109.52158 * 303.06020 * 13 12 11 43 43 H 1.09005 * 109.52287 * 63.24167 * 13 12 11 44 44 H 1.09007 * 109.48419 * 297.63183 * 14 13 12 45 45 H 1.08997 * 109.49496 * 177.59920 * 14 13 12 46 46 H 1.08999 * 109.47590 * 301.16797 * 16 15 14 47 47 H 1.09001 * 109.49090 * 181.14653 * 16 15 14 48 48 H 1.08995 * 109.52122 * 182.48869 * 17 16 15 49 49 H 1.09000 * 109.51775 * 62.30006 * 17 16 15 50 50 H 1.08999 * 109.88049 * 120.70312 * 18 5 4 51 51 H 1.08994 * 109.87901 * 241.72003 * 18 5 4 52 52 H 0.97004 * 120.00246 * 93.54917 * 21 19 18 53 53 H 0.97001 * 120.00447 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0835 -0.8124 1.2001 5 7 3.4271 -1.2434 0.7729 6 6 4.4476 -1.5622 1.5935 7 8 4.3008 -1.5011 2.7958 8 6 5.7711 -1.9948 1.0170 9 6 6.7486 -2.2967 2.1547 10 6 8.0925 -2.7353 1.5695 11 8 9.0053 -3.0179 2.6319 12 6 10.2978 -3.4390 2.1913 13 6 10.3221 -4.9648 2.0588 14 6 11.7314 -5.4126 1.6628 15 8 12.6676 -4.9545 2.6405 16 6 12.7228 -3.5328 2.7744 17 6 11.3533 -3.0095 3.2150 18 6 3.4675 -1.2739 -0.6965 19 6 2.0861 -0.8076 -1.2025 20 1 2.1921 -0.1692 -2.0796 21 7 1.2283 -1.9570 -1.5009 22 6 1.2847 -2.5520 -2.7330 23 1 1.9620 -2.1741 -3.4846 24 6 0.4715 -3.6407 -3.0159 25 7 -0.3535 -4.1016 -2.0997 26 14 0.5491 -4.4528 -4.6963 27 1 1.5507 -3.7517 -5.5391 28 1 0.9432 -5.8760 -4.5407 29 1 -0.7846 -4.3766 -5.3449 30 1 -0.3634 -1.0254 0.0696 31 1 -0.3633 0.5728 0.8531 32 1 -0.3633 0.4524 -0.9228 33 1 1.4523 -1.6787 1.3982 34 1 2.1515 -0.1810 2.0860 35 1 6.1740 -1.1967 0.3935 36 1 5.6290 -2.8909 0.4132 37 1 6.8909 -1.4008 2.7590 38 1 6.3455 -3.0951 2.7778 39 1 7.9506 -3.6311 0.9649 40 1 8.4955 -1.9368 0.9465 41 1 10.5200 -2.9842 1.2259 42 1 10.0505 -5.4176 3.0123 43 1 9.6123 -5.2752 1.2919 44 1 11.9867 -4.9919 0.6901 45 1 11.7656 -6.5007 1.6086 46 1 12.9910 -3.0877 1.8163 47 1 13.4711 -3.2666 3.5210 48 1 11.3811 -1.9216 3.2750 49 1 11.1026 -3.4229 4.1919 50 1 4.2426 -0.5994 -1.0601 51 1 3.6677 -2.2885 -1.0407 52 1 0.6202 -2.2966 -0.8257 53 1 -0.9220 -4.8622 -2.2975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755118348.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:14 Heat of formation + Delta-G solvation = -149.914998 kcal Electronic energy + Delta-G solvation = -29771.968309 eV Core-core repulsion = 25642.505249 eV Total energy + Delta-G solvation = -4129.463061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.18639 -40.59058 -39.17061 -38.51109 -35.68504 -34.99939 -33.90187 -33.02252 -32.20242 -32.11610 -29.31983 -28.76765 -26.72712 -25.75680 -25.13315 -24.59295 -23.60218 -22.61697 -21.31443 -20.70668 -20.08358 -19.38019 -18.14186 -17.88636 -17.45714 -17.16877 -17.02536 -16.77325 -16.40757 -16.19480 -15.91488 -15.74314 -15.43275 -15.15580 -14.95620 -14.65121 -14.48441 -14.23291 -14.14028 -13.69190 -13.44202 -13.34058 -13.24529 -13.13737 -12.99575 -12.85555 -12.80112 -12.53149 -12.41096 -12.32189 -12.24988 -12.05562 -11.96717 -11.89415 -11.70635 -11.45101 -11.36752 -11.34334 -11.04876 -10.85827 -10.67951 -10.46266 -9.62353 -8.99380 -7.91004 -5.19135 1.50175 1.51216 1.60254 1.61062 2.00063 2.58422 2.60112 2.94738 3.41336 3.43835 3.73018 3.73841 3.79785 3.90027 3.92947 3.95626 3.98890 4.02812 4.10110 4.11840 4.24837 4.29487 4.42204 4.43432 4.44771 4.50784 4.56514 4.58653 4.65626 4.66224 4.71169 4.74285 4.75089 4.82058 4.88702 4.99814 5.01491 5.03386 5.06508 5.11435 5.15582 5.21975 5.23748 5.31200 5.36362 5.54846 5.60979 6.21176 6.26882 6.30482 6.59161 7.14237 7.37895 8.13000 8.35076 9.32558 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.002035 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.950266 B =13759.092964 C =15577.733101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.111 0.889 4 C 0.113 3.887 5 N -0.611 5.611 6 C 0.518 3.482 7 O -0.594 6.594 8 C -0.122 4.122 9 C -0.095 4.095 10 C 0.066 3.934 11 O -0.402 6.402 12 C 0.083 3.917 13 C -0.178 4.178 14 C 0.063 3.937 15 O -0.405 6.405 16 C 0.063 3.937 17 C -0.153 4.153 18 C 0.081 3.919 19 C 0.160 3.840 20 H 0.084 0.916 21 N -0.724 5.724 22 C -0.230 4.230 23 H 0.086 0.914 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.260 1.260 28 H -0.301 1.301 29 H -0.300 1.300 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.112 0.888 48 H 0.089 0.911 49 H 0.063 0.937 50 H 0.095 0.905 51 H 0.058 0.942 52 H 0.374 0.626 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.663 6.844 4.401 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.129 0.871 4 C -0.010 4.010 5 N -0.343 5.343 6 C 0.308 3.692 7 O -0.476 6.476 8 C -0.162 4.162 9 C -0.133 4.133 10 C -0.010 4.010 11 O -0.322 6.322 12 C 0.026 3.974 13 C -0.217 4.217 14 C -0.014 4.014 15 O -0.324 6.324 16 C -0.014 4.014 17 C -0.190 4.190 18 C -0.044 4.044 19 C 0.050 3.950 20 H 0.102 0.898 21 N -0.364 5.364 22 C -0.362 4.362 23 H 0.104 0.896 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.184 1.184 28 H -0.229 1.229 29 H -0.228 1.228 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.087 0.913 47 H 0.130 0.870 48 H 0.108 0.892 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.076 0.924 52 H 0.207 0.793 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 23.768 6.723 5.163 25.234 hybrid contribution -1.123 -1.056 -0.673 1.682 sum 22.645 5.666 4.489 23.771 Atomic orbital electron populations 1.21478 0.93731 1.01230 1.01956 1.22615 0.96589 0.99316 0.93253 0.87067 1.22256 0.83004 0.97571 0.98189 1.48602 1.11835 1.65628 1.08203 1.20945 0.86219 0.76264 0.85732 1.90655 1.84351 1.56021 1.16532 1.21498 0.90517 1.04739 0.99417 1.21098 0.93006 1.01977 0.97234 1.22556 0.88827 1.00226 0.89419 1.87917 1.22967 1.87587 1.33769 1.22262 0.83072 0.93786 0.98316 1.22722 0.99138 0.96743 1.03056 1.22662 0.86417 1.00894 0.91401 1.87922 1.61018 1.22781 1.60684 1.22722 0.95890 0.80322 1.02422 1.22305 0.94706 1.02691 0.99335 1.23110 1.01278 1.01957 0.78082 1.21504 0.88553 0.88723 0.96230 0.89823 1.42645 1.46195 1.34062 1.13532 1.19693 1.16795 1.08282 0.91409 0.89643 1.25503 0.99830 1.00507 1.01062 1.69827 1.29022 1.28233 1.35086 0.85156 0.77028 0.77756 0.80313 1.18409 1.22923 1.22764 0.94524 0.91222 0.92278 0.94049 0.90821 0.85759 0.87741 0.91681 0.92995 0.92267 0.90963 0.90315 0.91959 0.89990 0.91395 0.87709 0.91326 0.87035 0.89246 0.91810 0.88687 0.92376 0.79278 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.85 71.98 0.64 -3.14 16 2 C -0.10 -2.79 3.53 -9.32 -0.03 -2.83 16 3 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 4 C 0.11 3.64 6.36 86.93 0.55 4.19 16 5 N -0.61 -19.22 3.32 -811.33 -2.70 -21.92 16 6 C 0.52 16.53 7.85 87.66 0.69 17.22 16 7 O -0.59 -23.52 16.24 -3.01 -0.05 -23.56 16 8 C -0.12 -2.72 4.89 29.85 0.15 -2.58 16 9 C -0.09 -2.21 4.87 30.59 0.15 -2.06 16 10 C 0.07 1.19 5.75 71.98 0.41 1.60 16 11 O -0.40 -8.64 10.00 -148.98 -1.49 -10.13 16 12 C 0.08 1.32 2.70 30.71 0.08 1.40 16 13 C -0.18 -2.75 5.76 30.68 0.18 -2.58 16 14 C 0.06 0.81 6.84 72.01 0.49 1.30 16 15 O -0.40 -6.69 10.77 -148.98 -1.60 -8.30 16 16 C 0.06 0.73 6.84 72.01 0.49 1.22 16 17 C -0.15 -2.18 5.79 30.68 0.18 -2.00 16 18 C 0.08 2.37 6.22 86.73 0.54 2.91 16 19 C 0.16 5.30 3.36 46.18 0.16 5.46 16 20 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16 21 N -0.72 -32.51 4.62 -317.33 -1.47 -33.98 16 22 C -0.23 -11.51 9.98 84.03 0.84 -10.67 16 23 H 0.09 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.17 5.50 84.86 0.47 -3.70 16 25 N -0.97 -57.44 13.06 21.65 0.28 -57.16 16 26 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 30 H 0.04 1.34 6.39 -2.38 -0.02 1.33 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 34 H 0.07 2.29 8.03 -2.39 -0.02 2.28 16 35 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.06 0.96 7.99 -2.39 -0.02 0.94 16 40 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 41 H 0.08 0.96 7.79 -2.38 -0.02 0.94 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.15 7.99 -2.38 -0.02 1.13 16 44 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.06 1.96 8.05 -2.39 -0.02 1.94 16 52 H 0.37 18.79 6.11 -92.71 -0.57 18.23 16 53 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -69.94 418.71 1.28 -68.65 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.30 Total: 34.73 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.98 Total: 5.75 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -3.88 Total: -113.06 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -3.14 Total: -41.99 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.94 1.28 -68.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755118348.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.261 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds