Wall clock time and date at job start Wed Apr 1 2020 00:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64092 * 2 1 4 4 C 1.54324 * 110.72001 * 123.14135 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.65611 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21289 * 119.99816 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00483 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.47301 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46925 * 179.97438 * 9 8 6 11 11 O 1.42900 * 109.47302 * 180.02562 * 10 9 8 12 12 C 1.42899 * 114.00726 * 180.02562 * 11 10 9 13 13 C 1.53174 * 109.53974 * 269.55803 * 12 11 10 14 14 C 1.53099 * 109.16005 * 183.14551 * 13 12 11 15 15 O 1.42908 * 109.41258 * 57.61205 * 14 13 12 16 16 C 1.42901 * 114.09480 * 298.83721 * 15 14 13 17 17 C 1.53093 * 109.41471 * 61.16183 * 16 15 14 18 18 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 19 19 C 1.54909 * 104.83995 * 335.74644 * 18 5 4 20 20 H 1.08994 * 111.00889 * 279.01887 * 19 18 5 21 21 N 1.46498 * 111.00162 * 155.16578 * 19 18 5 22 22 C 1.36942 * 120.00022 * 92.80865 * 21 19 18 23 23 H 1.08006 * 119.99757 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00359 * 179.97438 * 22 21 19 25 25 N 1.31616 * 120.00164 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99855 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46914 * 90.00489 * 26 24 22 28 28 H 1.48503 * 109.47033 * 209.99915 * 26 24 22 29 29 H 1.48490 * 109.47321 * 330.00381 * 26 24 22 30 30 H 1.08998 * 109.46692 * 298.31216 * 1 2 3 31 31 H 1.08997 * 109.47070 * 58.30879 * 1 2 3 32 32 H 1.09002 * 109.47183 * 178.31263 * 1 2 3 33 33 H 1.09002 * 109.88322 * 260.15141 * 4 2 1 34 34 H 1.09000 * 109.88025 * 21.16306 * 4 2 1 35 35 H 1.09004 * 109.46826 * 300.00015 * 8 6 5 36 36 H 1.08999 * 109.47133 * 59.99882 * 8 6 5 37 37 H 1.08994 * 109.47362 * 299.99868 * 9 8 6 38 38 H 1.09003 * 109.46782 * 60.00422 * 9 8 6 39 39 H 1.08994 * 109.47545 * 299.99852 * 10 9 8 40 40 H 1.08999 * 109.47200 * 60.00229 * 10 9 8 41 41 H 1.09006 * 109.53785 * 29.81938 * 12 11 10 42 42 H 1.08993 * 109.52368 * 303.04763 * 13 12 11 43 43 H 1.08997 * 109.52561 * 63.24646 * 13 12 11 44 44 H 1.08992 * 109.48567 * 297.62845 * 14 13 12 45 45 H 1.08997 * 109.48124 * 177.58777 * 14 13 12 46 46 H 1.09003 * 109.48315 * 301.17649 * 16 15 14 47 47 H 1.08997 * 109.48973 * 181.14348 * 16 15 14 48 48 H 1.09003 * 109.52615 * 182.48333 * 17 16 15 49 49 H 1.09004 * 109.52560 * 62.29424 * 17 16 15 50 50 H 1.09003 * 110.29227 * 216.94505 * 18 5 4 51 51 H 1.08996 * 110.53057 * 94.67717 * 18 5 4 52 52 H 0.96998 * 120.00750 * 272.81024 * 21 19 18 53 53 H 0.96996 * 120.00537 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2464 -1.5488 0.7453 6 6 3.9920 -2.3804 1.4996 7 8 3.7156 -2.5511 2.6682 8 6 5.1692 -3.0982 0.8912 9 6 5.8388 -3.9716 1.9540 10 6 7.0335 -4.7008 1.3361 11 8 7.6587 -5.5170 2.3285 12 6 8.7926 -6.2449 1.8526 13 6 8.3410 -7.6113 1.3280 14 6 9.5702 -8.4140 0.8935 15 8 10.4670 -8.5449 1.9984 16 6 10.9592 -7.3010 2.5008 17 6 9.7860 -6.4536 2.9998 18 6 3.4674 -1.2455 -0.6837 19 6 2.0828 -0.7949 -1.2124 20 1 1.4515 -1.6546 -1.4366 21 7 2.2251 0.0698 -2.3864 22 6 2.1937 -0.4719 -3.6437 23 1 2.0636 -1.5367 -3.7698 24 6 2.3280 0.3474 -4.7561 25 7 2.4860 1.6450 -4.6025 26 14 2.2858 -0.3918 -6.4711 27 1 0.8858 -0.4147 -6.9659 28 1 3.1203 0.4294 -7.3847 29 1 2.8177 -1.7774 -6.4261 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 2.3712 -0.0991 1.9991 34 1 1.3131 -1.4734 1.5798 35 1 4.8265 -3.7253 0.0681 36 1 5.8864 -2.3676 0.5172 37 1 6.1815 -3.3443 2.7768 38 1 5.1217 -4.7022 2.3283 39 1 6.6905 -5.3282 0.5135 40 1 7.7507 -3.9705 0.9613 41 1 9.2743 -5.6858 1.0504 42 1 7.8153 -8.1488 2.1171 43 1 7.6765 -7.4726 0.4752 44 1 10.0728 -7.8957 0.0769 45 1 9.2586 -9.4035 0.5591 46 1 11.4800 -6.7681 1.7051 47 1 11.6483 -7.4884 3.3242 48 1 10.1547 -5.4868 3.3428 49 1 9.2893 -6.9677 3.8227 50 1 3.8032 -2.1378 -1.2120 51 1 4.1960 -0.4426 -0.7958 52 1 2.3416 1.0261 -2.2732 53 1 2.5802 2.2176 -5.3797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755118350.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:26 Heat of formation + Delta-G solvation = -153.066535 kcal Electronic energy + Delta-G solvation = -29521.322953 eV Core-core repulsion = 25391.723231 eV Total energy + Delta-G solvation = -4129.599722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.17684 -40.58843 -39.10486 -38.50406 -35.85252 -35.00419 -33.91802 -33.03251 -32.45744 -32.11431 -29.15941 -28.77521 -26.74566 -25.80842 -25.12176 -24.58794 -23.23853 -22.57996 -21.37730 -21.24562 -20.16404 -19.11907 -18.20674 -17.91132 -17.53687 -17.16535 -17.05031 -16.80768 -16.43641 -16.25168 -15.85727 -15.60248 -15.31508 -15.14371 -14.90739 -14.57686 -14.42441 -14.37436 -14.17484 -14.01855 -13.60418 -13.27908 -13.21905 -13.14740 -12.99665 -12.86064 -12.81038 -12.52751 -12.41021 -12.26148 -12.21984 -12.10334 -11.99135 -11.90150 -11.70985 -11.69232 -11.40617 -11.35131 -11.02268 -10.86774 -10.67987 -10.46193 -9.68609 -9.02218 -7.92559 -5.22069 1.51830 1.52649 1.58840 1.60467 1.92399 2.55388 2.61059 2.94619 3.37546 3.40281 3.73022 3.73882 3.79604 3.80805 3.94214 3.96025 3.98727 4.02801 4.10526 4.18607 4.24947 4.29046 4.38084 4.42316 4.45218 4.47991 4.50225 4.56404 4.58750 4.62730 4.68752 4.72864 4.75124 4.82098 4.88514 4.91465 5.03360 5.06094 5.09703 5.11867 5.13813 5.15402 5.21443 5.27141 5.35840 5.45705 5.57478 6.20987 6.26261 6.28023 6.51973 7.11163 7.36166 8.07422 8.31681 9.30101 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.001995 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.510131 B =14032.504955 C =16099.214316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 H 0.078 0.922 4 C 0.117 3.883 5 N -0.615 5.615 6 C 0.522 3.478 7 O -0.588 6.588 8 C -0.126 4.126 9 C -0.094 4.094 10 C 0.064 3.936 11 O -0.401 6.401 12 C 0.082 3.918 13 C -0.177 4.177 14 C 0.062 3.938 15 O -0.404 6.404 16 C 0.063 3.937 17 C -0.153 4.153 18 C 0.085 3.915 19 C 0.170 3.830 20 H 0.066 0.934 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.080 0.920 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.967 3.033 27 H -0.292 1.292 28 H -0.300 1.300 29 H -0.267 1.267 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.112 0.888 48 H 0.087 0.913 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.064 0.936 52 H 0.376 0.624 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.890 -15.334 11.861 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.125 4.125 3 H 0.096 0.904 4 C -0.006 4.006 5 N -0.348 5.348 6 C 0.313 3.687 7 O -0.469 6.469 8 C -0.165 4.165 9 C -0.132 4.132 10 C -0.012 4.012 11 O -0.321 6.321 12 C 0.025 3.975 13 C -0.215 4.215 14 C -0.015 4.015 15 O -0.323 6.323 16 C -0.014 4.014 17 C -0.191 4.191 18 C -0.040 4.040 19 C 0.059 3.941 20 H 0.084 0.916 21 N -0.358 5.358 22 C -0.370 4.370 23 H 0.098 0.902 24 C -0.262 4.262 25 N -0.616 5.616 26 Si 0.797 3.203 27 H -0.219 1.219 28 H -0.227 1.227 29 H -0.191 1.191 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.085 0.915 47 H 0.130 0.870 48 H 0.105 0.895 49 H 0.084 0.916 50 H 0.101 0.899 51 H 0.082 0.918 52 H 0.209 0.791 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.759 -15.785 12.619 23.900 hybrid contribution -0.262 0.774 -1.259 1.501 sum 12.497 -15.011 11.361 22.596 Atomic orbital electron populations 1.21608 0.92852 1.02153 1.01997 1.22426 0.97379 0.99166 0.93531 0.90408 1.21956 0.87589 0.94465 0.96566 1.48668 1.29886 1.43997 1.12230 1.20860 0.84011 0.78414 0.85431 1.90669 1.72373 1.65689 1.18145 1.21524 0.95094 1.00088 0.99843 1.21090 0.96284 0.98158 0.97660 1.22566 0.94361 0.93399 0.90862 1.87911 1.45176 1.61198 1.37817 1.22259 0.86593 0.91803 0.96859 1.22710 0.99638 0.96730 1.02388 1.22679 0.88728 1.01722 0.88355 1.87920 1.63512 1.30606 1.50305 1.22711 0.94596 0.84305 0.99751 1.22303 0.96513 1.01914 0.98321 1.23269 1.00881 1.01082 0.78816 1.21519 0.92987 0.93413 0.86150 0.91568 1.42389 1.86450 1.06202 1.00741 1.19606 1.40318 0.92941 0.84180 0.90176 1.25485 1.03532 0.95847 1.01373 1.69798 1.58270 1.03906 1.29644 0.85234 0.76973 0.77751 0.80339 1.21892 1.22671 1.19132 0.91007 0.93289 0.92237 0.91750 0.91237 0.86798 0.86965 0.92062 0.92104 0.91838 0.91676 0.90654 0.91684 0.89797 0.91614 0.87537 0.91534 0.87046 0.89469 0.91594 0.89870 0.91789 0.79104 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.14 71.98 0.66 -2.78 16 2 C -0.11 -3.10 3.19 -9.60 -0.03 -3.13 16 3 H 0.08 2.41 8.00 -2.39 -0.02 2.39 16 4 C 0.12 3.31 6.45 86.73 0.56 3.87 16 5 N -0.61 -17.88 3.34 -810.97 -2.71 -20.59 16 6 C 0.52 15.33 7.85 87.66 0.69 16.02 16 7 O -0.59 -21.33 16.31 -3.06 -0.05 -21.38 16 8 C -0.13 -2.65 4.72 29.85 0.14 -2.51 16 9 C -0.09 -2.04 4.87 30.59 0.15 -1.89 16 10 C 0.06 1.12 5.75 71.98 0.41 1.53 16 11 O -0.40 -8.30 10.00 -148.98 -1.49 -9.79 16 12 C 0.08 1.28 2.70 30.71 0.08 1.36 16 13 C -0.18 -2.53 5.76 30.69 0.18 -2.35 16 14 C 0.06 0.76 6.84 72.02 0.49 1.25 16 15 O -0.40 -6.52 10.77 -148.98 -1.60 -8.13 16 16 C 0.06 0.73 6.84 72.01 0.49 1.23 16 17 C -0.15 -2.16 5.79 30.68 0.18 -1.98 16 18 C 0.09 2.56 6.41 86.79 0.56 3.12 16 19 C 0.17 5.87 3.17 46.38 0.15 6.02 16 20 H 0.07 2.34 8.00 -2.39 -0.02 2.32 16 21 N -0.72 -32.11 5.24 -316.38 -1.66 -33.77 16 22 C -0.24 -11.93 9.96 84.03 0.84 -11.09 16 23 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 25 N -0.97 -55.47 13.06 21.65 0.28 -55.18 16 26 Si 0.97 43.11 29.55 68.60 2.03 45.14 16 27 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 28 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.92 7.82 -2.39 -0.02 1.90 16 35 H 0.11 2.00 7.86 -2.38 -0.02 1.98 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.06 0.93 7.99 -2.39 -0.02 0.91 16 40 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 41 H 0.08 0.95 7.79 -2.38 -0.02 0.93 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.05 7.99 -2.39 -0.02 1.03 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 50 H 0.08 2.29 7.50 -2.39 -0.02 2.27 16 51 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.38 18.38 7.76 -92.71 -0.72 17.66 16 53 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -65.64 421.51 0.96 -64.68 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.15 Total: 33.59 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 6.01 Total: 5.42 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -4.08 Total: -109.54 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -3.14 Total: -39.29 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.64 0.96 -64.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755118350.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.382 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds