Wall clock time and date at job start Tue Mar 31 2020 23:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46960 * 2 1 4 4 C 1.52990 * 109.47066 * 120.00480 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46762 * 299.99614 * 5 4 2 7 7 C 1.53000 * 109.46958 * 60.00309 * 6 5 4 8 8 C 1.53000 * 109.46485 * 240.00435 * 2 1 3 9 9 H 1.09000 * 109.47166 * 299.99439 * 8 2 1 10 10 O 1.42898 * 109.47443 * 60.00162 * 8 2 1 11 11 C 1.42902 * 113.99818 * 209.99369 * 10 8 2 12 12 C 1.50695 * 109.46890 * 180.02562 * 11 10 8 13 13 O 1.21278 * 120.00527 * 359.97438 * 12 11 10 14 14 N 1.34784 * 119.99835 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99903 * 174.79997 * 14 12 11 16 16 C 1.53000 * 112.94659 * 295.31090 * 15 14 12 17 17 C 1.52996 * 109.47274 * 304.23495 * 16 15 14 18 18 O 1.42894 * 109.47308 * 178.34696 * 17 16 15 19 19 C 1.53943 * 113.73777 * 163.71900 * 15 14 12 20 20 N 1.47814 * 86.03537 * 222.08643 * 19 15 14 21 21 C 1.36943 * 134.45770 * 204.64716 * 20 19 15 22 22 H 1.07996 * 119.99921 * 179.86296 * 21 20 19 23 23 C 1.38811 * 119.99706 * 359.86647 * 21 20 19 24 24 N 1.31619 * 120.00285 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99520 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47102 * 90.00087 * 25 23 21 27 27 H 1.48505 * 109.46600 * 209.99765 * 25 23 21 28 28 H 1.48494 * 109.47185 * 329.99389 * 25 23 21 29 29 C 1.47577 * 91.05293 * 24.54994 * 20 19 15 30 30 H 1.08996 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46731 * 299.99953 * 1 2 3 32 32 H 1.09007 * 109.47250 * 59.99192 * 1 2 3 33 33 H 1.09002 * 109.47553 * 59.99384 * 4 2 1 34 34 H 1.09005 * 109.46991 * 299.99407 * 4 2 1 35 35 H 1.08997 * 109.47392 * 180.02562 * 5 4 2 36 36 H 1.08997 * 109.47702 * 59.99672 * 5 4 2 37 37 H 1.09002 * 109.46885 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47213 * 299.99691 * 6 5 4 39 39 H 1.08996 * 109.47188 * 59.99637 * 7 6 5 40 40 H 1.09005 * 109.46984 * 180.02562 * 7 6 5 41 41 H 1.09001 * 109.47432 * 300.00545 * 11 10 8 42 42 H 1.09005 * 109.46985 * 60.00224 * 11 10 8 43 43 H 0.96993 * 120.00044 * 354.80062 * 14 12 11 44 44 H 1.09004 * 109.46801 * 64.23343 * 16 15 14 45 45 H 1.08991 * 109.47306 * 184.22856 * 16 15 14 46 46 H 1.09001 * 109.46996 * 298.34980 * 17 16 15 47 47 H 1.09007 * 109.47220 * 58.34488 * 17 16 15 48 48 H 0.96701 * 114.00593 * 179.97438 * 18 17 16 49 49 H 1.08994 * 113.77287 * 336.34734 * 19 15 14 50 50 H 1.09005 * 113.76721 * 107.75128 * 19 15 14 51 51 H 0.96995 * 119.99723 * 179.97438 * 24 23 21 52 52 H 1.09000 * 113.77627 * 221.15300 * 29 20 19 53 53 H 1.09004 * 113.87374 * 89.76482 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5700 -0.7208 1.2494 6 6 4.0805 -1.4417 0.0001 7 6 3.5705 -0.7203 -1.2490 8 6 2.0399 -0.7212 -1.2493 9 1 1.6766 -1.7489 -1.2493 10 8 1.5636 -0.0475 -2.4161 11 6 1.3699 -0.9040 -3.5434 12 6 0.8697 -0.0926 -4.7106 13 8 0.6957 1.1015 -4.5890 14 7 0.6147 -0.6941 -5.8895 15 6 0.0214 0.0711 -6.9890 16 6 -1.3938 0.5626 -6.6782 17 6 -2.2761 -0.6289 -6.3006 18 8 -3.5875 -0.1657 -5.9731 19 6 0.1523 -0.6134 -8.3617 20 7 0.4817 0.7292 -8.8851 21 6 0.3896 1.3292 -10.1127 22 1 0.7050 2.3545 -10.2375 23 6 -0.1090 0.6194 -11.1964 24 7 -0.4939 -0.6300 -11.0440 25 14 -0.2339 1.4377 -12.8710 26 1 1.0267 1.2183 -13.6244 27 1 -1.3701 0.8501 -13.6254 28 1 -0.4579 2.8950 -12.6944 29 6 0.9471 1.1639 -7.5538 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8900 33 1 1.6766 -1.7490 1.2491 34 1 1.6767 -0.2075 2.1391 35 1 3.9333 -1.2350 2.1391 36 1 3.9331 0.3070 1.2497 37 1 5.1705 -1.4417 0.0006 38 1 3.7175 -2.4695 -0.0001 39 1 3.9334 0.3074 -1.2487 40 1 3.9338 -1.2341 -2.1391 41 1 2.3161 -1.3758 -3.8082 42 1 0.6379 -1.6724 -3.2944 43 1 0.8239 -1.6335 -6.0099 44 1 -1.3593 1.2670 -5.8471 45 1 -1.8077 1.0572 -7.5568 46 1 -2.3342 -1.3192 -7.1422 47 1 -1.8461 -1.1411 -5.4397 48 1 -4.2024 -0.8691 -5.7236 49 1 0.9775 -1.3229 -8.4219 50 1 -0.7859 -1.0167 -8.7428 51 1 -0.8427 -1.1257 -11.8013 52 1 0.6423 2.1768 -7.2909 53 1 2.0061 0.9784 -7.3744 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755336980.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:04 Heat of formation + Delta-G solvation = -122.262453 kcal Electronic energy + Delta-G solvation = -31051.446895 eV Core-core repulsion = 26923.182939 eV Total energy + Delta-G solvation = -4128.263956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50896 -40.42224 -39.26226 -37.70920 -37.20865 -35.27050 -33.83435 -33.47134 -32.02136 -30.98702 -29.30421 -28.41653 -26.94824 -26.86480 -24.99436 -23.43323 -23.19582 -22.21284 -21.79725 -20.75288 -20.18271 -18.79301 -18.49456 -18.22719 -17.70330 -16.94892 -16.91098 -16.66922 -16.27948 -15.85733 -15.79350 -15.50222 -15.23046 -15.14383 -14.92199 -14.79043 -14.41297 -14.05522 -13.96461 -13.63190 -13.46898 -13.34443 -13.20459 -13.09954 -12.89998 -12.80531 -12.75426 -12.58163 -12.42713 -12.25843 -12.06407 -11.97069 -11.75105 -11.73572 -11.47154 -11.41874 -11.28556 -11.15903 -10.97965 -10.87657 -10.58051 -10.33623 -10.05492 -8.97516 -7.94468 -5.27338 1.45306 1.46858 1.55566 1.67335 1.83097 2.45981 2.97678 3.14034 3.25300 3.38475 3.60384 3.70643 3.79598 3.87894 4.03247 4.11843 4.18595 4.24047 4.28243 4.30467 4.32463 4.33108 4.37627 4.47736 4.53008 4.56679 4.59140 4.70033 4.71063 4.79202 4.83827 4.93360 5.00893 5.01634 5.08436 5.12100 5.15425 5.16882 5.20651 5.21221 5.30857 5.33442 5.40317 5.44852 5.46436 5.56526 5.70124 5.88468 6.23975 6.67750 6.89648 6.92014 7.35619 7.55201 8.48527 9.22448 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.002347 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.824779 B =11927.295377 C =12775.073098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.057 0.943 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.143 4.143 8 C 0.091 3.909 9 H 0.081 0.919 10 O -0.385 6.385 11 C 0.050 3.950 12 C 0.509 3.491 13 O -0.563 6.563 14 N -0.703 5.703 15 C 0.158 3.842 16 C -0.090 4.090 17 C 0.093 3.907 18 O -0.593 6.593 19 C 0.174 3.826 20 N -0.633 5.633 21 C -0.238 4.238 22 H 0.077 0.923 23 C -0.057 4.057 24 N -0.946 5.946 25 Si 0.978 3.022 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.274 1.274 29 C 0.125 3.875 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.417 0.583 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.397 0.603 49 H 0.038 0.962 50 H 0.061 0.939 51 H 0.252 0.748 52 H 0.035 0.965 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -10.190 25.764 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.144 4.144 5 C -0.161 4.161 6 C -0.150 4.150 7 C -0.181 4.181 8 C 0.034 3.966 9 H 0.099 0.901 10 O -0.304 6.304 11 C -0.030 4.030 12 C 0.296 3.704 13 O -0.441 6.441 14 N -0.358 5.358 15 C 0.070 3.930 16 C -0.129 4.129 17 C 0.016 3.984 18 O -0.402 6.402 19 C 0.049 3.951 20 N -0.360 5.360 21 C -0.366 4.366 22 H 0.095 0.905 23 C -0.251 4.251 24 N -0.594 5.594 25 Si 0.806 3.194 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.199 1.199 29 C -0.002 4.002 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.247 0.753 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.061 0.939 52 H 0.053 0.947 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.620 -8.538 25.401 27.193 hybrid contribution 0.006 -0.340 -1.416 1.456 sum 4.626 -8.878 23.985 25.990 Atomic orbital electron populations 1.21743 0.94828 1.02110 1.01361 1.21202 0.96085 0.99641 0.93758 0.92453 1.21558 0.95629 1.01061 0.96113 1.21593 0.95417 1.00748 0.98314 1.21486 1.00805 0.99563 0.93162 1.22069 0.95387 1.01191 0.99428 1.22385 0.93467 0.96412 0.84322 0.90130 1.88037 1.86877 1.35371 1.20108 1.22328 1.03065 0.92341 0.85231 1.20984 0.77067 0.88204 0.84163 1.90714 1.52409 1.17164 1.83777 1.45820 1.63700 1.14815 1.11492 1.22171 0.91999 0.93397 0.85398 1.21181 0.92446 0.98388 1.00842 1.21952 0.82454 0.94998 0.99042 1.86442 1.22880 1.39904 1.90964 1.22467 0.98985 0.87974 0.85697 1.46015 1.73610 1.11329 1.05007 1.19293 1.36189 0.95971 0.85148 0.90516 1.25540 1.01454 0.96921 1.01204 1.69923 1.48820 1.09793 1.30874 0.85096 0.77079 0.77807 0.79439 1.21102 1.21558 1.19939 1.22866 0.96033 0.96978 0.84296 0.91750 0.92076 0.94286 0.90622 0.90862 0.90410 0.92700 0.91179 0.90668 0.92905 0.91397 0.87896 0.87271 0.74505 0.92350 0.93005 0.93205 0.91830 0.75329 0.94441 0.92097 0.93897 0.94695 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.05 71.98 0.65 -1.79 16 2 C -0.09 -1.45 2.46 -10.79 -0.03 -1.48 16 3 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.11 -1.17 5.20 30.59 0.16 -1.01 16 5 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 6 C -0.11 -1.20 5.92 30.60 0.18 -1.01 16 7 C -0.14 -2.18 5.54 30.61 0.17 -2.01 16 8 C 0.09 1.53 2.05 30.61 0.06 1.60 16 9 H 0.08 1.01 7.79 -2.39 -0.02 0.99 16 10 O -0.38 -9.43 8.85 -129.94 -1.15 -10.58 16 11 C 0.05 0.98 6.23 71.23 0.44 1.42 16 12 C 0.51 15.05 7.57 87.65 0.66 15.71 16 13 O -0.56 -22.80 14.89 16.01 0.24 -22.56 16 14 N -0.70 -19.66 4.53 -427.56 -1.94 -21.60 16 15 C 0.16 6.03 0.67 5.36 0.00 6.03 16 16 C -0.09 -3.57 4.81 30.59 0.15 -3.42 16 17 C 0.09 2.91 6.83 71.98 0.49 3.40 16 18 O -0.59 -18.28 13.66 -148.98 -2.03 -20.31 16 19 C 0.17 7.84 6.69 86.44 0.58 8.42 16 20 N -0.63 -33.30 3.55 -715.53 -2.54 -35.84 16 21 C -0.24 -13.71 10.70 84.03 0.90 -12.81 16 22 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 23 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 24 N -0.95 -55.32 11.39 21.65 0.25 -55.08 16 25 Si 0.98 46.07 29.55 68.60 2.03 48.09 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 28 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 29 C 0.12 5.68 7.55 86.49 0.65 6.33 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.04 0.89 7.68 -2.38 -0.02 0.87 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.97 7.87 -2.38 -0.02 0.95 16 41 H 0.10 1.46 7.87 -2.39 -0.02 1.44 16 42 H 0.11 1.42 8.09 -2.38 -0.02 1.40 16 43 H 0.42 8.37 8.70 -92.71 -0.81 7.56 16 44 H 0.06 2.49 7.08 -2.38 -0.02 2.48 16 45 H 0.05 2.44 8.02 -2.39 -0.02 2.42 16 46 H 0.05 1.56 7.54 -2.39 -0.02 1.55 16 47 H 0.06 1.63 7.62 -2.38 -0.02 1.62 16 48 H 0.40 7.48 9.12 -74.06 -0.68 6.80 16 49 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.06 3.01 6.56 -2.38 -0.02 3.00 16 51 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 52 H 0.03 1.69 8.10 -2.39 -0.02 1.67 16 53 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -77.68 416.33 -0.01 -77.69 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.59 Total: 24.70 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 5.73 Total: 15.48 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -4.23 Total: -112.51 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.95 Total: -53.45 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -77.68 -0.01 -77.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336980.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.576 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds