Wall clock time and date at job start Tue Mar 31 2020 23:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46858 * 2 1 4 4 C 1.52991 * 109.47275 * 119.99841 * 2 1 3 5 5 C 1.53007 * 109.47353 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46695 * 300.00004 * 5 4 2 7 7 C 1.53004 * 109.47313 * 60.00185 * 6 5 4 8 8 C 1.52999 * 109.47330 * 240.00430 * 2 1 3 9 9 H 1.09002 * 109.47224 * 59.99671 * 8 2 1 10 10 O 1.42897 * 109.47103 * 299.99507 * 8 2 1 11 11 C 1.42897 * 114.00049 * 150.00027 * 10 8 2 12 12 C 1.50701 * 109.47131 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00106 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00283 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00532 * 174.77990 * 14 12 11 16 16 C 1.53004 * 112.93989 * 292.58767 * 15 14 12 17 17 C 1.53002 * 109.47231 * 304.57876 * 16 15 14 18 18 O 1.42897 * 109.47401 * 185.00669 * 17 16 15 19 19 C 1.53943 * 113.74303 * 160.85264 * 15 14 12 20 20 N 1.47580 * 86.11422 * 222.04856 * 19 15 14 21 21 C 1.36945 * 134.49214 * 204.64223 * 20 19 15 22 22 H 1.07994 * 119.99683 * 173.98278 * 21 20 19 23 23 C 1.38810 * 119.99644 * 353.98522 * 21 20 19 24 24 N 1.31616 * 120.00089 * 5.04311 * 23 21 20 25 25 Si 1.86807 * 119.99509 * 185.04309 * 23 21 20 26 26 H 1.48500 * 109.46876 * 94.99370 * 25 23 21 27 27 H 1.48504 * 109.46831 * 214.99049 * 25 23 21 28 28 H 1.48498 * 109.47277 * 334.98841 * 25 23 21 29 29 C 1.47584 * 91.01859 * 24.63856 * 20 19 15 30 30 H 1.09007 * 109.46362 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47183 * 299.99415 * 1 2 3 32 32 H 1.08994 * 109.47079 * 60.00487 * 1 2 3 33 33 H 1.08998 * 109.47280 * 300.00780 * 4 2 1 34 34 H 1.09005 * 109.47047 * 60.00275 * 4 2 1 35 35 H 1.08996 * 109.47234 * 59.99955 * 5 4 2 36 36 H 1.09002 * 109.47313 * 180.02562 * 5 4 2 37 37 H 1.09004 * 109.46967 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.47240 * 299.99947 * 6 5 4 39 39 H 1.08995 * 109.47433 * 180.02562 * 7 6 5 40 40 H 1.08997 * 109.46937 * 59.98969 * 7 6 5 41 41 H 1.09000 * 109.47157 * 60.00694 * 11 10 8 42 42 H 1.08997 * 109.47152 * 299.99914 * 11 10 8 43 43 H 0.97003 * 119.99446 * 354.77688 * 14 12 11 44 44 H 1.08998 * 109.47438 * 64.58155 * 16 15 14 45 45 H 1.09005 * 109.46650 * 184.58506 * 16 15 14 46 46 H 1.09003 * 109.46668 * 305.00804 * 17 16 15 47 47 H 1.09000 * 109.46646 * 65.00278 * 17 16 15 48 48 H 0.96697 * 113.99833 * 180.02562 * 18 17 16 49 49 H 1.08994 * 113.76593 * 336.34596 * 19 15 14 50 50 H 1.08993 * 113.76901 * 107.74711 * 19 15 14 51 51 H 0.97001 * 119.99506 * 179.97438 * 24 23 21 52 52 H 1.09002 * 113.77013 * 221.05878 * 29 20 19 53 53 H 1.08997 * 113.87097 * 89.67006 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2495 6 6 4.0805 -1.4416 0.0003 7 6 3.5705 -0.7203 -1.2490 8 6 2.0401 -0.7211 -1.2493 9 1 1.6767 -0.2073 -2.1393 10 8 1.5639 -2.0684 -1.2493 11 6 1.3702 -2.6164 -2.5548 12 6 0.8689 -4.0326 -2.4358 13 8 0.6951 -4.5245 -1.3409 14 7 0.6147 -4.7530 -3.5462 15 6 0.2377 -6.1642 -3.4335 16 6 1.3756 -7.0459 -2.9150 17 6 2.6051 -6.8694 -3.8083 18 8 3.6282 -7.7776 -3.3955 19 6 -0.4594 -6.7216 -4.6878 20 7 -1.3793 -7.3984 -3.7530 21 6 -2.1719 -8.5129 -3.8247 22 1 -2.6941 -8.8615 -2.9461 23 6 -2.3040 -9.1943 -5.0268 24 7 -1.5917 -8.8297 -6.0717 25 14 -3.4929 -10.6289 -5.1613 26 1 -4.7907 -10.1475 -5.6991 27 1 -2.9288 -11.6553 -6.0743 28 1 -3.7042 -11.2244 -3.8174 29 6 -1.1019 -6.3919 -2.7099 30 1 -0.3632 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6766 -0.2074 2.1392 34 1 1.6767 -1.7489 1.2492 35 1 3.9331 0.3071 1.2497 36 1 3.9335 -1.2348 2.1393 37 1 5.1706 -1.4416 0.0007 38 1 3.7176 -2.4693 0.0001 39 1 3.9338 -1.2341 -2.1390 40 1 3.9334 0.3075 -1.2487 41 1 2.3165 -2.6098 -3.0957 42 1 0.6382 -2.0166 -3.0956 43 1 0.6813 -4.3371 -4.4199 44 1 1.6236 -6.7560 -1.8940 45 1 1.0622 -8.0898 -2.9305 46 1 2.3340 -7.0739 -4.8441 47 1 2.9717 -5.8464 -3.7239 48 1 4.4393 -7.7207 -3.9189 49 1 -0.9388 -5.9577 -5.2999 50 1 0.1601 -7.4059 -5.2672 51 1 -1.6838 -9.3062 -6.9116 52 1 -0.9952 -6.8132 -1.7102 53 1 -1.7691 -5.5306 -2.7394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755336982.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:12 Heat of formation + Delta-G solvation = -120.570460 kcal Electronic energy + Delta-G solvation = -31448.870527 eV Core-core repulsion = 27320.679940 eV Total energy + Delta-G solvation = -4128.190586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.50276 -40.48772 -39.22785 -37.71130 -36.82979 -35.26658 -33.83085 -33.44900 -32.00910 -31.05997 -29.33634 -28.43094 -26.94619 -26.86916 -24.98458 -23.42805 -23.30340 -22.28750 -21.71339 -20.52626 -20.11309 -18.78794 -18.51832 -18.16443 -17.39373 -17.13952 -16.86947 -16.62004 -16.20466 -16.03537 -15.85331 -15.48062 -15.34846 -15.06485 -14.86918 -14.55241 -14.38144 -14.05842 -13.87557 -13.73215 -13.42473 -13.36311 -13.25484 -13.00410 -12.87862 -12.81442 -12.60378 -12.48687 -12.40425 -12.37857 -12.23828 -12.03841 -11.75123 -11.71874 -11.42441 -11.37066 -11.31673 -10.95322 -10.89332 -10.80455 -10.57496 -10.30213 -10.04801 -8.96647 -7.96206 -5.28314 1.45119 1.46117 1.55357 1.70281 1.86902 2.45975 3.05981 3.14296 3.23464 3.40689 3.58835 3.75057 3.85163 3.90988 3.96176 4.12384 4.24684 4.27450 4.29416 4.30337 4.31315 4.37565 4.47191 4.48011 4.59676 4.64602 4.67734 4.69843 4.71973 4.80986 4.84504 4.95059 4.99967 5.01764 5.09532 5.11607 5.12769 5.16199 5.19394 5.25886 5.33743 5.39092 5.45351 5.46309 5.49808 5.65662 5.70846 5.87975 6.29307 6.70019 6.89222 6.92070 7.38072 7.54485 8.48753 9.21220 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.002577 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.855444 B =10864.435133 C =11709.952253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.102 0.898 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.137 4.137 8 C 0.086 3.914 9 H 0.082 0.918 10 O -0.375 6.375 11 C 0.049 3.951 12 C 0.509 3.491 13 O -0.563 6.563 14 N -0.704 5.704 15 C 0.157 3.843 16 C -0.089 4.089 17 C 0.094 3.906 18 O -0.594 6.594 19 C 0.178 3.822 20 N -0.632 5.632 21 C -0.240 4.240 22 H 0.077 0.923 23 C -0.056 4.056 24 N -0.944 5.944 25 Si 0.977 3.023 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.273 1.273 29 C 0.127 3.873 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.417 0.583 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.397 0.603 49 H 0.037 0.963 50 H 0.056 0.944 51 H 0.252 0.748 52 H 0.034 0.966 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 22.912 4.846 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.120 0.880 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.175 4.175 8 C 0.029 3.971 9 H 0.100 0.900 10 O -0.294 6.294 11 C -0.031 4.031 12 C 0.296 3.704 13 O -0.440 6.440 14 N -0.359 5.359 15 C 0.070 3.930 16 C -0.128 4.128 17 C 0.016 3.984 18 O -0.403 6.403 19 C 0.052 3.948 20 N -0.359 5.359 21 C -0.368 4.368 22 H 0.095 0.905 23 C -0.250 4.250 24 N -0.592 5.592 25 Si 0.804 3.196 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.198 1.198 29 C 0.000 4.000 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.247 0.753 49 H 0.055 0.945 50 H 0.075 0.925 51 H 0.061 0.939 52 H 0.053 0.947 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.007 22.027 6.107 26.299 hybrid contribution -0.605 -0.838 -1.054 1.477 sum 12.402 21.188 5.052 25.066 Atomic orbital electron populations 1.21763 0.95277 1.01178 1.02050 1.21260 0.95713 0.99379 0.93785 0.88022 1.21496 0.95943 1.00016 0.97554 1.21506 0.95113 1.01064 0.97563 1.21410 0.99957 0.99047 0.95030 1.22042 0.95064 1.02117 0.98245 1.22405 0.93774 0.81950 0.99020 0.90026 1.88065 1.86804 1.29002 1.25515 1.22310 1.02859 0.90491 0.87414 1.21009 0.76940 0.88510 0.83959 1.90719 1.52137 1.72875 1.28280 1.45817 1.70480 1.09932 1.09673 1.22184 0.92152 0.80403 0.98299 1.21190 0.93540 0.98875 0.99218 1.21948 0.87100 0.92455 0.96862 1.86446 1.28324 1.63048 1.62437 1.22358 0.89007 0.92790 0.90652 1.45957 1.51575 1.25119 1.13260 1.19292 1.20699 1.01234 0.95555 0.90534 1.25563 1.01671 1.02526 0.95231 1.69940 1.43430 1.43948 1.01890 0.85098 0.78422 0.78480 0.77555 1.21187 1.21602 1.19788 1.22834 0.93168 0.91005 0.92944 0.94459 0.92230 0.91866 0.91773 0.94187 0.90501 0.92705 0.91563 0.94155 0.91353 0.89064 0.87666 0.87838 0.74566 0.92470 0.92970 0.93077 0.91879 0.75319 0.94527 0.92524 0.93864 0.94732 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.05 71.98 0.65 -1.81 16 2 C -0.08 -1.25 2.55 -10.80 -0.03 -1.28 16 3 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 4 C -0.11 -2.07 5.06 30.59 0.15 -1.91 16 5 C -0.12 -1.81 5.92 30.60 0.18 -1.63 16 6 C -0.12 -1.98 5.78 30.60 0.18 -1.80 16 7 C -0.14 -1.78 5.63 30.61 0.17 -1.60 16 8 C 0.09 1.30 2.35 30.61 0.07 1.38 16 9 H 0.08 0.89 7.79 -2.39 -0.02 0.87 16 10 O -0.38 -8.62 7.50 -129.94 -0.97 -9.59 16 11 C 0.05 0.92 6.23 71.24 0.44 1.37 16 12 C 0.51 14.81 7.58 87.66 0.66 15.47 16 13 O -0.56 -22.47 14.97 15.99 0.24 -22.24 16 14 N -0.70 -19.54 4.64 -427.57 -1.98 -21.53 16 15 C 0.16 5.99 0.68 5.36 0.00 5.99 16 16 C -0.09 -3.52 4.86 30.60 0.15 -3.37 16 17 C 0.09 2.89 6.77 71.98 0.49 3.38 16 18 O -0.59 -18.22 13.66 -148.98 -2.04 -20.25 16 19 C 0.18 8.02 6.57 86.48 0.57 8.59 16 20 N -0.63 -33.39 3.54 -716.25 -2.54 -35.92 16 21 C -0.24 -13.86 10.70 84.03 0.90 -12.96 16 22 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 23 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 24 N -0.94 -55.38 11.49 21.65 0.25 -55.13 16 25 Si 0.98 46.11 29.56 68.60 2.03 48.14 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 29 C 0.13 5.80 7.38 86.48 0.64 6.44 16 30 H 0.04 0.86 7.68 -2.38 -0.02 0.84 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.02 7.68 -2.38 -0.02 1.01 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.04 0.95 7.68 -2.39 -0.02 0.93 16 39 H 0.07 0.82 7.87 -2.39 -0.02 0.80 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 1.35 7.87 -2.39 -0.02 1.33 16 42 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 43 H 0.42 8.32 8.72 -92.71 -0.81 7.51 16 44 H 0.06 2.40 7.29 -2.39 -0.02 2.38 16 45 H 0.05 2.45 8.02 -2.38 -0.02 2.43 16 46 H 0.05 1.56 7.45 -2.39 -0.02 1.55 16 47 H 0.06 1.60 7.84 -2.39 -0.02 1.58 16 48 H 0.40 7.43 9.12 -74.06 -0.68 6.76 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.06 2.81 6.73 -2.39 -0.02 2.79 16 51 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 52 H 0.03 1.68 8.10 -2.39 -0.02 1.66 16 53 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.90 414.78 0.10 -77.80 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.59 Total: 25.19 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.70 Total: 13.53 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.27 Total: -112.59 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -2.77 Total: -52.08 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -77.90 0.10 -77.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336982.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.768 kcal (2) G-P(sol) polarization free energy of solvation -77.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds