Wall clock time and date at job start Wed Apr 1 2020 01:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46951 * 2 1 4 4 N 1.46501 * 109.47063 * 119.99583 * 2 1 3 5 5 C 1.34772 * 120.00269 * 275.28023 * 4 2 1 6 6 O 1.21290 * 119.99868 * 359.72418 * 5 4 2 7 7 C 1.50703 * 120.00286 * 179.72395 * 5 4 2 8 8 O 1.42905 * 109.47153 * 180.02562 * 7 5 4 9 9 C 1.42897 * 113.99689 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46740 * 179.97438 * 9 8 7 11 11 H 1.08995 * 110.33246 * 305.69471 * 10 9 8 12 12 C 1.54479 * 110.37223 * 183.44910 * 10 9 8 13 13 C 1.54511 * 104.06451 * 217.19186 * 12 10 9 14 14 C 1.54483 * 104.06055 * 359.97438 * 13 12 10 15 15 O 1.44424 * 110.37564 * 67.94707 * 10 9 8 16 16 C 1.52998 * 109.47503 * 239.99821 * 2 1 3 17 17 C 1.53041 * 109.46146 * 180.02562 * 16 2 1 18 18 C 1.53187 * 109.31229 * 178.61479 * 17 16 2 19 19 N 1.46926 * 108.77960 * 54.63259 * 18 17 16 20 20 C 1.36931 * 120.63451 * 126.36556 * 19 18 17 21 21 H 1.08000 * 120.00394 * 207.69222 * 20 19 18 22 22 C 1.38816 * 119.99961 * 27.69933 * 20 19 18 23 23 N 1.31622 * 119.99831 * 17.35978 * 22 20 19 24 24 Si 1.86791 * 120.00319 * 197.36173 * 22 20 19 25 25 H 1.48500 * 109.47020 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47398 * 120.00027 * 24 22 20 27 27 H 1.48509 * 109.47354 * 239.99833 * 24 22 20 28 28 C 1.46930 * 118.73731 * 306.39259 * 19 18 17 29 29 C 1.53038 * 109.45938 * 59.99684 * 16 2 1 30 30 H 1.08994 * 109.47717 * 300.00104 * 1 2 3 31 31 H 1.09005 * 109.47303 * 60.00636 * 1 2 3 32 32 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00041 * 95.00181 * 4 2 1 34 34 H 1.08997 * 109.46769 * 299.99628 * 7 5 4 35 35 H 1.08997 * 109.46856 * 59.99516 * 7 5 4 36 36 H 1.09006 * 109.47007 * 299.99415 * 9 8 7 37 37 H 1.09000 * 109.47476 * 59.99859 * 9 8 7 38 38 H 1.09005 * 110.51240 * 335.83311 * 12 10 9 39 39 H 1.08995 * 110.51426 * 98.54360 * 12 10 9 40 40 H 1.08988 * 110.51515 * 118.64429 * 13 12 10 41 41 H 1.09004 * 110.50787 * 241.35260 * 13 12 10 42 42 H 1.09002 * 110.36689 * 142.81133 * 14 13 12 43 43 H 1.08998 * 110.37059 * 265.04180 * 14 13 12 44 44 H 1.09004 * 109.45485 * 300.02825 * 16 2 1 45 45 H 1.09000 * 109.49393 * 298.56256 * 17 16 2 46 46 H 1.08993 * 109.49891 * 58.65939 * 17 16 2 47 47 H 1.09002 * 109.58511 * 294.84712 * 18 17 16 48 48 H 1.09003 * 109.58828 * 174.41896 * 18 17 16 49 49 H 0.96997 * 120.00384 * 180.02562 * 23 22 20 50 50 H 1.08998 * 109.58907 * 293.82257 * 28 19 18 51 51 H 1.09001 * 109.58834 * 173.39327 * 28 19 18 52 52 H 1.08994 * 109.50194 * 301.33671 * 29 16 2 53 53 H 1.08995 * 109.49414 * 61.40545 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1417 -0.0196 2.3585 6 8 1.8531 1.1573 2.4130 7 6 2.6381 -0.7314 3.5906 8 8 2.6806 0.1855 4.6859 9 6 3.1408 -0.3917 5.9094 10 6 3.1458 0.6750 7.0063 11 1 3.7244 1.5422 6.6885 12 6 3.7215 0.0954 8.3174 13 6 2.8686 0.7533 9.4251 14 6 1.8788 1.6529 8.6522 15 8 1.7945 1.0650 7.3345 16 6 2.0401 -0.7213 -1.2492 17 6 3.5705 -0.7216 -1.2485 18 6 4.0774 -1.4745 -2.4826 19 7 3.4746 -0.8770 -3.6819 20 6 4.2603 -0.4506 -4.7191 21 1 3.9212 0.3498 -5.3600 22 6 5.4928 -1.0473 -4.9471 23 7 5.7659 -2.2185 -4.4122 24 14 6.7636 -0.1882 -6.0130 25 1 6.2147 1.1059 -6.4917 26 1 7.9923 0.0590 -5.2164 27 1 7.0939 -1.0468 -7.1788 28 6 2.0127 -0.7451 -3.7468 29 6 1.5298 0.0003 -2.4986 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 1.1527 34 1 1.9642 -1.5535 3.8314 35 1 3.6381 -1.1236 3.4054 36 1 2.4779 -1.2074 6.1983 37 1 4.1515 -0.7761 5.7723 38 1 3.6059 -0.9882 8.3392 39 1 4.7702 0.3708 8.4286 40 1 2.3313 -0.0050 9.9945 41 1 3.4957 1.3539 10.0840 42 1 0.9016 1.6441 9.1351 43 1 2.2613 2.6717 8.5899 44 1 1.6762 -1.7488 -1.2491 45 1 3.9345 0.3055 -1.2740 46 1 3.9338 -1.2146 -0.3469 47 1 3.7907 -2.5239 -2.4137 48 1 5.1629 -1.3931 -2.5400 49 1 6.6272 -2.6353 -4.5711 50 1 1.5576 -1.7350 -3.7810 51 1 1.7358 -0.1824 -4.6384 52 1 0.4401 0.0213 -2.4871 53 1 1.9132 1.0205 -2.5116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755845237.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:57 Heat of formation + Delta-G solvation = -139.834503 kcal Electronic energy + Delta-G solvation = -30012.089728 eV Core-core repulsion = 25883.063790 eV Total energy + Delta-G solvation = -4129.025938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.11014 -40.43490 -39.49166 -38.28874 -36.72762 -34.55119 -33.14111 -32.79878 -31.84785 -31.75784 -30.46721 -28.57977 -27.14562 -26.07522 -24.62523 -23.58087 -22.93018 -22.27293 -21.88817 -21.50037 -20.65379 -18.78326 -18.29530 -18.00690 -17.50744 -17.13091 -16.87640 -16.71279 -16.45827 -16.32502 -15.78567 -15.37019 -15.27989 -15.13907 -14.87819 -14.70232 -14.61104 -14.31884 -13.99412 -13.88421 -13.57525 -13.21650 -13.17108 -12.99074 -12.77423 -12.71879 -12.64671 -12.62662 -12.39433 -12.21158 -12.16512 -12.14635 -11.94635 -11.79884 -11.49299 -11.46825 -11.20855 -11.09569 -10.77296 -10.75188 -10.71958 -10.52872 -10.05689 -8.65492 -7.86993 -5.30620 1.44255 1.46823 1.56791 1.61083 1.83022 2.51122 2.89421 2.96820 3.26865 3.64906 3.69089 3.73124 3.81868 3.90324 3.99008 3.99300 4.07388 4.15592 4.17773 4.27300 4.31602 4.42430 4.42956 4.50130 4.50407 4.57569 4.57769 4.61566 4.76240 4.80378 4.83177 4.88166 4.93530 4.94880 5.01108 5.06899 5.08264 5.11863 5.16630 5.24187 5.30483 5.39427 5.45398 5.51529 5.58828 5.68054 5.81001 5.87704 6.08312 6.40793 6.60325 7.16919 7.27819 7.89628 8.39568 9.18963 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.001890 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.797778 B =14813.922690 C =15796.866886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.057 0.943 4 N -0.708 5.708 5 C 0.508 3.492 6 O -0.577 6.577 7 C 0.046 3.954 8 O -0.396 6.396 9 C 0.062 3.938 10 C 0.066 3.934 11 H 0.063 0.937 12 C -0.141 4.141 13 C -0.149 4.149 14 C 0.030 3.970 15 O -0.399 6.399 16 C -0.072 4.072 17 C -0.119 4.119 18 C 0.177 3.823 19 N -0.612 5.612 20 C -0.260 4.260 21 H 0.062 0.938 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.141 3.859 29 C -0.116 4.116 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.415 0.585 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.004 0.996 48 H 0.048 0.952 49 H 0.249 0.751 50 H 0.021 0.979 51 H 0.050 0.950 52 H 0.090 0.910 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -0.637 27.210 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.076 0.924 4 N -0.361 5.361 5 C 0.295 3.705 6 O -0.456 6.456 7 C -0.033 4.033 8 O -0.315 6.315 9 C -0.014 4.014 10 C 0.009 3.991 11 H 0.081 0.919 12 C -0.179 4.179 13 C -0.187 4.187 14 C -0.046 4.046 15 O -0.318 6.318 16 C -0.091 4.091 17 C -0.158 4.158 18 C 0.051 3.949 19 N -0.336 5.336 20 C -0.391 4.391 21 H 0.080 0.920 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.194 1.194 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.015 3.985 29 C -0.156 4.156 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.022 0.978 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.039 0.961 51 H 0.069 0.931 52 H 0.108 0.892 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.529 0.288 27.070 28.099 hybrid contribution 1.252 -0.131 -0.821 1.503 sum -6.277 0.157 26.249 26.989 Atomic orbital electron populations 1.22147 0.94033 1.03052 1.02135 1.20880 0.94640 0.96034 0.83383 0.92434 1.45871 1.66901 1.14789 1.08549 1.20884 0.77245 0.87017 0.85339 1.90708 1.51081 1.18236 1.85617 1.22346 1.03834 0.92231 0.84926 1.88025 1.88028 1.36901 1.18558 1.22864 1.00557 0.95445 0.82514 1.23171 0.83962 0.96962 0.95025 0.91856 1.22926 1.01056 1.02159 0.91760 1.22942 0.97857 0.99733 0.98171 1.23649 1.01479 0.96850 0.82619 1.89242 1.27628 1.80289 1.34683 1.21199 0.94924 0.99941 0.93028 1.22009 0.95747 0.99712 0.98357 1.20596 0.97381 0.92596 0.84301 1.44345 1.01316 1.72105 1.15856 1.19529 0.99857 1.11771 1.07937 0.91992 1.25722 1.01762 0.96034 1.01110 1.70172 1.22751 1.15344 1.49626 0.85286 0.79250 0.78325 0.78081 1.19433 1.21741 1.21769 1.21070 0.83745 0.97042 0.96602 1.21964 1.00740 0.98648 0.94221 0.93852 0.90379 0.90712 0.74751 0.87262 0.87326 0.91160 0.89021 0.89094 0.88488 0.89637 0.88777 0.88311 0.92228 0.89846 0.94714 0.91092 0.97834 0.93308 0.94148 0.96104 0.93121 0.89207 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.13 71.98 0.66 -2.94 16 2 C 0.16 4.16 2.16 44.99 0.10 4.26 16 3 H 0.06 1.91 7.58 -2.38 -0.02 1.89 16 4 N -0.71 -16.18 4.36 -442.53 -1.93 -18.11 16 5 C 0.51 13.83 7.87 87.66 0.69 14.52 16 6 O -0.58 -22.15 16.17 15.98 0.26 -21.89 16 7 C 0.05 0.87 6.42 71.24 0.46 1.32 16 8 O -0.40 -10.03 9.88 -127.67 -1.26 -11.29 16 9 C 0.06 1.02 5.54 71.98 0.40 1.42 16 10 C 0.07 1.16 3.57 31.10 0.11 1.27 16 11 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 12 C -0.14 -1.35 6.63 31.61 0.21 -1.14 16 13 C -0.15 -1.33 7.09 31.61 0.22 -1.10 16 14 C 0.03 0.44 7.63 72.49 0.55 0.99 16 15 O -0.40 -9.15 11.35 -148.60 -1.69 -10.84 16 16 C -0.07 -2.11 1.79 -10.77 -0.02 -2.12 16 17 C -0.12 -4.28 5.22 30.67 0.16 -4.12 16 18 C 0.18 8.30 5.31 86.36 0.46 8.76 16 19 N -0.61 -30.56 2.99 -699.08 -2.09 -32.65 16 20 C -0.26 -14.49 9.58 84.04 0.81 -13.69 16 21 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 22 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 23 N -0.93 -54.95 11.19 21.65 0.24 -54.70 16 24 Si 0.96 45.41 29.59 68.60 2.03 47.44 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 28 C 0.14 5.65 6.52 86.36 0.56 6.21 16 29 C -0.12 -3.70 5.04 30.67 0.15 -3.54 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.68 6.40 -2.38 -0.02 1.66 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.42 6.87 8.39 -92.71 -0.78 6.09 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.65 7.87 -2.38 -0.02 0.63 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 45 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 2.17 7.41 -2.39 -0.02 2.16 16 47 H 0.00 0.17 8.14 -2.39 -0.02 0.16 16 48 H 0.05 2.65 6.04 -2.39 -0.01 2.63 16 49 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 50 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 52 H 0.09 2.27 6.36 -2.39 -0.02 2.25 16 53 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -79.02 413.84 1.60 -77.42 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.10 Total: 16.97 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.94 Total: 7.65 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.78 Total: -105.47 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.69 Total: -44.02 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -79.02 1.60 -77.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755845237.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.410 kcal (2) G-P(sol) polarization free energy of solvation -79.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds