Wall clock time and date at job start Wed Apr 1 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47593 * 2 1 4 4 C 1.52997 * 109.46846 * 240.00097 * 2 1 3 5 5 O 1.42898 * 109.47095 * 65.00497 * 4 2 1 6 6 C 1.52995 * 109.47376 * 120.00377 * 2 1 3 7 7 C 1.53045 * 109.46018 * 300.06884 * 6 2 1 8 8 C 1.53189 * 109.31369 * 178.61234 * 7 6 2 9 9 N 1.46923 * 108.77845 * 54.63235 * 8 7 6 10 10 C 1.34775 * 120.63557 * 126.41140 * 9 8 7 11 11 O 1.21353 * 120.00499 * 173.00147 * 10 9 8 12 12 C 1.49455 * 119.99474 * 353.00096 * 10 9 8 13 13 O 1.21341 * 120.00189 * 353.48741 * 12 10 9 14 14 N 1.34776 * 119.99745 * 173.48176 * 12 10 9 15 15 C 1.46503 * 120.00101 * 180.02562 * 14 12 10 16 16 C 1.53003 * 109.47281 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.46966 * 299.99624 * 16 15 14 18 18 C 1.52998 * 109.47318 * 59.99463 * 16 15 14 19 19 C 1.50702 * 109.46788 * 179.97438 * 16 15 14 20 20 H 1.07993 * 120.00211 * 0.02562 * 19 16 15 21 21 C 1.37880 * 119.99460 * 179.97438 * 19 16 15 22 22 N 1.31515 * 120.00305 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99807 * 179.97438 * 21 19 16 24 24 H 1.48504 * 109.46900 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46769 * 119.99874 * 23 21 19 26 26 H 1.48494 * 109.47325 * 239.99898 * 23 21 19 27 27 C 1.46925 * 118.73974 * 306.39230 * 9 8 7 28 28 C 1.53035 * 109.46433 * 179.97438 * 6 2 1 29 29 H 1.09001 * 109.46930 * 300.00210 * 1 2 3 30 30 H 1.08999 * 109.46924 * 59.98979 * 1 2 3 31 31 H 1.08989 * 109.47452 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47566 * 305.00185 * 4 2 1 33 33 H 1.09000 * 109.47201 * 184.99833 * 4 2 1 34 34 H 0.96707 * 114.00139 * 180.02562 * 5 4 2 35 35 H 1.09004 * 109.46231 * 60.02168 * 6 2 1 36 36 H 1.09007 * 109.49602 * 298.56272 * 7 6 2 37 37 H 1.09002 * 109.49730 * 58.65755 * 7 6 2 38 38 H 1.08999 * 109.58610 * 294.84706 * 8 7 6 39 39 H 1.09003 * 109.58650 * 174.42185 * 8 7 6 40 40 H 0.97001 * 120.00150 * 0.02562 * 14 12 10 41 41 H 1.08999 * 109.46790 * 300.00233 * 15 14 12 42 42 H 1.08991 * 109.47286 * 59.99766 * 15 14 12 43 43 H 1.09003 * 109.46929 * 59.99894 * 17 16 15 44 44 H 1.08991 * 109.47299 * 180.02562 * 17 16 15 45 45 H 1.09004 * 109.47147 * 300.00401 * 17 16 15 46 46 H 1.09001 * 109.46695 * 60.00597 * 18 16 15 47 47 H 1.09004 * 109.46921 * 179.97438 * 18 16 15 48 48 H 1.08993 * 109.47158 * 300.00375 * 18 16 15 49 49 H 0.97003 * 120.00183 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.58859 * 293.82083 * 27 9 8 51 51 H 1.09000 * 109.58877 * 173.39018 * 27 9 8 52 52 H 1.09001 * 109.49579 * 301.33452 * 28 6 2 53 53 H 1.09000 * 109.49523 * 61.40019 * 28 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 1.6620 0.0169 -2.4130 6 6 2.0401 -0.7213 1.2491 7 6 1.5284 -0.0007 2.4986 8 6 2.0122 -0.7455 3.7468 9 7 3.4741 -0.8770 3.6822 10 6 4.2471 -0.4581 4.7037 11 8 5.4390 -0.6860 4.6958 12 6 3.6363 0.2870 5.8462 13 8 2.4699 0.6183 5.8002 14 7 4.3810 0.5909 6.9276 15 6 3.7822 1.3209 8.0478 16 6 4.8348 1.5361 9.1372 17 6 5.3461 0.1800 9.6274 18 6 6.0013 2.3451 8.5666 19 6 4.2189 2.2876 10.2892 20 1 3.1806 2.5817 10.2486 21 6 4.9808 2.5985 11.3955 22 7 6.2449 2.2390 11.4456 23 14 4.2177 3.5306 12.8232 24 1 2.7916 3.8157 12.5224 25 1 4.3081 2.7079 14.0562 26 1 4.9463 4.8084 13.0262 27 6 4.0773 -1.4742 2.4830 28 6 3.5704 -0.7217 1.2486 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0275 -0.0005 32 1 1.6053 -1.7197 -1.2952 33 1 3.1262 -0.7995 -1.2057 34 1 1.9525 -0.3832 -3.2441 35 1 1.6770 -1.7491 1.2487 36 1 1.9114 1.0197 2.5126 37 1 0.4386 0.0193 2.4864 38 1 1.5574 -1.7355 3.7808 39 1 1.7349 -0.1830 4.6384 40 1 5.3136 0.3263 6.9642 41 1 3.4183 2.2871 7.6987 42 1 2.9510 0.7448 8.4540 43 1 5.7916 -0.3631 8.7939 44 1 6.0956 0.3333 10.4037 45 1 4.5150 -0.3964 10.0338 46 1 5.6370 3.3113 8.2175 47 1 6.7510 2.4988 9.3429 48 1 6.4468 1.8020 7.7332 49 1 6.7810 2.4581 12.2237 50 1 3.7910 -2.5236 2.4139 51 1 5.1628 -1.3924 2.5406 52 1 3.9337 -1.2148 0.3469 53 1 3.9345 0.3054 1.2735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593931001.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:58 Heat of formation + Delta-G solvation = -142.274435 kcal Electronic energy + Delta-G solvation = -30800.319528 eV Core-core repulsion = 26671.187787 eV Total energy + Delta-G solvation = -4129.131741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07402 -40.27415 -39.33171 -38.31664 -37.70418 -35.71983 -34.94452 -32.76576 -32.34609 -31.67000 -28.24785 -27.59341 -27.49333 -27.19656 -26.22984 -24.57506 -23.68618 -22.11146 -21.21036 -20.73813 -20.46823 -18.97535 -18.33662 -17.99866 -17.74561 -17.12284 -16.75544 -16.60690 -16.23107 -15.88639 -15.74299 -15.46369 -15.23497 -15.16189 -14.81040 -14.71326 -14.54675 -14.34729 -14.06245 -13.92162 -13.42701 -13.26381 -13.21803 -13.13337 -12.98998 -12.71920 -12.65329 -12.55697 -12.39643 -12.28753 -12.17678 -12.11739 -11.95118 -11.56499 -11.51196 -11.41354 -11.25497 -11.15653 -10.74272 -10.71740 -10.41851 -10.20019 -10.01435 -9.79179 -8.01419 -6.17710 0.31386 1.32193 1.43276 1.47817 1.56840 2.10568 2.43274 2.55509 3.22541 3.29670 3.30931 3.69254 3.77501 3.99722 4.08310 4.15696 4.30504 4.34099 4.39802 4.45115 4.47714 4.49759 4.55662 4.67501 4.69385 4.78891 4.80440 4.83388 4.95223 4.96819 4.99705 5.01132 5.03486 5.08439 5.10995 5.16844 5.17657 5.24315 5.30398 5.41873 5.47710 5.53643 5.60681 5.64253 5.68103 5.98844 6.10752 6.18835 6.26760 6.41231 6.71661 6.86617 6.94558 6.96381 7.50253 8.97984 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.002059 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.960104 B =13595.565610 C =14141.955809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.058 0.942 4 C 0.076 3.924 5 O -0.596 6.596 6 C -0.074 4.074 7 C -0.120 4.120 8 C 0.045 3.955 9 N -0.574 5.574 10 C 0.507 3.493 11 O -0.549 6.549 12 C 0.499 3.501 13 O -0.531 6.531 14 N -0.679 5.679 15 C 0.143 3.857 16 C 0.049 3.951 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.522 4.522 20 H 0.053 0.947 21 C 0.024 3.976 22 N -0.901 5.901 23 Si 0.949 3.051 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.103 3.897 28 C -0.126 4.126 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.412 0.588 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.023 0.977 47 H 0.063 0.937 48 H 0.028 0.972 49 H 0.259 0.741 50 H 0.094 0.906 51 H 0.082 0.918 52 H 0.103 0.897 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 -9.911 -24.982 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.001 4.001 5 O -0.405 6.405 6 C -0.093 4.093 7 C -0.158 4.158 8 C -0.075 4.075 9 N -0.306 5.306 10 C 0.290 3.710 11 O -0.427 6.427 12 C 0.281 3.719 13 O -0.411 6.411 14 N -0.330 5.330 15 C 0.020 3.980 16 C 0.048 3.952 17 C -0.181 4.181 18 C -0.182 4.182 19 C -0.561 4.561 20 H 0.071 0.929 21 C -0.175 4.175 22 N -0.540 5.540 23 Si 0.776 3.224 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.018 4.018 28 C -0.164 4.164 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.245 0.755 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.156 0.844 40 H 0.250 0.750 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.082 0.918 48 H 0.047 0.953 49 H 0.069 0.931 50 H 0.112 0.888 51 H 0.100 0.900 52 H 0.121 0.879 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.295 -9.398 -24.436 27.464 hybrid contribution 0.557 0.274 0.665 0.910 sum -7.738 -9.124 -23.771 26.612 Atomic orbital electron populations 1.21794 0.94453 1.02236 1.01564 1.21092 0.96715 0.99495 0.93074 0.92387 1.22369 0.98733 0.94273 0.84716 1.86436 1.82022 1.54367 1.17627 1.21122 0.94519 1.00481 0.93165 1.21906 1.01950 0.98714 0.93186 1.23293 0.76975 1.03247 1.03992 1.48096 1.08606 1.57653 1.16284 1.20027 0.86449 0.80337 0.84232 1.90732 1.15850 1.57026 1.79091 1.20370 0.86404 0.81103 0.84027 1.90295 1.16447 1.54863 1.79532 1.46135 1.15511 1.54627 1.16693 1.21572 0.96683 0.94567 0.85146 1.18400 0.91747 0.93655 0.91387 1.21699 1.00315 0.96088 1.00008 1.21706 1.00043 0.97803 0.98616 1.21257 0.96851 1.36165 1.01810 0.92910 1.25517 0.95296 0.96482 1.00250 1.69936 1.07199 1.46978 1.29900 0.85650 0.78739 0.78352 0.79709 1.19536 1.20955 1.21031 1.21942 0.99177 0.97937 0.82731 1.22054 0.95940 1.00830 0.97575 0.92320 0.93250 0.91837 0.92320 0.92421 0.75547 0.89033 0.93266 0.88951 0.89931 0.84444 0.75002 0.92630 0.92295 0.95268 0.91855 0.95615 0.95798 0.91830 0.95307 0.93096 0.88790 0.89999 0.87921 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.74 71.98 0.63 -1.27 16 2 C -0.09 -1.13 2.21 -10.80 -0.02 -1.16 16 3 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.08 0.80 6.21 71.98 0.45 1.25 16 5 O -0.60 -7.75 13.19 -148.98 -1.97 -9.71 16 6 C -0.07 -0.94 1.74 -10.77 -0.02 -0.95 16 7 C -0.12 -2.01 5.04 30.67 0.15 -1.86 16 8 C 0.05 0.93 6.27 86.36 0.54 1.47 16 9 N -0.57 -13.53 2.97 -820.48 -2.44 -15.97 16 10 C 0.51 15.55 7.74 87.27 0.68 16.23 16 11 O -0.55 -18.98 15.94 -3.26 -0.05 -19.03 16 12 C 0.50 16.93 7.78 87.27 0.68 17.61 16 13 O -0.53 -18.73 13.10 -3.22 -0.04 -18.77 16 14 N -0.68 -24.51 4.95 -464.42 -2.30 -26.81 16 15 C 0.14 5.83 4.50 86.38 0.39 6.21 16 16 C 0.05 2.24 0.50 -52.93 -0.03 2.22 16 17 C -0.12 -5.57 8.08 71.98 0.58 -4.99 16 18 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 19 C -0.52 -26.93 8.01 25.60 0.21 -26.72 16 20 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 21 C 0.02 1.26 5.15 84.66 0.44 1.70 16 22 N -0.90 -48.26 9.35 21.45 0.20 -48.06 16 23 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 C 0.10 1.81 6.41 86.36 0.55 2.36 16 28 C -0.13 -1.71 5.05 30.67 0.16 -1.55 16 29 H 0.06 0.78 6.40 -2.39 -0.02 0.76 16 30 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.49 6.14 -2.39 -0.01 0.47 16 34 H 0.40 1.60 9.12 -74.05 -0.68 0.92 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.09 1.33 6.36 -2.39 -0.02 1.31 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.14 3.65 3.78 -78.83 -0.30 3.35 16 40 H 0.41 14.76 5.65 -92.71 -0.52 14.23 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 44 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 45 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 3.22 6.07 -2.38 -0.01 3.21 16 48 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 49 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 50 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.08 1.67 7.05 -2.39 -0.02 1.66 16 52 H 0.10 0.90 6.25 -2.39 -0.01 0.88 16 53 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -61.60 400.09 0.83 -60.78 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.56 Total: 27.94 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.96 Total: 5.47 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -4.54 Total: -90.84 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -2.06 Total: -47.51 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -61.60 0.83 -60.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593931001.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.498 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds