Wall clock time and date at job start Wed Apr 1 2020 00:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99753 * 2 1 4 4 C 1.53006 * 109.46904 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46999 * 175.39326 * 4 3 2 6 6 C 1.50697 * 112.85026 * 304.87287 * 5 4 3 7 7 O 1.21279 * 119.99645 * 110.76583 * 6 5 4 8 8 N 1.34778 * 120.00233 * 290.76720 * 6 5 4 9 9 C 1.47152 * 120.98193 * 354.93514 * 8 6 5 10 10 C 1.53294 * 108.38729 * 129.48659 * 9 8 6 11 11 O 1.43056 * 109.25034 * 52.30455 * 10 9 8 12 12 C 1.42962 * 114.10957 * 297.45627 * 11 10 9 13 13 H 1.08997 * 109.51739 * 302.60689 * 12 11 10 14 14 C 1.53000 * 109.51146 * 182.49780 * 12 11 10 15 15 H 1.09002 * 109.47230 * 185.10025 * 14 12 11 16 16 C 1.52998 * 109.47239 * 305.10352 * 14 12 11 17 17 N 1.46500 * 109.46838 * 65.10708 * 14 12 11 18 18 C 1.36940 * 119.99754 * 155.00043 * 17 14 12 19 19 H 1.07997 * 120.00110 * 359.97438 * 18 17 14 20 20 C 1.38819 * 119.99626 * 179.97438 * 18 17 14 21 21 N 1.31614 * 120.00004 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99862 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46882 * 90.00022 * 22 20 18 24 24 H 1.48495 * 109.47287 * 210.00121 * 22 20 18 25 25 H 1.48505 * 109.47205 * 330.00214 * 22 20 18 26 26 C 1.47147 * 120.98084 * 174.95922 * 8 6 5 27 27 C 1.53777 * 113.68906 * 76.14622 * 5 4 3 28 28 C 1.53781 * 87.08144 * 89.12590 * 27 5 4 29 29 C 1.53778 * 87.08388 * 25.43067 * 28 27 5 30 30 H 1.09000 * 109.47261 * 60.00146 * 1 2 3 31 31 H 1.08997 * 109.47310 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47340 * 300.00006 * 1 2 3 33 33 H 1.08996 * 109.47242 * 60.00079 * 3 2 1 34 34 H 1.09000 * 109.47484 * 299.99957 * 3 2 1 35 35 H 1.09001 * 109.47067 * 55.39784 * 4 3 2 36 36 H 1.08996 * 109.47251 * 295.39682 * 4 3 2 37 37 H 1.09001 * 109.68081 * 249.21458 * 9 8 6 38 38 H 1.09002 * 109.67995 * 9.72499 * 9 8 6 39 39 H 1.08996 * 109.50985 * 172.22395 * 10 9 8 40 40 H 1.08999 * 109.51017 * 292.32985 * 10 9 8 41 41 H 1.09004 * 109.46950 * 179.97438 * 16 14 12 42 42 H 1.08996 * 109.47308 * 299.99979 * 16 14 12 43 43 H 1.09004 * 109.47170 * 60.00475 * 16 14 12 44 44 H 0.96996 * 120.00176 * 334.99223 * 17 14 12 45 45 H 0.96997 * 119.99962 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.68404 * 110.79031 * 26 8 6 47 47 H 1.08997 * 109.68457 * 350.23484 * 26 8 6 48 48 H 1.08999 * 113.61148 * 203.67562 * 27 5 4 49 49 H 1.09000 * 113.61532 * 334.57195 * 27 5 4 50 50 H 1.08998 * 113.61062 * 270.87736 * 28 27 5 51 51 H 1.09006 * 113.61245 * 139.98330 * 28 27 5 52 52 H 1.08989 * 113.61607 * 220.01898 * 29 28 27 53 53 H 1.09004 * 113.61386 * 89.11296 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5778 -0.1152 6 6 3.6631 3.3412 -1.3168 7 8 2.9471 4.3088 -1.1679 8 7 4.0166 2.9489 -2.5568 9 6 4.9714 1.8476 -2.7594 10 6 4.3586 0.8529 -3.7519 11 8 3.9407 1.5550 -4.9261 12 6 2.9204 2.5287 -4.6922 13 1 2.0547 2.0471 -4.2377 14 6 2.5107 3.1687 -6.0202 15 1 1.7995 3.9730 -5.8318 16 6 3.7493 3.7360 -6.7165 17 7 1.8883 2.1574 -6.8781 18 6 1.0048 2.5367 -7.8532 19 1 0.7666 3.5812 -7.9896 20 6 0.4154 1.5784 -8.6665 21 7 0.7061 0.3055 -8.5006 22 14 -0.7903 2.0956 -9.9963 23 1 -0.0531 2.3552 -11.2589 24 1 -1.7807 1.0111 -10.2154 25 1 -1.4954 3.3316 -9.5716 26 6 3.4596 3.6094 -3.7479 27 6 4.1086 3.3868 1.1916 28 6 5.4647 2.7524 1.5428 29 6 5.6883 2.5829 0.0309 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8519 0.5741 -0.8450 36 1 3.8625 0.7168 0.9292 37 1 5.9048 2.2406 -3.1624 38 1 5.1630 1.3485 -1.8096 39 1 5.1023 0.1031 -4.0217 40 1 3.4987 0.3645 -3.2937 41 1 3.4575 4.1916 -7.6628 42 1 4.2125 4.4884 -6.0782 43 1 4.4606 2.9317 -6.9050 44 1 2.1020 1.2193 -6.7554 45 1 0.2945 -0.3640 -9.0691 46 1 4.2407 4.1796 -4.2505 47 1 2.6496 4.2764 -3.4528 48 1 4.1572 4.4650 1.0396 49 1 3.3008 3.0886 1.8599 50 1 5.3788 1.8080 2.0802 51 1 6.1625 3.4458 2.0124 52 1 6.1557 1.6357 -0.2379 53 1 6.1687 3.4414 -0.4384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717619930.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:40 Heat of formation + Delta-G solvation = -109.837489 kcal Electronic energy + Delta-G solvation = -32253.687180 eV Core-core repulsion = 28125.962010 eV Total energy + Delta-G solvation = -4127.725170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24832 -40.36301 -38.94307 -38.45962 -37.14952 -35.76545 -34.35540 -32.67632 -31.87469 -30.00455 -29.03577 -27.77715 -26.98505 -26.44335 -25.98383 -24.79955 -24.03346 -23.38190 -21.40638 -20.77246 -19.59881 -19.23826 -18.04653 -17.78180 -17.55541 -17.34469 -17.01874 -16.70994 -16.45146 -16.15944 -16.03484 -15.90876 -15.70190 -15.38415 -15.12705 -14.68093 -14.48420 -14.36155 -14.03289 -13.71040 -13.55794 -13.53390 -13.28496 -13.14397 -12.92177 -12.84340 -12.61785 -12.46956 -12.43294 -12.35312 -12.22803 -12.18239 -12.07690 -11.85160 -11.66350 -11.59848 -11.42864 -11.25668 -11.08938 -10.94775 -10.75104 -10.53072 -9.61276 -9.02351 -7.93285 -5.22283 1.45785 1.47289 1.48248 1.56246 1.80371 2.55501 2.59932 2.76213 3.25530 3.40140 3.45941 3.53527 3.66095 3.81487 3.85449 3.90719 3.94492 3.96509 4.01586 4.12722 4.16827 4.28537 4.32744 4.37675 4.40011 4.41977 4.46859 4.56060 4.59560 4.60033 4.73878 4.76200 4.77547 4.78691 4.81261 4.87918 4.93448 4.98549 5.06576 5.07294 5.14669 5.20297 5.22209 5.29301 5.49682 5.50433 5.59965 6.05793 6.21961 6.27276 6.29901 7.03012 7.34296 8.09352 8.34723 9.30221 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.003095 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.037668 B = 9045.517125 C =10002.278125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.061 3.939 4 C -0.087 4.087 5 C -0.105 4.105 6 C 0.525 3.475 7 O -0.582 6.582 8 N -0.610 5.610 9 C 0.071 3.929 10 C 0.036 3.964 11 O -0.380 6.380 12 C 0.094 3.906 13 H 0.033 0.967 14 C 0.176 3.824 15 H 0.055 0.945 16 C -0.147 4.147 17 N -0.732 5.732 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.270 1.270 26 C 0.092 3.908 27 C -0.119 4.119 28 C -0.125 4.125 29 C -0.119 4.119 30 H 0.029 0.971 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.375 0.625 45 H 0.250 0.750 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.083 0.917 52 H 0.105 0.895 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.886 1.663 24.186 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.015 4.015 4 C -0.124 4.124 5 C -0.109 4.109 6 C 0.315 3.685 7 O -0.462 6.462 8 N -0.343 5.343 9 C -0.050 4.050 10 C -0.041 4.041 11 O -0.298 6.298 12 C 0.034 3.966 13 H 0.052 0.948 14 C 0.067 3.933 15 H 0.073 0.927 16 C -0.206 4.206 17 N -0.373 5.373 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.195 1.195 26 C -0.031 4.031 27 C -0.157 4.157 28 C -0.162 4.162 29 C -0.156 4.156 30 H 0.048 0.952 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.122 0.878 51 H 0.102 0.898 52 H 0.123 0.877 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.580 2.094 23.983 27.163 hybrid contribution -1.547 0.180 -1.087 1.900 sum 11.032 2.274 22.896 25.517 Atomic orbital electron populations 1.22898 0.79889 1.03971 1.00260 1.87793 1.21032 1.28032 1.95483 1.22505 0.95154 0.84390 0.99491 1.21355 0.91833 0.93476 1.05711 1.22196 0.99829 0.95974 0.92855 1.21146 0.78980 0.83905 0.84470 1.90662 1.39611 1.29692 1.86211 1.48243 1.45101 1.35815 1.05101 1.22881 0.92222 0.87705 1.02239 1.23240 0.99901 0.94559 0.86396 1.88075 1.55971 1.53202 1.32588 1.22505 0.89303 0.89244 0.95540 0.94849 1.20420 0.93708 0.91036 0.88140 0.92689 1.22198 0.98260 1.00134 1.00046 1.42522 1.51117 1.05383 1.38249 1.19643 1.16256 0.92931 1.08426 0.90615 1.25556 1.03190 0.95385 1.02676 1.69839 1.48775 1.00370 1.42937 0.85157 0.78445 0.76980 0.79291 1.21378 1.22242 1.19466 1.22200 1.00209 0.95126 0.85611 1.22884 0.99753 0.99226 0.93854 1.22837 0.95640 1.02194 0.95533 1.23109 0.90385 1.04221 0.97902 0.95219 0.87885 0.92595 0.92359 0.96504 0.89735 0.86940 0.88602 0.85555 0.85217 0.93914 0.94400 0.91192 0.93377 0.79273 0.94096 0.88973 0.89956 0.90889 0.90658 0.87795 0.89845 0.87701 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -9.69 10.70 -148.98 -1.59 -11.29 16 3 C 0.06 1.37 5.66 71.98 0.41 1.78 16 4 C -0.09 -1.38 4.67 30.60 0.14 -1.24 16 5 C -0.11 -1.76 0.30 -52.40 -0.02 -1.78 16 6 C 0.52 13.50 5.34 87.66 0.47 13.97 16 7 O -0.58 -19.79 15.74 -3.03 -0.05 -19.84 16 8 N -0.61 -15.12 3.02 -817.35 -2.47 -17.59 16 9 C 0.07 1.28 5.51 86.35 0.48 1.76 16 10 C 0.04 0.86 6.99 72.08 0.50 1.36 16 11 O -0.38 -12.92 9.25 -148.98 -1.38 -14.30 16 12 C 0.09 3.33 2.60 30.70 0.08 3.41 16 13 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 14 C 0.18 7.29 2.77 44.99 0.12 7.41 16 15 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 16 C -0.15 -5.40 9.06 71.98 0.65 -4.75 16 17 N -0.73 -38.67 5.10 -322.93 -1.65 -40.31 16 18 C -0.24 -13.77 9.93 84.03 0.83 -12.93 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 21 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 22 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.09 2.73 5.81 86.36 0.50 3.23 16 27 C -0.12 -1.84 6.79 31.12 0.21 -1.63 16 28 C -0.12 -1.09 7.73 31.12 0.24 -0.84 16 29 C -0.12 -1.22 5.64 31.12 0.18 -1.04 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.20 7.59 -2.39 -0.02 1.18 16 34 H 0.02 0.48 7.10 -2.39 -0.02 0.46 16 35 H 0.08 1.33 6.21 -2.39 -0.01 1.31 16 36 H 0.11 1.26 7.31 -2.39 -0.02 1.24 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.13 1.53 3.14 -2.39 -0.01 1.52 16 39 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.07 2.06 6.42 -2.39 -0.02 2.05 16 43 H 0.05 1.85 7.56 -2.38 -0.02 1.84 16 44 H 0.38 21.59 7.58 -92.71 -0.70 20.89 16 45 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.09 2.50 6.27 -2.39 -0.01 2.48 16 47 H 0.08 2.70 7.12 -2.39 -0.02 2.68 16 48 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 49 H 0.07 1.12 7.55 -2.39 -0.02 1.10 16 50 H 0.10 0.58 7.61 -2.39 -0.02 0.56 16 51 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 52 H 0.10 0.59 7.11 -2.39 -0.02 0.58 16 53 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 Total: -1.00 -75.78 405.03 1.89 -73.89 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.20 Total: 34.28 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.52 Total: 6.48 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -3.83 Total: -118.48 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -3.02 Total: -45.42 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -75.78 1.89 -73.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717619930.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.946 kcal (2) G-P(sol) polarization free energy of solvation -75.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds