Wall clock time and date at job start Wed Apr 1 2020 00:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46488 * 109.47039 * 2 1 4 4 C 1.46502 * 120.00229 * 269.99767 * 3 2 1 5 5 C 1.50697 * 109.47399 * 270.00246 * 4 3 2 6 6 H 1.08002 * 119.99936 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00561 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00861 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99579 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46803 * 90.00201 * 9 7 5 11 11 H 1.48501 * 109.47120 * 210.00110 * 9 7 5 12 12 H 1.48493 * 109.47073 * 330.00092 * 9 7 5 13 13 C 1.34782 * 120.00192 * 90.00244 * 3 2 1 14 14 O 1.21277 * 120.00033 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99827 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47304 * 180.02562 * 15 13 3 17 17 C 1.47013 * 110.99701 * 72.56150 * 16 15 13 18 18 C 1.53104 * 109.25634 * 182.39361 * 17 16 15 19 19 O 1.43019 * 109.25751 * 303.15382 * 18 17 16 20 20 C 1.43019 * 113.73605 * 58.66867 * 19 18 17 21 21 C 1.47010 * 110.99964 * 196.19854 * 16 15 13 22 22 H 1.09000 * 109.50809 * 297.58429 * 21 16 15 23 23 C 1.53003 * 109.50513 * 57.67603 * 21 16 15 24 24 C 1.52998 * 109.47564 * 60.49778 * 23 21 16 25 25 H 1.08998 * 110.35247 * 53.67537 * 24 23 21 26 26 C 1.54946 * 110.31166 * 175.82615 * 24 23 21 27 27 C 1.55304 * 100.97839 * 155.33536 * 26 24 23 28 28 C 1.54434 * 102.23304 * 325.92017 * 27 26 24 29 29 O 1.43246 * 107.60459 * 21.29615 * 28 27 26 30 30 H 1.08998 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46731 * 300.00050 * 1 2 3 32 32 H 1.09005 * 109.46849 * 59.99738 * 1 2 3 33 33 H 1.09003 * 109.46677 * 239.99574 * 2 1 3 34 34 H 1.08997 * 109.46615 * 120.00407 * 2 1 3 35 35 H 1.09000 * 109.47109 * 30.00541 * 4 3 2 36 36 H 1.09001 * 109.47079 * 150.00430 * 4 3 2 37 37 H 0.96993 * 120.00632 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.46850 * 59.99629 * 15 13 3 39 39 H 1.09001 * 109.47236 * 300.00502 * 15 13 3 40 40 H 1.08992 * 109.51291 * 302.32692 * 17 16 15 41 41 H 1.09003 * 109.50567 * 62.41988 * 17 16 15 42 42 H 1.08999 * 109.50334 * 63.08664 * 18 17 16 43 43 H 1.08993 * 109.50497 * 183.17632 * 18 17 16 44 44 H 1.09004 * 109.50395 * 181.39487 * 20 19 18 45 45 H 1.08995 * 109.50539 * 61.26728 * 20 19 18 46 46 H 1.09002 * 109.47075 * 300.49418 * 23 21 16 47 47 H 1.09004 * 109.46786 * 180.49970 * 23 21 16 48 48 H 1.08995 * 111.11916 * 273.27819 * 26 24 23 49 49 H 1.08992 * 111.12268 * 37.39946 * 26 24 23 50 50 H 1.08998 * 110.84424 * 84.07940 * 27 26 24 51 51 H 1.08999 * 110.84972 * 207.69563 * 27 26 24 52 52 H 1.08998 * 109.79099 * 261.79969 * 28 27 26 53 53 H 1.08999 * 109.92815 * 140.86921 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2579 9 14 3.0129 3.4352 -3.9292 10 1 3.1165 4.8554 -3.5080 11 1 3.4058 3.3120 -5.3560 12 1 1.6132 2.9693 -3.7592 13 6 2.2431 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3091 2.2064 3.5889 17 6 1.2928 3.2603 3.7215 18 6 1.6932 4.2080 4.8554 19 8 1.8558 3.4577 6.0620 20 6 2.8386 2.4229 5.9685 21 6 2.4498 1.4572 4.8459 22 1 1.5030 0.9758 5.0907 23 6 3.5380 0.3933 4.6876 24 6 4.8697 1.0709 4.3585 25 1 5.1000 1.8349 5.1009 26 6 6.0070 0.0203 4.2971 27 6 7.0228 0.7381 3.3670 28 6 6.0952 1.5083 2.4020 29 8 4.8230 1.6503 3.0449 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5818 1.6877 -2.0284 36 1 2.0957 3.1410 -1.1383 37 1 5.7170 2.5724 -4.0841 38 1 2.6212 0.4185 2.5302 39 1 0.9433 1.0124 2.5299 40 1 1.2235 3.8187 2.7880 41 1 0.3272 2.8083 3.9480 42 1 2.6325 4.7004 4.6036 43 1 0.9148 4.9582 4.9946 44 1 2.8883 1.8816 6.9133 45 1 3.8111 2.8635 5.7491 46 1 3.2668 -0.2864 3.8798 47 1 3.6357 -0.1676 5.6171 48 1 6.4339 -0.1544 5.2846 49 1 5.6575 -0.9113 3.8524 50 1 7.6492 1.4262 3.9346 51 1 7.6318 0.0141 2.8257 52 1 5.9802 0.9476 1.4744 53 1 6.5141 2.4920 2.1900 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933674978.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:17 Heat of formation + Delta-G solvation = -125.699701 kcal Electronic energy + Delta-G solvation = -33286.250202 eV Core-core repulsion = 29157.837195 eV Total energy + Delta-G solvation = -4128.413007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40519 -40.29043 -39.69868 -37.04429 -36.55601 -34.82805 -34.15562 -32.81947 -31.92718 -30.83217 -30.27912 -29.05914 -27.11001 -26.06635 -24.37261 -23.99104 -23.60041 -22.47707 -22.36150 -20.40632 -19.76387 -19.07292 -18.29349 -17.63078 -17.47184 -16.99355 -16.88506 -16.77254 -16.34591 -15.94498 -15.90610 -15.63699 -15.47476 -15.05568 -14.78502 -14.62907 -14.48980 -14.29254 -14.17193 -13.82963 -13.74668 -13.55969 -13.32316 -13.13551 -12.94379 -12.74875 -12.54966 -12.53731 -12.40444 -12.37721 -12.14306 -12.02318 -11.95104 -11.88684 -11.70973 -11.63252 -11.51235 -11.35681 -10.81528 -10.67194 -10.35284 -10.12507 -9.31267 -9.05887 -8.32009 -6.35024 1.30122 1.34587 1.42546 2.00201 2.28659 2.31081 2.84618 2.99917 3.02505 3.11823 3.62252 3.69474 3.77940 3.92844 3.99199 4.04447 4.07371 4.16165 4.18849 4.23588 4.30079 4.32685 4.40862 4.42062 4.48219 4.55000 4.63210 4.73129 4.76536 4.80754 4.82325 4.85251 4.89554 4.90899 4.92152 4.94369 4.96490 4.99349 5.00685 5.05114 5.13262 5.18101 5.36205 5.37117 5.49837 5.73808 6.00960 6.10762 6.24144 6.30659 6.44160 6.65599 6.86983 7.25886 7.65069 8.85073 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.004383 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.896351 B = 6387.049077 C = 7408.472398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 N -0.609 5.609 4 C 0.230 3.770 5 C -0.524 4.524 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.944 3.056 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.241 1.241 13 C 0.510 3.490 14 O -0.569 6.569 15 C 0.063 3.937 16 N -0.513 5.513 17 C 0.024 3.976 18 C 0.074 3.926 19 O -0.396 6.396 20 C 0.066 3.934 21 C 0.053 3.947 22 H 0.060 0.940 23 C -0.111 4.111 24 C 0.073 3.927 25 H 0.069 0.931 26 C -0.141 4.141 27 C -0.145 4.145 28 C 0.048 3.952 29 O -0.362 6.362 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.012 0.988 37 H 0.266 0.734 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.030 0.970 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 -8.205 20.639 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 N -0.342 5.342 4 C 0.108 3.892 5 C -0.563 4.563 6 H 0.045 0.955 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.767 3.233 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.164 1.164 13 C 0.298 3.702 14 O -0.447 6.447 15 C -0.067 4.067 16 N -0.238 5.238 17 C -0.104 4.104 18 C -0.003 4.003 19 O -0.314 6.314 20 C -0.011 4.011 21 C -0.055 4.055 22 H 0.078 0.922 23 C -0.148 4.148 24 C 0.016 3.984 25 H 0.086 0.914 26 C -0.178 4.178 27 C -0.183 4.183 28 C -0.030 4.030 29 O -0.281 6.281 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.139 0.861 48 H 0.127 0.873 49 H 0.098 0.902 50 H 0.102 0.898 51 H 0.102 0.898 52 H 0.049 0.951 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.200 -7.218 20.480 22.878 hybrid contribution 0.002 0.365 -1.528 1.571 sum -7.199 -6.854 18.952 21.400 Atomic orbital electron populations 1.22146 0.94142 1.03519 1.01826 1.21665 0.95427 0.81611 1.03377 1.48048 1.65287 1.15015 1.05821 1.19180 0.94656 0.92667 0.82716 1.21521 0.96968 1.31554 1.06253 0.95502 1.25788 0.96620 0.97216 0.98948 1.70045 1.17331 1.46820 1.24418 0.85771 0.80551 0.79024 0.77914 1.20510 1.19924 1.16377 1.21011 0.76694 0.86642 0.85823 1.90594 1.46083 1.20493 1.87565 1.21837 1.00701 0.95990 0.88211 1.61601 1.46661 1.12634 1.02941 1.22742 0.92928 0.94844 0.99919 1.22564 1.01331 0.93200 0.83229 1.87916 1.60469 1.48281 1.34747 1.22951 0.91168 0.88183 0.98789 1.22381 0.98974 0.94699 0.89479 0.92197 1.21926 0.92451 0.96530 1.03886 1.23156 0.95387 0.94042 0.85802 0.91352 1.23317 0.94879 0.98382 1.01263 1.23071 0.98205 0.99632 0.97392 1.22928 0.85603 0.98439 0.95986 1.88823 1.30132 1.80416 1.28714 0.88735 0.92455 0.93501 0.91223 0.89400 0.93946 0.96995 0.92462 0.87058 0.91078 0.91602 0.93720 0.94016 0.86923 0.85542 0.93061 0.90971 0.86082 0.87286 0.90211 0.89795 0.89813 0.95147 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 10.24 71.99 0.74 -2.95 16 2 C 0.10 3.14 5.93 86.38 0.51 3.65 16 3 N -0.61 -25.77 2.46 -826.16 -2.03 -27.79 16 4 C 0.23 11.71 4.23 85.63 0.36 12.07 16 5 C -0.52 -31.80 9.94 25.60 0.25 -31.55 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.72 5.47 84.65 0.46 1.18 16 8 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 9 Si 0.94 46.05 27.47 68.60 1.88 47.93 16 10 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 13 C 0.51 21.66 7.37 87.66 0.65 22.31 16 14 O -0.57 -29.88 14.46 -3.02 -0.04 -29.92 16 15 C 0.06 1.92 2.97 85.56 0.25 2.18 16 16 N -0.51 -15.12 2.77 -874.54 -2.42 -17.54 16 17 C 0.02 0.69 5.31 86.32 0.46 1.15 16 18 C 0.07 1.92 7.01 72.02 0.50 2.43 16 19 O -0.40 -9.71 10.83 -148.98 -1.61 -11.32 16 20 C 0.07 1.32 6.03 72.01 0.43 1.75 16 21 C 0.05 1.11 2.28 44.93 0.10 1.21 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 C -0.11 -1.93 4.50 30.59 0.14 -1.79 16 24 C 0.07 1.67 3.16 31.26 0.10 1.77 16 25 H 0.07 1.51 6.10 -2.39 -0.01 1.50 16 26 C -0.14 -2.57 6.57 32.05 0.21 -2.35 16 27 C -0.15 -3.46 7.02 31.87 0.22 -3.23 16 28 C 0.05 1.72 7.80 72.47 0.56 2.28 16 29 O -0.36 -12.75 8.38 -148.98 -1.25 -14.00 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 32 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 34 H 0.09 2.25 6.44 -2.39 -0.02 2.24 16 35 H 0.04 2.00 7.13 -2.39 -0.02 1.98 16 36 H 0.01 0.66 6.85 -2.39 -0.02 0.64 16 37 H 0.27 16.02 8.31 -92.71 -0.77 15.24 16 38 H 0.11 3.18 4.49 -2.39 -0.01 3.17 16 39 H 0.07 1.80 7.09 -2.39 -0.02 1.78 16 40 H 0.07 2.36 6.45 -2.39 -0.02 2.34 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.05 1.18 6.14 -2.39 -0.01 1.16 16 46 H 0.07 1.35 6.03 -2.39 -0.01 1.33 16 47 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.08 1.41 8.05 -2.39 -0.02 1.39 16 50 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -82.91 399.14 1.62 -81.29 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.83 Total: 21.99 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.96 Total: 10.11 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.15 Total: -106.08 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -2.91 Total: -55.24 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Total: -82.91 1.62 -81.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933674978.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.414 kcal (2) G-P(sol) polarization free energy of solvation -82.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds