Wall clock time and date at job start Tue Mar 31 2020 23:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.53000 * 109.47275 * 119.99701 * 2 1 3 5 5 H 1.09000 * 109.47015 * 184.99899 * 4 2 1 6 6 F 1.39893 * 109.47569 * 305.00684 * 4 2 1 7 7 C 1.50708 * 109.46823 * 65.00496 * 4 2 1 8 8 O 1.21284 * 119.99601 * 313.84020 * 7 4 2 9 9 N 1.34771 * 120.00008 * 133.83590 * 7 4 2 10 10 C 1.46931 * 120.63179 * 174.89865 * 9 7 4 11 11 C 1.53189 * 108.77629 * 233.63544 * 10 9 7 12 12 C 1.53041 * 109.31207 * 305.36204 * 11 10 9 13 13 C 1.53350 * 109.60894 * 61.37708 * 12 11 10 14 14 H 1.08999 * 109.47123 * 58.54413 * 13 12 11 15 15 C 1.52991 * 109.68629 * 178.74538 * 13 12 11 16 16 C 1.53037 * 109.46027 * 299.81934 * 15 13 12 17 17 C 1.53195 * 109.31219 * 178.61418 * 16 15 13 18 18 N 1.46928 * 108.77561 * 54.63520 * 17 16 15 19 19 C 1.36933 * 120.63002 * 126.37217 * 18 17 16 20 20 H 1.08007 * 120.00060 * 323.46251 * 19 18 17 21 21 C 1.38815 * 120.00288 * 143.46638 * 19 18 17 22 22 N 1.31618 * 119.99777 * 358.41365 * 21 19 18 23 23 Si 1.86798 * 120.00088 * 178.41386 * 21 19 18 24 24 H 1.48505 * 109.47332 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46920 * 120.00046 * 23 21 19 26 26 H 1.48491 * 109.47376 * 239.99735 * 23 21 19 27 27 C 1.46924 * 118.73705 * 306.39062 * 18 17 16 28 28 C 1.53043 * 109.46298 * 179.75074 * 15 13 12 29 29 C 1.46928 * 120.63193 * 354.92951 * 9 7 4 30 30 H 1.09004 * 109.46411 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47058 * 299.99365 * 1 2 3 32 32 H 1.09000 * 109.47005 * 59.99979 * 1 2 3 33 33 H 1.08995 * 109.47508 * 240.00452 * 2 1 3 34 34 H 1.08996 * 109.47280 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46955 * 300.00494 * 3 2 1 36 36 H 1.09008 * 109.46630 * 60.00199 * 3 2 1 37 37 H 1.09007 * 109.58174 * 353.42130 * 10 9 7 38 38 H 1.08998 * 109.58278 * 113.70068 * 10 9 7 39 39 H 1.08998 * 109.50142 * 65.31700 * 11 10 9 40 40 H 1.09003 * 109.49446 * 185.41233 * 11 10 9 41 41 H 1.09003 * 109.45890 * 181.38964 * 12 11 10 42 42 H 1.09000 * 109.46216 * 301.36219 * 12 11 10 43 43 H 1.09004 * 109.45923 * 59.77950 * 15 13 12 44 44 H 1.08995 * 109.50019 * 298.55895 * 16 15 13 45 45 H 1.08999 * 109.49651 * 58.66659 * 16 15 13 46 46 H 1.09001 * 109.58796 * 294.84957 * 17 16 15 47 47 H 1.08998 * 109.70313 * 174.49406 * 17 16 15 48 48 H 0.96995 * 119.99859 * 180.02562 * 22 21 19 49 49 H 1.08995 * 109.59094 * 293.81961 * 27 18 17 50 50 H 1.09008 * 109.58584 * 173.39554 * 27 18 17 51 51 H 1.09002 * 109.49485 * 301.34148 * 28 15 13 52 52 H 1.09001 * 109.49381 * 61.39762 * 28 15 13 53 53 H 1.09001 * 109.57896 * 246.15333 * 29 9 7 54 54 H 1.09001 * 109.58896 * 6.43035 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1264 -0.6443 1.2951 6 9 1.4822 -0.1315 2.3886 7 6 1.6415 -2.1733 1.1889 8 8 0.5084 -2.4789 0.8825 9 7 2.5440 -3.1323 1.4752 10 6 2.1436 -4.5450 1.5297 11 6 2.5759 -5.1283 2.8787 12 6 4.0751 -4.8920 3.0752 13 6 4.3615 -3.3855 3.0865 14 1 3.7910 -2.9132 3.8862 15 6 5.8554 -3.1466 3.3142 16 6 6.2688 -3.7482 4.6592 17 6 7.7718 -3.5375 4.8679 18 7 8.0724 -2.1061 4.7292 19 6 8.7446 -1.4355 5.7159 20 1 8.5652 -1.6786 6.7528 21 6 9.6567 -0.4432 5.3835 22 7 9.8984 -0.1683 4.1192 23 14 10.5408 0.5020 6.7305 24 1 10.0960 0.0053 8.0575 25 1 12.0062 0.3037 6.5941 26 1 10.2237 1.9477 6.6107 27 6 7.6378 -1.4077 3.5118 28 6 6.1364 -1.6422 3.3183 29 6 3.9470 -2.7851 1.7395 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.0610 -4.6220 1.4283 38 1 2.6263 -5.0930 0.7206 39 1 2.0223 -4.6398 3.6805 40 1 2.3712 -6.1988 2.8944 41 1 4.3902 -5.3279 4.0233 42 1 4.6265 -5.3596 2.2595 43 1 6.4249 -3.6201 2.5144 44 1 5.7179 -3.2578 5.4618 45 1 6.0469 -4.8153 4.6641 46 1 8.3273 -4.1018 4.1189 47 1 8.0553 -3.8755 5.8646 48 1 10.5360 0.5248 3.8870 49 1 8.1824 -1.7983 2.6522 50 1 7.8306 -0.3398 3.6146 51 1 5.8201 -1.2104 2.3688 52 1 5.5861 -1.1716 4.1331 53 1 4.5787 -3.1902 0.9490 54 1 4.0549 -1.7010 1.7739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047247708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:02 Heat of formation + Delta-G solvation = -97.143421 kcal Electronic energy + Delta-G solvation = -31977.105473 eV Core-core repulsion = 27862.303549 eV Total energy + Delta-G solvation = -4114.801924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.227 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.00658 -41.44534 -39.84187 -38.15811 -36.30412 -35.49959 -33.93117 -33.14252 -31.46189 -30.58418 -29.08173 -28.06202 -26.99298 -26.29993 -24.59226 -23.66794 -22.71177 -21.79358 -21.09396 -20.67095 -20.12570 -18.95057 -18.61468 -17.92720 -17.01576 -16.85301 -16.67371 -15.89640 -15.88989 -15.60449 -15.43519 -15.21516 -15.01564 -14.77919 -14.70076 -14.50818 -14.29810 -14.07433 -13.87666 -13.83563 -13.79405 -13.47202 -13.15752 -13.02339 -12.93410 -12.80667 -12.68684 -12.53398 -12.30638 -12.22570 -12.04690 -11.96320 -11.90022 -11.79610 -11.73297 -11.61989 -11.46666 -11.30265 -10.98698 -10.81494 -10.50991 -10.44711 -9.72232 -8.48612 -7.84554 -5.40869 1.23237 1.45496 1.47353 1.57142 1.75583 2.50740 3.07693 3.30787 3.37111 3.43565 3.69227 3.75590 3.78671 3.81122 3.94958 4.05931 4.21078 4.23325 4.26214 4.33386 4.38105 4.45766 4.53348 4.57389 4.59259 4.66979 4.76889 4.80290 4.82004 4.83815 4.91105 4.94577 4.95705 4.99855 5.03256 5.08589 5.09779 5.11446 5.16582 5.34418 5.35564 5.36210 5.40725 5.44376 5.46649 5.53140 5.56302 5.63675 5.72259 5.90025 6.17421 6.48392 6.89358 7.22074 7.91394 8.44707 9.19572 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003128 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.741663 B = 8947.981153 C =10641.603000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C -0.148 4.148 4 C 0.071 3.929 5 H 0.124 0.876 6 F -0.201 7.201 7 C 0.493 3.507 8 O -0.551 6.551 9 N -0.598 5.598 10 C 0.107 3.893 11 C -0.126 4.126 12 C -0.113 4.113 13 C -0.086 4.086 14 H 0.059 0.941 15 C -0.060 4.060 16 C -0.115 4.115 17 C 0.140 3.860 18 N -0.614 5.614 19 C -0.265 4.265 20 H 0.057 0.943 21 C -0.043 4.043 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.179 3.821 28 C -0.127 4.127 29 C 0.100 3.900 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.084 0.916 46 H 0.014 0.986 47 H 0.045 0.955 48 H 0.250 0.750 49 H -0.003 1.003 50 H 0.048 0.952 51 H 0.072 0.928 52 H 0.041 0.959 53 H 0.095 0.905 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 -6.832 -9.609 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.127 4.127 3 C -0.206 4.206 4 C 0.032 3.968 5 H 0.141 0.859 6 F -0.182 7.182 7 C 0.279 3.721 8 O -0.429 6.429 9 N -0.329 5.329 10 C -0.015 4.015 11 C -0.164 4.164 12 C -0.151 4.151 13 C -0.105 4.105 14 H 0.077 0.923 15 C -0.079 4.079 16 C -0.154 4.154 17 C 0.015 3.985 18 N -0.338 5.338 19 C -0.396 4.396 20 H 0.075 0.925 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.792 3.208 24 H -0.193 1.193 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.053 3.947 28 C -0.166 4.166 29 C -0.021 4.021 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.032 0.968 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.015 0.985 50 H 0.066 0.934 51 H 0.091 0.909 52 H 0.060 0.940 53 H 0.113 0.887 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.638 -6.889 -9.789 20.497 hybrid contribution 0.850 0.894 0.992 1.583 sum -15.788 -5.996 -8.797 19.042 Atomic orbital electron populations 1.22041 0.94127 1.03784 1.01797 1.21596 0.97817 0.97776 0.95476 1.21863 1.01818 0.93862 1.03008 1.22061 1.00837 0.88970 0.84946 0.85906 1.92834 1.87870 1.84656 1.52860 1.21175 0.85171 0.88621 0.77122 1.90593 1.20842 1.83280 1.48233 1.48311 1.09771 1.07523 1.67335 1.21794 1.01331 0.79550 0.98815 1.21872 0.96395 1.02127 0.96040 1.21682 0.95616 0.94400 1.03380 1.21494 0.95350 0.97265 0.96415 0.92258 1.20904 0.94286 0.95142 0.97608 1.21945 0.95951 1.00637 0.96854 1.21079 0.94537 0.84698 0.98221 1.44245 1.65548 1.04706 1.19282 1.19450 1.15556 1.16496 0.88109 0.92499 1.26012 0.97945 1.01997 0.97897 1.70098 1.36871 1.33874 1.16853 0.85259 0.78113 0.77962 0.79462 1.19314 1.21685 1.21631 1.20581 0.90541 0.96808 0.86744 1.22141 0.97487 0.96498 1.00459 1.22215 0.80161 1.01617 0.98129 0.90989 0.93642 0.91181 0.88215 0.91280 0.90355 0.92863 0.90316 0.89354 0.92982 0.88447 0.90707 0.90346 0.91026 0.93666 0.89759 0.96777 0.93635 0.94090 0.98515 0.93363 0.90944 0.94014 0.88683 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.70 71.98 0.63 -2.74 16 2 C -0.11 -2.00 2.75 -10.79 -0.03 -2.03 16 3 C -0.15 -2.37 9.11 71.98 0.66 -1.71 16 4 C 0.07 1.53 3.13 29.85 0.09 1.62 16 5 H 0.12 2.19 5.26 -2.39 -0.01 2.18 16 6 F -0.20 -5.44 16.03 44.97 0.72 -4.72 16 7 C 0.49 11.88 7.01 87.66 0.61 12.49 16 8 O -0.55 -16.17 13.26 -3.04 -0.04 -16.21 16 9 N -0.60 -12.05 2.97 -818.88 -2.43 -14.48 16 10 C 0.11 1.84 6.42 86.36 0.55 2.39 16 11 C -0.13 -1.95 6.08 30.67 0.19 -1.76 16 12 C -0.11 -1.88 4.87 30.73 0.15 -1.73 16 13 C -0.09 -1.79 1.93 -10.62 -0.02 -1.81 16 14 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 15 C -0.06 -1.62 1.74 -10.77 -0.02 -1.64 16 16 C -0.12 -3.46 5.05 30.67 0.16 -3.30 16 17 C 0.14 5.57 6.52 86.36 0.56 6.13 16 18 N -0.61 -30.25 2.98 -699.10 -2.08 -32.33 16 19 C -0.27 -14.59 9.54 84.03 0.80 -13.78 16 20 H 0.06 3.10 7.83 -2.91 -0.02 3.08 16 21 C -0.04 -2.36 5.21 84.86 0.44 -1.92 16 22 N -0.93 -54.17 10.96 21.65 0.24 -53.93 16 23 Si 0.96 44.61 29.55 68.60 2.03 46.64 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 27 C 0.18 8.24 5.22 86.36 0.45 8.69 16 28 C -0.13 -4.25 5.05 30.67 0.15 -4.09 16 29 C 0.10 1.85 5.09 86.36 0.44 2.29 16 30 H 0.07 1.82 5.27 -2.38 -0.01 1.81 16 31 H 0.04 1.03 7.68 -2.39 -0.02 1.02 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.96 7.94 -2.38 -0.02 0.94 16 37 H 0.08 1.58 7.04 -2.38 -0.02 1.56 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.25 6.36 -2.39 -0.02 1.24 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 2.01 6.35 -2.39 -0.02 1.99 16 46 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 48 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.05 2.58 6.22 -2.38 -0.01 2.57 16 51 H 0.07 2.01 6.49 -2.39 -0.02 1.99 16 52 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 54 H 0.09 1.67 3.68 -2.39 -0.01 1.66 16 Total: -1.00 -67.27 399.00 5.12 -62.16 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.87 Total: 15.78 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.82 Total: -2.90 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.28 Total: -100.74 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.04 Total: -16.21 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.72 Total: -4.72 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.27 5.12 -62.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047247708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.988 kcal (2) G-P(sol) polarization free energy of solvation -67.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds