Wall clock time and date at job start Tue Mar 31 2020 23:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47090 * 2 1 4 4 H 1.09004 * 109.88397 * 54.86809 * 3 2 1 5 5 C 1.54315 * 109.89071 * 293.66574 * 3 2 1 6 6 H 1.09002 * 110.70524 * 336.69926 * 5 3 2 7 7 C 1.50704 * 110.70604 * 99.92992 * 5 3 2 8 8 O 1.21284 * 119.99995 * 359.97438 * 7 5 3 9 9 N 1.34774 * 120.00145 * 180.02562 * 7 5 3 10 10 C 1.46500 * 120.00004 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46939 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46968 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99598 * 66.04897 * 12 11 10 14 14 C 1.46897 * 110.99901 * 189.99880 * 12 11 10 15 15 C 1.50700 * 109.46884 * 170.00367 * 14 12 11 16 16 O 1.21298 * 120.00234 * 359.97438 * 15 14 12 17 17 N 1.34777 * 120.00051 * 180.02562 * 15 14 12 18 18 C 1.37095 * 120.00427 * 180.02562 * 17 15 14 19 19 H 1.08010 * 119.99723 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00434 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99972 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99774 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47392 * 90.00290 * 22 20 18 24 24 H 1.48498 * 109.47092 * 210.00363 * 22 20 18 25 25 H 1.48498 * 109.47128 * 330.00093 * 22 20 18 26 26 C 1.55140 * 103.02228 * 218.31267 * 5 3 2 27 27 C 1.54902 * 101.65198 * 35.65209 * 26 5 3 28 28 N 1.47451 * 109.88680 * 175.89749 * 3 2 1 29 29 C 1.46887 * 110.99940 * 356.14954 * 28 3 2 30 30 H 1.09002 * 109.47844 * 185.58821 * 1 2 3 31 31 H 1.09002 * 109.47540 * 305.59050 * 1 2 3 32 32 H 1.09008 * 109.47146 * 65.59016 * 1 2 3 33 33 H 1.08994 * 109.46614 * 120.00240 * 2 1 3 34 34 H 1.09001 * 109.47281 * 239.99711 * 2 1 3 35 35 H 0.97002 * 120.00365 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.47241 * 299.99177 * 10 9 7 37 37 H 1.08996 * 109.47212 * 59.99799 * 10 9 7 38 38 H 1.08998 * 109.47515 * 299.99472 * 11 10 9 39 39 H 1.09000 * 109.47407 * 60.00118 * 11 10 9 40 40 H 1.09002 * 109.47728 * 60.00280 * 13 12 11 41 41 H 1.09002 * 109.47376 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47475 * 299.99837 * 13 12 11 43 43 H 1.08995 * 109.47373 * 290.00221 * 14 12 11 44 44 H 1.08999 * 109.47129 * 50.00699 * 14 12 11 45 45 H 0.97001 * 120.00288 * 359.97438 * 17 15 14 46 46 H 0.97001 * 119.99873 * 179.97438 * 21 20 18 47 47 H 1.09004 * 110.98890 * 277.56178 * 26 5 3 48 48 H 1.08997 * 111.02364 * 153.76070 * 26 5 3 49 49 H 1.09005 * 110.37666 * 204.10125 * 27 26 5 50 50 H 1.08997 * 110.46491 * 81.81104 * 27 26 5 51 51 H 1.09004 * 109.47929 * 58.25803 * 29 28 3 52 52 H 1.09002 * 109.47360 * 178.26235 * 29 28 3 53 53 H 1.09004 * 109.47529 * 298.26004 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6074 1.9886 0.8383 5 6 1.6658 2.1316 -1.3291 6 1 1.5065 1.3930 -2.1147 7 6 0.4450 2.9979 -1.1549 8 8 -0.0958 3.0729 -0.0719 9 7 -0.0463 3.6885 -2.2027 10 6 -1.2327 4.5311 -2.0332 11 6 -1.5781 5.1995 -3.3655 12 7 -2.7682 6.0439 -3.1957 13 6 -2.4881 7.1741 -2.3000 14 6 -3.2704 6.5131 -4.4940 15 6 -4.6166 7.1639 -4.3064 16 8 -5.1094 7.2300 -3.2000 17 7 -5.2735 7.6717 -5.3681 18 6 -6.4979 8.2642 -5.1974 19 1 -6.9363 8.3238 -4.2121 20 6 -7.1754 8.7872 -6.2920 21 7 -8.3492 9.3548 -6.1284 22 14 -6.4174 8.6835 -7.9961 23 1 -6.8424 7.4202 -8.6510 24 1 -6.8702 9.8398 -8.8105 25 1 -4.9370 8.7081 -7.8818 26 6 2.9146 2.9991 -1.6367 27 6 4.0595 2.0955 -1.1149 28 7 3.5111 1.4543 0.0992 29 6 4.0388 0.0930 0.2598 30 1 -0.3635 -1.0227 0.1001 31 1 -0.3634 0.5981 0.8357 32 1 -0.3634 0.4247 -0.9359 33 1 1.8932 -0.5139 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 0.3859 3.6283 -3.0690 36 1 -2.0714 3.9163 -1.7066 37 1 -1.0304 5.2971 -1.2846 38 1 -0.7395 5.8145 -3.6918 39 1 -1.7803 4.4338 -4.1145 40 1 -1.6861 7.7809 -2.7204 41 1 -3.3858 7.7827 -2.1913 42 1 -2.1848 6.7972 -1.3233 43 1 -2.5721 7.2371 -4.9136 44 1 -3.3678 5.6663 -5.1734 45 1 -4.8796 7.6185 -6.2529 46 1 -8.8220 9.7202 -6.8925 47 1 2.8802 3.9410 -1.0892 48 1 3.0139 3.1757 -2.7077 49 1 4.9335 2.6969 -0.8645 50 1 4.3188 1.3415 -1.8580 51 1 3.7254 -0.5204 -0.5851 52 1 5.1276 0.1277 0.2994 53 1 3.6552 -0.3388 1.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663185166.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:40 Heat of formation + Delta-G solvation = -80.088810 kcal Electronic energy + Delta-G solvation = -29841.920050 eV Core-core repulsion = 25747.777631 eV Total energy + Delta-G solvation = -4094.142419 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.59548 -40.52222 -39.57086 -38.16374 -36.04977 -35.54654 -34.23795 -33.74467 -33.42364 -30.74465 -29.28189 -28.80386 -27.17794 -26.63895 -25.31583 -24.39074 -22.69037 -22.30497 -21.44183 -21.21436 -20.29550 -20.16480 -18.51756 -17.73569 -17.38711 -16.97022 -16.79811 -16.72103 -16.30471 -16.15919 -15.96206 -15.53893 -15.46538 -15.17814 -14.89949 -14.83074 -14.58202 -14.33040 -14.20592 -14.01339 -13.72968 -13.55349 -13.44557 -13.09840 -12.93270 -12.75357 -12.57655 -12.55605 -12.48444 -12.39567 -12.33175 -12.21564 -12.16146 -12.10678 -11.96270 -11.72282 -11.45896 -11.42420 -10.84406 -10.36767 -10.22015 -10.10119 -9.24223 -9.19689 -8.39693 -6.00678 1.30921 1.37373 1.46051 1.62442 1.98059 1.99102 2.24762 2.75379 3.01744 3.16157 3.28687 3.45553 3.60224 3.76034 3.85322 4.03366 4.07789 4.13750 4.19142 4.22828 4.32278 4.35990 4.40836 4.44422 4.47593 4.52171 4.56449 4.62205 4.62576 4.63155 4.76442 4.85766 4.88448 4.92240 4.96920 5.02247 5.06475 5.11785 5.18321 5.21105 5.26638 5.34462 5.46606 5.54532 5.88162 5.99641 6.02335 6.13954 6.15189 6.55563 6.61759 6.90702 7.26796 7.41992 8.00404 8.78136 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.027690 B = 0.001682 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.959931 B =16643.334431 C =16903.925370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.085 3.915 4 H 0.069 0.931 5 C -0.120 4.120 6 H 0.125 0.875 7 C 0.521 3.479 8 O -0.576 6.576 9 N -0.712 5.712 10 C 0.129 3.871 11 C 0.054 3.946 12 N -0.543 5.543 13 C 0.024 3.976 14 C 0.058 3.942 15 C 0.449 3.551 16 O -0.608 6.608 17 N -0.592 5.592 18 C -0.328 4.328 19 H 0.053 0.947 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.228 1.228 26 C -0.114 4.114 27 C 0.041 3.959 28 N -0.549 5.549 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.417 0.583 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.390 0.610 46 H 0.278 0.722 47 H 0.064 0.936 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.067 0.933 51 H 0.044 0.956 52 H 0.073 0.927 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.273 -19.565 0.158 37.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C -0.024 4.024 4 H 0.087 0.913 5 C -0.142 4.142 6 H 0.143 0.857 7 C 0.308 3.692 8 O -0.455 6.455 9 N -0.365 5.365 10 C 0.004 3.996 11 C -0.073 4.073 12 N -0.268 5.268 13 C -0.124 4.124 14 C -0.073 4.073 15 C 0.236 3.764 16 O -0.492 6.492 17 N -0.234 5.234 18 C -0.457 4.457 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.152 1.152 26 C -0.152 4.152 27 C -0.086 4.086 28 N -0.273 5.273 29 C -0.133 4.133 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.144 0.856 45 H 0.226 0.774 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.131 0.869 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.092 0.908 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 31.182 -19.365 2.260 36.776 hybrid contribution -0.304 0.540 -1.716 1.824 sum 30.878 -18.825 0.545 36.168 Atomic orbital electron populations 1.21680 0.95951 1.01422 1.01141 1.22072 0.95829 0.95854 1.03119 1.22317 0.87781 0.96034 0.96233 0.91337 1.22612 0.92963 0.98163 1.00467 0.85713 1.20763 0.85223 0.79730 0.83521 1.90717 1.61641 1.65479 1.27660 1.45726 1.30131 1.47157 1.13519 1.21075 0.87248 0.93512 0.97720 1.22250 0.91187 0.97120 0.96765 1.61298 1.32164 1.21537 1.11842 1.22456 1.00344 0.92710 0.96905 1.21832 0.92189 1.01191 0.92109 1.20983 0.88862 0.82265 0.84254 1.90536 1.70408 1.61788 1.26448 1.42015 1.18065 1.54061 1.09227 1.18990 0.95185 1.35408 0.96150 0.92931 1.26150 0.95975 0.95568 1.03854 1.69815 1.15256 1.39084 1.33569 0.85337 0.80377 0.79198 0.76406 1.18110 1.20219 1.15158 1.22737 0.91360 0.97688 1.03414 1.23138 0.97789 0.97295 0.90384 1.63737 1.04867 1.20032 1.38652 1.22639 1.00618 0.88564 1.01485 0.91800 0.94277 0.93785 0.90602 0.90223 0.74552 0.92996 0.92858 0.91690 0.87914 0.94191 0.92880 0.91197 0.89841 0.85584 0.77429 0.91212 0.91669 0.86882 0.89550 0.91454 0.93785 0.90809 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.87 71.98 0.64 -1.80 16 2 C -0.13 -1.74 4.05 30.59 0.12 -1.61 16 3 C 0.08 1.38 2.92 45.25 0.13 1.51 16 4 H 0.07 1.67 6.81 -2.39 -0.02 1.66 16 5 C -0.12 -1.50 2.26 -10.36 -0.02 -1.52 16 6 H 0.13 1.00 7.78 -2.39 -0.02 0.98 16 7 C 0.52 10.10 6.26 87.66 0.55 10.65 16 8 O -0.58 -17.02 14.62 -3.04 -0.04 -17.06 16 9 N -0.71 -10.57 5.56 -463.05 -2.57 -13.14 16 10 C 0.13 2.70 5.60 86.38 0.48 3.18 16 11 C 0.05 0.97 5.07 86.30 0.44 1.41 16 12 N -0.54 -15.52 4.50 -927.05 -4.17 -19.69 16 13 C 0.02 0.73 8.96 127.69 1.14 1.87 16 14 C 0.06 1.65 5.45 85.56 0.47 2.11 16 15 C 0.45 19.91 7.47 87.66 0.66 20.56 16 16 O -0.61 -33.65 13.91 -3.09 -0.04 -33.70 16 17 N -0.59 -27.40 5.09 -306.97 -1.56 -28.97 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 19 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 20 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 21 N -0.94 -56.58 13.96 21.66 0.30 -56.28 16 22 Si 0.97 38.08 27.74 68.60 1.90 39.99 16 23 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 26 C -0.11 -0.99 6.51 31.98 0.21 -0.78 16 27 C 0.04 0.37 6.73 86.77 0.58 0.95 16 28 N -0.55 -7.61 5.44 -886.56 -4.83 -12.44 16 29 C 0.01 0.14 8.25 127.69 1.05 1.20 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.87 7.91 -2.39 -0.02 0.85 16 32 H 0.04 0.78 7.11 -2.38 -0.02 0.76 16 33 H 0.08 0.97 6.37 -2.39 -0.02 0.95 16 34 H 0.08 0.77 6.86 -2.39 -0.02 0.75 16 35 H 0.42 2.91 8.47 -92.71 -0.79 2.12 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.31 6.55 -2.39 -0.02 1.29 16 38 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 39 H 0.10 1.39 7.93 -2.39 -0.02 1.37 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 2.12 5.83 -2.39 -0.01 2.10 16 42 H 0.07 2.00 6.47 -2.39 -0.02 1.99 16 43 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 44 H 0.13 2.76 7.93 -2.39 -0.02 2.75 16 45 H 0.39 14.66 5.76 -92.71 -0.53 14.13 16 46 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 47 H 0.06 0.82 8.04 -2.38 -0.02 0.80 16 48 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 50 H 0.07 0.38 7.80 -2.39 -0.02 0.36 16 51 H 0.04 0.33 6.51 -2.39 -0.02 0.31 16 52 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.07 0.71 6.74 -2.38 -0.02 0.69 16 Total: -1.00 -84.82 407.27 -3.70 -88.52 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.46 Total: 33.85 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 7.77 Total: 18.91 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -12.83 Total: -130.51 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.09 Total: -50.76 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.90 Total: 39.99 kcal Total: -84.82 -3.70 -88.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185166.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.430 kcal (2) G-P(sol) polarization free energy of solvation -84.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds