Wall clock time and date at job start Wed Apr 1 2020 00:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 N 1.46497 * 109.47218 * 119.99804 * 2 1 3 5 5 C 1.34780 * 119.99566 * 85.00262 * 4 2 1 6 6 O 1.21280 * 120.00423 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99795 * 180.02562 * 5 4 2 8 8 N 1.46901 * 109.46921 * 179.97438 * 7 5 4 9 9 C 1.46893 * 111.00243 * 293.95400 * 8 7 5 10 10 C 1.46906 * 110.99853 * 169.99766 * 8 7 5 11 11 C 1.50693 * 109.47155 * 190.00173 * 10 8 7 12 12 O 1.21285 * 120.00358 * 359.97438 * 11 10 8 13 13 N 1.34783 * 120.00123 * 180.02562 * 11 10 8 14 14 C 1.46495 * 120.00063 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47145 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.64423 * 56.68460 * 15 14 13 17 17 C 1.55159 * 110.72478 * 180.02562 * 15 14 13 18 18 C 1.54904 * 101.58612 * 153.86420 * 17 15 14 19 19 N 1.47432 * 104.83116 * 322.98899 * 18 17 15 20 20 C 1.36937 * 125.64788 * 204.16148 * 19 18 17 21 21 H 1.07997 * 119.99531 * 179.97438 * 20 19 18 22 22 C 1.38804 * 120.00132 * 359.96358 * 20 19 18 23 23 N 1.31615 * 120.00135 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47216 * 89.99443 * 24 22 20 26 26 H 1.48501 * 109.47086 * 209.99991 * 24 22 20 27 27 H 1.48510 * 109.46826 * 329.99777 * 24 22 20 28 28 C 1.47019 * 108.69991 * 24.13142 * 19 18 17 29 29 H 1.09006 * 109.46570 * 299.99863 * 1 2 3 30 30 H 1.09000 * 109.47614 * 59.99489 * 1 2 3 31 31 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46576 * 240.00035 * 2 1 3 33 33 H 1.09007 * 109.47111 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47605 * 299.99893 * 3 2 1 35 35 H 1.08996 * 109.47469 * 60.00581 * 3 2 1 36 36 H 0.96995 * 120.00423 * 264.99567 * 4 2 1 37 37 H 1.09002 * 109.47060 * 299.99722 * 7 5 4 38 38 H 1.09001 * 109.47380 * 59.99809 * 7 5 4 39 39 H 1.08999 * 109.47439 * 60.00146 * 9 8 7 40 40 H 1.08997 * 109.47257 * 180.02562 * 9 8 7 41 41 H 1.09006 * 109.46808 * 299.99830 * 9 8 7 42 42 H 1.09000 * 109.47257 * 310.00208 * 10 8 7 43 43 H 1.09006 * 109.46871 * 70.00245 * 10 8 7 44 44 H 0.96996 * 119.99479 * 359.97438 * 13 11 10 45 45 H 1.09000 * 109.46943 * 299.99591 * 14 13 11 46 46 H 1.09002 * 109.47535 * 59.99242 * 14 13 11 47 47 H 1.09006 * 111.00446 * 271.94094 * 17 15 14 48 48 H 1.09004 * 110.99963 * 35.78789 * 17 15 14 49 49 H 1.09002 * 110.36882 * 204.15590 * 18 17 15 50 50 H 1.08995 * 110.46187 * 81.87671 * 18 17 15 51 51 H 0.97001 * 120.00216 * 180.02562 * 23 22 20 52 52 H 1.08996 * 109.88164 * 239.51956 * 28 19 18 53 53 H 1.09006 * 110.01400 * 118.43054 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -2.0322 1.1943 6 8 1.8583 -2.6678 0.2026 7 6 2.6489 -2.7427 2.4250 8 7 2.6979 -4.1885 2.1698 9 6 1.3482 -4.7351 1.9767 10 6 3.4003 -4.8906 3.2524 11 6 3.6473 -6.3206 2.8463 12 8 3.2745 -6.7163 1.7621 13 7 4.2816 -7.1603 3.6884 14 6 4.5222 -8.5504 3.2935 15 6 5.2536 -9.2816 4.4209 16 1 4.6858 -9.2220 5.3494 17 6 5.5242 -10.7591 4.0322 18 6 6.7720 -11.0832 4.8910 19 7 7.5696 -9.8433 4.8807 20 6 8.9210 -9.7619 5.0868 21 1 9.4145 -8.8018 5.0587 22 6 9.6562 -10.9134 5.3320 23 7 9.0546 -12.0835 5.3669 24 14 11.4995 -10.8023 5.6138 25 1 11.7687 -10.6201 7.0627 26 1 12.1485 -12.0523 5.1430 27 1 12.0468 -9.6460 4.8594 28 6 6.6739 -8.7089 4.6119 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.2491 -0.1823 1.9894 37 1 3.6481 -2.3826 2.6703 38 1 1.9760 -2.5438 3.2591 39 1 0.8764 -4.2457 1.1246 40 1 1.4135 -5.8070 1.7901 41 1 0.7530 -4.5582 2.8727 42 1 4.3532 -4.3982 3.4465 43 1 2.7899 -4.8695 4.1552 44 1 4.5794 -6.8440 4.5557 45 1 3.5695 -9.0428 3.0987 46 1 5.1332 -8.5712 2.3910 47 1 4.6837 -11.3960 4.3083 48 1 5.7475 -10.8487 2.9691 49 1 7.3374 -11.9016 4.4450 50 1 6.4782 -11.3369 5.9095 51 1 9.5683 -12.8881 5.5386 52 1 6.9907 -8.1932 3.7054 53 1 6.6846 -8.0174 5.4545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714640887.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:42 Heat of formation + Delta-G solvation = -66.095911 kcal Electronic energy + Delta-G solvation = -29426.138219 eV Core-core repulsion = 25332.602578 eV Total energy + Delta-G solvation = -4093.535641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.17588 -40.61455 -39.29771 -37.70959 -36.60761 -35.92182 -34.28598 -32.72478 -31.76106 -30.38234 -29.26034 -28.70301 -28.09195 -27.20018 -25.38775 -24.06484 -22.26042 -22.00664 -21.37528 -21.33501 -20.89091 -18.91510 -18.41685 -17.82585 -17.34795 -17.00816 -16.89701 -16.69962 -16.42340 -16.24777 -15.69881 -15.52582 -15.35069 -15.20990 -14.87685 -14.38937 -14.32494 -14.24731 -13.89640 -13.71208 -13.52638 -13.37002 -13.16243 -13.13622 -13.06658 -12.87534 -12.78632 -12.67807 -12.59775 -12.49506 -12.25815 -12.00860 -11.90050 -11.84888 -11.80210 -11.56219 -11.35436 -10.97524 -10.73080 -10.55707 -10.06500 -10.00517 -9.24654 -8.86300 -7.76260 -5.20197 1.47018 1.48890 1.57540 1.70958 1.73331 1.93826 2.35505 2.50590 3.09177 3.33473 3.65449 3.77907 3.80601 3.90666 4.00678 4.02550 4.09628 4.15746 4.23757 4.32348 4.33659 4.40106 4.45500 4.48342 4.59890 4.65097 4.67258 4.72571 4.74112 4.76904 4.84856 4.93732 4.94025 5.04232 5.08034 5.14642 5.19474 5.27258 5.32780 5.39602 5.48228 5.53673 5.62226 5.67459 5.84353 5.90522 5.94811 6.33231 6.66949 6.67989 7.12477 7.36920 7.39496 7.80867 8.44337 9.25660 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.001648 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.284140 B =16988.854510 C =17941.961315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.132 3.868 3 C -0.151 4.151 4 N -0.716 5.716 5 C 0.506 3.494 6 O -0.570 6.570 7 C 0.039 3.961 8 N -0.539 5.539 9 C 0.026 3.974 10 C 0.043 3.957 11 C 0.505 3.495 12 O -0.572 6.572 13 N -0.717 5.717 14 C 0.147 3.853 15 C -0.092 4.092 16 H 0.099 0.901 17 C -0.124 4.124 18 C 0.152 3.848 19 N -0.629 5.629 20 C -0.238 4.238 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.949 5.949 24 Si 0.979 3.021 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.270 1.270 28 C 0.139 3.861 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.416 0.584 37 H 0.134 0.866 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.134 0.866 43 H 0.099 0.901 44 H 0.415 0.585 45 H 0.070 0.930 46 H 0.045 0.955 47 H 0.088 0.912 48 H 0.058 0.942 49 H 0.069 0.931 50 H -0.008 1.008 51 H 0.246 0.754 52 H 0.019 0.981 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 28.212 -1.668 33.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.209 4.209 4 N -0.370 5.370 5 C 0.293 3.707 6 O -0.449 6.449 7 C -0.091 4.091 8 N -0.264 5.264 9 C -0.122 4.122 10 C -0.087 4.087 11 C 0.292 3.708 12 O -0.451 6.451 13 N -0.371 5.371 14 C 0.022 3.978 15 C -0.111 4.111 16 H 0.117 0.883 17 C -0.163 4.163 18 C 0.027 3.973 19 N -0.355 5.355 20 C -0.368 4.368 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.195 1.195 28 C 0.014 3.986 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.152 0.848 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.151 0.849 43 H 0.117 0.883 44 H 0.251 0.749 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.010 0.990 51 H 0.056 0.944 52 H 0.037 0.963 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.574 27.307 -3.555 33.216 hybrid contribution 0.910 -0.223 1.328 1.625 sum -17.664 27.085 -2.227 32.412 Atomic orbital electron populations 1.22134 0.95115 1.01116 1.03272 1.20946 0.94302 0.94018 0.87976 1.22012 1.01734 0.93021 1.04123 1.46002 1.67340 1.06205 1.17486 1.21055 0.76950 0.82785 0.89911 1.90706 1.50693 1.66750 1.36709 1.22113 1.05110 0.87237 0.94644 1.61106 1.19312 1.02449 1.43503 1.22466 0.88055 1.01112 1.00528 1.22055 1.02708 0.90348 0.93590 1.21154 0.76940 0.88725 0.83946 1.90696 1.51999 1.78501 1.23901 1.45916 1.59430 1.10927 1.20778 1.21102 0.99267 0.81200 0.96207 1.22280 0.94898 0.95248 0.98708 0.88296 1.22850 0.98406 0.95372 0.99706 1.21720 0.89910 0.90607 0.95071 1.44825 1.03545 1.03359 1.83755 1.19465 0.83263 0.93740 1.40290 0.90116 1.25635 1.02594 0.95169 1.02755 1.70059 1.34890 0.97710 1.57240 0.85061 0.79677 0.76790 0.77697 1.21197 1.22136 1.19530 1.21492 0.89470 0.90331 0.97338 0.90957 0.90731 0.94936 0.92468 0.91900 0.90300 0.90290 0.74652 0.84838 0.88538 0.91818 0.92206 0.94397 0.84855 0.88345 0.74854 0.91164 0.93620 0.89328 0.92296 0.91317 0.99000 0.94412 0.96335 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 71.98 0.68 -1.10 16 2 C 0.13 1.54 3.18 44.99 0.14 1.68 16 3 C -0.15 -0.79 9.38 71.98 0.68 -0.11 16 4 N -0.72 -7.46 5.08 -442.54 -2.25 -9.71 16 5 C 0.51 9.08 7.52 87.66 0.66 9.74 16 6 O -0.57 -16.78 13.97 -3.03 -0.04 -16.83 16 7 C 0.04 0.47 5.45 85.56 0.47 0.93 16 8 N -0.54 -11.13 4.24 -931.65 -3.95 -15.07 16 9 C 0.03 0.62 8.85 127.69 1.13 1.75 16 10 C 0.04 0.67 5.45 85.55 0.47 1.14 16 11 C 0.51 12.66 7.52 87.65 0.66 13.32 16 12 O -0.57 -20.41 14.33 -3.04 -0.04 -20.45 16 13 N -0.72 -16.07 5.40 -463.07 -2.50 -18.57 16 14 C 0.15 4.09 4.99 86.38 0.43 4.53 16 15 C -0.09 -2.84 3.02 -9.61 -0.03 -2.87 16 16 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 17 C -0.12 -4.50 6.53 31.98 0.21 -4.29 16 18 C 0.15 7.44 5.89 86.85 0.51 7.95 16 19 N -0.63 -32.08 3.39 -691.99 -2.35 -34.43 16 20 C -0.24 -13.36 10.27 84.03 0.86 -12.50 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 22 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 23 N -0.95 -56.83 10.09 21.65 0.22 -56.61 16 24 Si 0.98 45.73 29.55 68.60 2.03 47.75 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 C 0.14 5.37 6.52 86.73 0.57 5.93 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 1.04 7.58 -2.39 -0.02 1.02 16 33 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.42 1.20 8.60 -92.71 -0.80 0.40 16 37 H 0.13 0.83 7.93 -2.39 -0.02 0.81 16 38 H 0.10 0.55 8.12 -2.39 -0.02 0.53 16 39 H 0.06 1.78 5.88 -2.39 -0.01 1.76 16 40 H 0.06 1.75 5.82 -2.39 -0.01 1.74 16 41 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.13 1.34 7.93 -2.39 -0.02 1.32 16 43 H 0.10 0.90 8.12 -2.38 -0.02 0.88 16 44 H 0.41 6.84 8.33 -92.71 -0.77 6.06 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 1.51 8.06 -2.39 -0.02 1.49 16 47 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 48 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 49 H 0.07 3.90 5.87 -2.39 -0.01 3.88 16 50 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 51 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 52 H 0.02 0.75 7.76 -2.39 -0.02 0.73 16 53 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -84.58 418.83 -1.65 -86.24 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.67 Total: 15.06 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 7.90 Total: 22.62 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -10.83 Total: -134.40 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.09 Total: -37.28 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -84.58 -1.65 -86.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714640887.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.140 kcal (2) G-P(sol) polarization free energy of solvation -84.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds