Wall clock time and date at job start Tue Mar 31 2020 23:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47470 * 2 1 4 4 O 1.21283 * 119.99437 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00396 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00089 * 180.02562 * 5 3 2 7 7 H 1.08995 * 109.46802 * 34.99886 * 6 5 3 8 8 C 1.52996 * 109.46914 * 275.00070 * 6 5 3 9 9 C 1.50694 * 109.46953 * 155.00216 * 6 5 3 10 10 O 1.21280 * 120.00170 * 0.02562 * 9 6 5 11 11 N 1.34781 * 119.99924 * 179.97438 * 9 6 5 12 12 C 1.46495 * 119.99799 * 359.97438 * 11 9 6 13 13 C 1.46498 * 119.99773 * 180.02562 * 11 9 6 14 14 C 1.52994 * 109.47212 * 269.99544 * 13 11 9 15 15 N 1.46897 * 109.47643 * 180.02562 * 14 13 11 16 16 C 1.46898 * 111.00639 * 170.00553 * 15 14 13 17 17 C 1.53232 * 109.34077 * 172.74773 * 16 15 14 18 18 N 1.47078 * 108.52568 * 53.82710 * 17 16 15 19 19 C 1.36943 * 120.88200 * 128.79038 * 18 17 16 20 20 H 1.07999 * 119.99657 * 206.58893 * 19 18 17 21 21 C 1.38807 * 119.99782 * 26.59378 * 19 18 17 22 22 N 1.31618 * 120.00188 * 17.00985 * 21 19 18 23 23 Si 1.86799 * 119.99686 * 197.00832 * 21 19 18 24 24 H 1.48496 * 109.47164 * 60.00292 * 23 21 19 25 25 H 1.48510 * 109.47314 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47403 * 299.99703 * 23 21 19 27 27 C 1.47074 * 118.23475 * 308.81659 * 18 17 16 28 28 C 1.46902 * 110.99959 * 45.69494 * 15 14 13 29 29 H 1.08999 * 109.47312 * 59.99642 * 1 2 3 30 30 H 1.08995 * 109.47303 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46597 * 299.99791 * 1 2 3 32 32 H 1.09002 * 109.46597 * 240.00208 * 2 1 3 33 33 H 1.08999 * 109.47312 * 120.00358 * 2 1 3 34 34 H 0.96994 * 119.99638 * 0.02562 * 5 3 2 35 35 H 1.09004 * 109.47250 * 180.02562 * 8 6 5 36 36 H 1.09000 * 109.47750 * 300.00025 * 8 6 5 37 37 H 1.09001 * 109.47351 * 59.99889 * 8 6 5 38 38 H 1.08999 * 109.47609 * 269.99874 * 12 11 9 39 39 H 1.09001 * 109.46967 * 30.00913 * 12 11 9 40 40 H 1.09005 * 109.47070 * 149.99868 * 12 11 9 41 41 H 1.09000 * 109.47053 * 150.00002 * 13 11 9 42 42 H 1.09000 * 109.47634 * 29.99827 * 13 11 9 43 43 H 1.09004 * 109.47176 * 60.00076 * 14 13 11 44 44 H 1.09005 * 109.47474 * 300.00797 * 14 13 11 45 45 H 1.08998 * 109.49451 * 52.78086 * 16 15 14 46 46 H 1.09003 * 109.48501 * 292.70700 * 16 15 14 47 47 H 1.09004 * 109.62738 * 173.54003 * 17 16 15 48 48 H 1.09000 * 109.62796 * 293.91651 * 17 16 15 49 49 H 0.97006 * 119.99914 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.63035 * 170.89298 * 27 18 17 51 51 H 1.08997 * 109.62936 * 291.47090 * 27 18 17 52 52 H 1.09000 * 109.48602 * 67.29911 * 28 15 14 53 53 H 1.09000 * 109.49677 * 307.22315 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0483 0.0011 7 1 3.1731 3.6712 0.5905 8 6 3.8978 3.5714 -1.4357 9 6 5.2271 3.0924 0.6020 10 8 5.7521 2.0707 0.9910 11 7 5.8794 4.2672 0.7061 12 6 5.2459 5.5011 0.2347 13 6 7.2225 4.3100 1.2898 14 6 7.1154 4.5282 2.8003 15 7 8.4621 4.5717 3.3855 16 6 8.4136 5.0129 4.7858 17 6 9.8057 4.8720 5.4107 18 7 10.7721 5.5897 4.5656 19 6 11.6360 6.5040 5.1068 20 1 12.0203 7.3096 4.4986 21 6 12.0179 6.3954 6.4368 22 7 11.8363 5.2634 7.0833 23 14 12.7896 7.8558 7.3092 24 1 11.8386 8.9963 7.3010 25 1 13.1044 7.4846 8.7123 26 1 14.0387 8.2477 6.6082 27 6 10.7856 5.2996 3.1238 28 6 9.3550 5.4237 2.5888 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9877 0.9298 0.0005 35 1 4.2615 4.5989 -1.4354 36 1 4.5705 2.9484 -2.0252 37 1 2.8987 3.5394 -1.8704 38 1 5.4988 5.6621 -0.8132 39 1 4.1642 5.4168 0.3387 40 1 5.6033 6.3427 0.8281 41 1 7.7866 5.1290 0.8435 42 1 7.7339 3.3675 1.0941 43 1 6.5512 3.7092 3.2466 44 1 6.6039 5.4706 2.9960 45 1 7.7034 4.3967 5.3370 46 1 8.0999 6.0560 4.8277 47 1 9.8031 5.3037 6.4116 48 1 10.0765 3.8178 5.4675 49 1 12.1036 5.1874 8.0128 50 1 11.4309 6.0141 2.6126 51 1 11.1521 4.2867 2.9575 52 1 9.0282 6.4610 2.6614 53 1 9.3274 5.1054 1.5467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481469310.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:44 Heat of formation + Delta-G solvation = -29.482881 kcal Electronic energy + Delta-G solvation = -30394.014531 eV Core-core repulsion = 26302.066550 eV Total energy + Delta-G solvation = -4091.947981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.89971 -39.63661 -38.23617 -36.13225 -35.47475 -34.38228 -33.24878 -31.71569 -31.02192 -30.12401 -28.81889 -27.27485 -26.21702 -25.32889 -24.00649 -23.27772 -22.41959 -21.35147 -20.63173 -19.60873 -19.07711 -18.01395 -17.16935 -16.81403 -16.49972 -16.23352 -15.88886 -15.35628 -15.05779 -14.68889 -14.51263 -14.42152 -14.09685 -13.89512 -13.76051 -13.53165 -13.44899 -13.36991 -13.13021 -12.84613 -12.82202 -12.66750 -12.30044 -12.15924 -12.10953 -11.99169 -11.81515 -11.53614 -11.39879 -11.15516 -10.92381 -10.69563 -10.50757 -10.32717 -10.24208 -10.09567 -10.07671 -9.73833 -9.64787 -9.51429 -8.92731 -8.49764 -7.82257 -6.66130 -5.77404 -3.18736 2.20957 2.29855 2.42855 2.97272 3.38228 3.44140 3.44956 3.98191 4.35047 4.42551 4.51083 4.61008 4.64005 4.69944 4.72690 4.76803 4.91031 4.97798 5.09776 5.17646 5.20533 5.32024 5.34935 5.39291 5.41509 5.44075 5.51392 5.55788 5.69926 5.76646 5.83453 5.88502 5.89338 5.97545 6.01315 6.10731 6.22294 6.26390 6.34440 6.52855 6.68766 6.92874 7.00411 7.12757 7.24470 7.58135 7.65452 7.70160 7.78445 7.81663 7.86837 8.44003 9.21671 9.85239 10.43939 11.31388 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026411 B = 0.001883 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.890189 B =14864.565236 C =15328.343377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.515 3.485 4 O -0.543 6.543 5 N -0.715 5.715 6 C 0.126 3.874 7 H 0.113 0.887 8 C -0.171 4.171 9 C 0.510 3.490 10 O -0.528 6.528 11 N -0.609 5.609 12 C 0.070 3.930 13 C 0.112 3.888 14 C 0.044 3.956 15 N -0.528 5.528 16 C 0.038 3.962 17 C 0.178 3.822 18 N -0.595 5.595 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.148 3.852 28 C 0.036 3.964 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.060 0.940 46 H 0.025 0.975 47 H 0.089 0.911 48 H 0.027 0.973 49 H 0.254 0.746 50 H 0.055 0.945 51 H 0.026 0.974 52 H 0.027 0.973 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.045 -5.804 -18.226 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.303 3.697 4 O -0.420 6.420 5 N -0.369 5.369 6 C 0.017 3.983 7 H 0.131 0.869 8 C -0.229 4.229 9 C 0.296 3.704 10 O -0.404 6.404 11 N -0.342 5.342 12 C -0.073 4.073 13 C -0.010 4.010 14 C -0.086 4.086 15 N -0.254 5.254 16 C -0.091 4.091 17 C 0.052 3.948 18 N -0.318 5.318 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.093 4.093 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.043 0.957 47 H 0.107 0.893 48 H 0.045 0.955 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.044 0.956 52 H 0.045 0.955 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.056 -6.187 -17.831 27.540 hybrid contribution 0.402 1.321 0.603 1.507 sum -19.653 -4.866 -17.228 26.585 Atomic orbital electron populations 1.21531 0.92844 1.01702 1.03364 1.21631 0.98698 0.93347 1.04703 1.20847 0.81578 0.92175 0.75144 1.90699 1.55246 1.46536 1.49494 1.45840 1.07644 1.07866 1.75564 1.20721 0.93421 0.85663 0.98496 0.86930 1.22383 1.03733 1.02527 0.94267 1.20590 0.87341 0.83627 0.78838 1.90734 1.67935 1.33066 1.48645 1.47777 1.18033 1.07194 1.61217 1.22084 0.98568 0.86693 0.99969 1.21769 0.81695 1.04262 0.93253 1.22404 0.92060 1.00046 0.94062 1.62009 1.07434 1.52818 1.03131 1.22893 1.01732 0.96904 0.87592 1.20857 0.83304 0.95754 0.94895 1.44105 1.38889 1.47257 1.01575 1.19146 1.21284 1.02981 0.94844 0.91699 1.25027 0.99433 0.96553 0.98727 1.70022 1.51045 1.22959 1.10721 0.86363 0.79147 0.82417 0.78789 1.21161 1.21611 1.20889 1.20977 0.92012 0.98225 0.86633 1.22763 0.96265 0.94036 0.96241 0.91995 0.91968 0.91932 0.88751 0.88592 0.75225 0.89908 0.91766 0.90831 0.91647 0.90617 0.90505 0.89802 0.88684 0.90992 0.95578 0.92176 0.95709 0.89331 0.95473 0.93548 0.92649 0.95600 0.95471 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.16 0.34 -0.52 16 2 C -0.14 -0.86 6.42 -27.88 -0.18 -1.04 16 3 C 0.52 4.77 7.79 -10.99 -0.09 4.68 16 4 O -0.54 -6.77 15.64 5.55 0.09 -6.69 16 5 N -0.71 -6.27 4.95 -54.94 -0.27 -6.54 16 6 C 0.13 1.12 2.18 -69.09 -0.15 0.97 16 7 H 0.11 1.06 6.84 -51.93 -0.36 0.70 16 8 C -0.17 -1.17 9.12 37.16 0.34 -0.83 16 9 C 0.51 5.69 7.14 -10.99 -0.08 5.61 16 10 O -0.53 -7.70 15.42 5.56 0.09 -7.61 16 11 N -0.61 -6.08 2.87 -181.58 -0.52 -6.60 16 12 C 0.07 0.45 8.80 59.84 0.53 0.98 16 13 C 0.11 1.36 4.66 -4.05 -0.02 1.34 16 14 C 0.04 0.64 5.59 -3.83 -0.02 0.62 16 15 N -0.53 -9.54 4.78 -234.33 -1.12 -10.66 16 16 C 0.04 0.76 5.58 -3.71 -0.02 0.74 16 17 C 0.18 4.37 5.42 -3.61 -0.02 4.35 16 18 N -0.59 -15.18 3.04 -172.02 -0.52 -15.70 16 19 C -0.25 -6.99 9.63 -15.06 -0.15 -7.13 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 22 N -0.90 -26.44 11.15 55.49 0.62 -25.82 16 23 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.15 3.15 6.69 -3.61 -0.02 3.12 16 28 C 0.04 0.63 5.04 -3.70 -0.02 0.61 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 3.33 7.79 -40.82 -0.32 3.01 16 35 H 0.08 0.43 4.53 -51.93 -0.24 0.20 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.31 6.95 -51.93 -0.36 -0.05 16 39 H 0.08 0.40 6.01 -51.93 -0.31 0.09 16 40 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 41 H 0.08 0.91 6.11 -51.93 -0.32 0.59 16 42 H 0.09 1.34 7.42 -51.93 -0.39 0.95 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 45 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 2.39 6.12 -51.93 -0.32 2.08 16 48 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.06 1.12 7.95 -51.93 -0.41 0.70 16 51 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 53 H 0.07 0.94 5.73 -51.93 -0.30 0.64 16 LS Contribution 410.48 15.07 6.19 6.19 Total: -1.00 -34.06 410.48 -9.32 -43.38 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -9.19 Total: -0.09 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 0.36 Total: 13.45 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -1.82 Total: -65.32 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.17 Total: -14.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.06 -9.32 -43.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481469310.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.896 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds