Wall clock time and date at job start Tue Mar 31 2020 23:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.46513 * 2 1 4 4 C 1.53042 * 109.46016 * 119.96940 * 2 1 3 5 5 C 1.53121 * 109.27263 * 179.19627 * 4 2 1 6 6 H 1.08999 * 109.57685 * 62.28230 * 5 4 2 7 7 C 1.50701 * 109.51842 * 182.43729 * 5 4 2 8 8 O 1.21288 * 120.00292 * 359.68309 * 7 5 4 9 9 N 1.34777 * 120.00115 * 179.68218 * 7 5 4 10 10 C 1.46500 * 120.00376 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47473 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99769 * 66.04707 * 12 11 10 14 14 C 1.46896 * 111.00152 * 189.99788 * 12 11 10 15 15 C 1.50706 * 109.47293 * 170.00150 * 14 12 11 16 16 O 1.21287 * 119.99729 * 0.02562 * 15 14 12 17 17 N 1.34772 * 119.99814 * 180.02562 * 15 14 12 18 18 C 1.37097 * 119.99566 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00358 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99710 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00422 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99725 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47131 * 90.00521 * 22 20 18 24 24 H 1.48504 * 109.47048 * 209.99726 * 22 20 18 25 25 H 1.48498 * 109.47432 * 329.99934 * 22 20 18 26 26 C 1.53117 * 109.16164 * 302.33914 * 5 4 2 27 27 C 1.53037 * 109.27600 * 57.66079 * 26 5 4 28 28 N 1.46846 * 109.52450 * 300.81750 * 27 26 5 29 29 C 1.46893 * 111.00072 * 185.83968 * 28 27 26 30 30 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47236 * 299.97576 * 1 2 3 32 32 H 1.08997 * 109.46850 * 59.98100 * 1 2 3 33 33 H 1.08996 * 109.50258 * 59.25497 * 4 2 1 34 34 H 1.09002 * 109.50225 * 299.13300 * 4 2 1 35 35 H 0.97004 * 120.00228 * 0.02562 * 9 7 5 36 36 H 1.09002 * 109.47129 * 59.99747 * 10 9 7 37 37 H 1.08998 * 109.46845 * 300.00553 * 10 9 7 38 38 H 1.09002 * 109.47153 * 59.99757 * 11 10 9 39 39 H 1.09001 * 109.46832 * 299.99948 * 11 10 9 40 40 H 1.08995 * 109.47407 * 59.99898 * 13 12 11 41 41 H 1.09006 * 109.46770 * 179.97438 * 13 12 11 42 42 H 1.09003 * 109.46848 * 299.99626 * 13 12 11 43 43 H 1.09006 * 109.47466 * 290.00215 * 14 12 11 44 44 H 1.09000 * 109.46995 * 50.00413 * 14 12 11 45 45 H 0.97001 * 120.00255 * 0.02562 * 17 15 14 46 46 H 0.96991 * 120.00499 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.50110 * 177.60010 * 26 5 4 48 48 H 1.09000 * 109.50854 * 297.71484 * 26 5 4 49 49 H 1.08998 * 109.46211 * 60.83370 * 27 26 5 50 50 H 1.09000 * 109.46131 * 180.80222 * 27 26 5 51 51 H 1.09004 * 109.47270 * 56.04953 * 29 28 27 52 52 H 1.09006 * 109.47122 * 176.04942 * 29 28 27 53 53 H 1.08996 * 109.47305 * 296.04737 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5710 -0.7359 1.2356 6 1 3.9466 0.2868 1.2677 7 6 4.0783 -1.4965 2.4336 8 8 3.2936 -1.9747 3.2253 9 7 5.4040 -1.6455 2.6253 10 6 5.8973 -2.3854 3.7895 11 6 7.4270 -2.4060 3.7702 12 7 7.9216 -3.1474 4.9380 13 6 7.5519 -4.5668 4.8556 14 6 9.3746 -2.9895 5.0851 15 6 9.8089 -3.5508 6.4146 16 8 8.9886 -4.0352 7.1654 17 7 11.1086 -3.5146 6.7692 18 6 11.5035 -4.0247 7.9789 19 1 10.7731 -4.4553 8.6478 20 6 12.8435 -3.9869 8.3447 21 7 13.7321 -3.4617 7.5314 22 14 13.3817 -4.6827 9.9926 23 1 13.7219 -6.1197 9.8359 24 1 14.5742 -3.9419 10.4770 25 1 12.2773 -4.5396 10.9749 26 6 4.0548 -1.4188 -0.0466 27 6 3.4865 -0.6778 -1.2590 28 7 2.0193 -0.6919 -1.1993 29 6 1.4374 -0.1108 -2.4165 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3633 0.5141 -0.8898 33 1 1.6659 -1.7446 1.2578 34 1 1.6895 -0.1980 2.1400 35 1 6.0317 -1.2629 1.9924 36 1 5.5194 -3.4073 3.7574 37 1 5.5522 -1.8991 4.7019 38 1 7.8045 -1.3839 3.8026 39 1 7.7723 -2.8921 2.8578 40 1 7.9847 -5.0033 3.9555 41 1 7.9308 -5.0923 5.7322 42 1 6.4664 -4.6579 4.8178 43 1 9.8814 -3.5244 4.2819 44 1 9.6319 -1.9314 5.0360 45 1 11.7645 -3.1269 6.1688 46 1 14.6675 -3.4356 7.7866 47 1 5.1439 -1.3947 -0.0830 48 1 3.7126 -2.4537 -0.0592 49 1 3.8403 0.3531 -1.2532 50 1 3.8175 -1.1701 -2.1734 51 1 1.8129 -0.6447 -3.2895 52 1 0.3515 -0.1973 -2.3771 53 1 1.7158 0.9407 -2.4862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663258433.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:00 Heat of formation + Delta-G solvation = -94.088660 kcal Electronic energy + Delta-G solvation = -29379.254084 eV Core-core repulsion = 25284.504586 eV Total energy + Delta-G solvation = -4094.749498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35214 -40.38790 -39.59812 -38.15979 -36.02074 -35.53233 -34.70705 -33.32496 -33.26541 -30.75045 -29.16064 -28.52075 -27.46735 -26.91155 -25.45186 -24.03666 -23.10830 -22.32533 -21.23627 -20.93639 -20.59817 -19.84610 -18.15418 -17.64697 -17.40489 -16.92053 -16.68678 -16.55475 -16.46029 -16.07363 -16.03885 -15.63551 -15.46094 -15.16770 -15.03398 -14.93518 -14.69955 -14.33852 -13.88640 -13.77368 -13.58862 -13.44606 -13.12123 -13.03905 -12.98946 -12.92650 -12.76848 -12.59726 -12.57190 -12.53336 -12.39543 -12.16635 -12.13867 -12.08397 -11.86377 -11.60267 -11.45124 -11.35705 -10.76103 -10.28104 -10.10912 -9.98311 -9.23606 -9.22170 -8.45424 -5.93600 1.38389 1.42355 1.54734 1.61932 2.00924 2.07671 2.31244 2.90995 2.96912 3.21717 3.42925 3.59010 3.71029 3.81679 3.87584 4.05489 4.06935 4.19192 4.26278 4.30889 4.36761 4.41677 4.46883 4.51207 4.53690 4.58077 4.60370 4.64073 4.65081 4.69401 4.81924 4.86071 4.89329 4.91494 4.95291 4.97314 5.08266 5.11871 5.19223 5.21053 5.26798 5.36927 5.42602 5.44310 5.85913 6.05347 6.17458 6.18324 6.19696 6.54736 6.62934 7.15130 7.25619 7.58764 8.15373 8.71889 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.037987 B = 0.001492 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.921531 B =18756.857139 C =19146.967330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.048 0.952 4 C -0.089 4.089 5 C -0.099 4.099 6 H 0.118 0.882 7 C 0.514 3.486 8 O -0.587 6.587 9 N -0.712 5.712 10 C 0.129 3.871 11 C 0.053 3.947 12 N -0.540 5.540 13 C 0.025 3.975 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.617 6.617 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.275 1.275 26 C -0.103 4.103 27 C 0.058 3.942 28 N -0.557 5.557 29 C 0.022 3.978 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.417 0.583 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.397 0.603 46 H 0.277 0.723 47 H 0.097 0.903 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.074 0.926 52 H 0.074 0.926 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 10.860 -25.179 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.066 0.934 4 C -0.128 4.128 5 C -0.121 4.121 6 H 0.135 0.865 7 C 0.302 3.698 8 O -0.467 6.467 9 N -0.365 5.365 10 C 0.005 3.995 11 C -0.074 4.074 12 N -0.265 5.265 13 C -0.123 4.123 14 C -0.070 4.070 15 C 0.226 3.774 16 O -0.503 6.503 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.200 1.200 26 C -0.141 4.141 27 C -0.070 4.070 28 N -0.283 5.283 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.107 0.893 51 H 0.092 0.908 52 H 0.093 0.907 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.572 9.934 -23.651 32.266 hybrid contribution 1.552 0.235 -0.010 1.570 sum -18.020 10.169 -23.661 31.432 Atomic orbital electron populations 1.21899 0.93671 1.02338 1.02525 1.21593 0.96034 0.95190 0.89458 0.93382 1.21395 0.93035 1.01235 0.97098 1.21411 0.97397 1.00868 0.92388 0.86459 1.21179 0.81975 0.79601 0.87037 1.90711 1.56836 1.50848 1.48274 1.45775 1.07136 1.56244 1.27375 1.21073 0.93854 0.96221 0.88392 1.22248 0.93350 1.00270 0.91565 1.61329 1.11944 1.12221 1.41026 1.22459 1.01237 0.87953 1.00668 1.21736 0.88516 1.02997 0.93756 1.20848 0.82272 0.83976 0.90269 1.90477 1.52708 1.51246 1.55846 1.41914 1.07117 1.54102 1.18012 1.19644 0.93230 1.37499 0.95900 0.90498 1.25981 0.95070 0.97327 1.02705 1.69658 1.03029 1.45225 1.38133 0.84963 0.77762 0.78353 0.77469 1.19681 1.19506 1.19997 1.21592 1.01480 0.99494 0.91516 1.22112 0.86695 0.99527 0.98657 1.61941 1.07917 1.55780 1.02642 1.22442 1.00935 0.97454 0.91731 0.92703 0.91733 0.91195 0.92655 0.91778 0.74528 0.92699 0.92917 0.88260 0.91940 0.94582 0.92566 0.91019 0.90875 0.86675 0.76930 0.91331 0.88444 0.92187 0.93527 0.89263 0.90772 0.90728 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.76 71.98 0.63 -1.05 16 2 C 0.09 1.07 2.44 44.94 0.11 1.18 16 3 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 4 C -0.09 -1.49 3.96 30.65 0.12 -1.37 16 5 C -0.10 -1.36 2.59 -11.46 -0.03 -1.39 16 6 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 7 C 0.51 10.86 7.16 87.66 0.63 11.49 16 8 O -0.59 -18.60 15.98 -3.05 -0.05 -18.65 16 9 N -0.71 -11.88 5.46 -463.06 -2.53 -14.41 16 10 C 0.13 2.95 5.60 86.38 0.48 3.43 16 11 C 0.05 1.10 5.07 86.30 0.44 1.54 16 12 N -0.54 -16.84 4.50 -927.02 -4.17 -21.01 16 13 C 0.02 0.80 8.96 127.69 1.14 1.94 16 14 C 0.06 2.00 5.45 85.56 0.47 2.46 16 15 C 0.44 20.68 7.47 87.66 0.66 21.34 16 16 O -0.62 -34.23 13.91 -3.05 -0.04 -34.27 16 17 N -0.57 -29.14 5.29 -306.99 -1.62 -30.76 16 18 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 22 Si 0.99 43.01 29.55 68.60 2.03 45.03 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.10 -1.04 5.25 30.65 0.16 -0.88 16 27 C 0.06 0.51 5.46 86.33 0.47 0.98 16 28 N -0.56 -6.66 4.75 -897.18 -4.26 -10.92 16 29 C 0.02 0.19 9.06 127.69 1.16 1.34 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.62 6.32 -2.39 -0.02 0.60 16 33 H 0.05 1.21 8.05 -2.39 -0.02 1.19 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.42 3.73 7.94 -92.71 -0.74 2.99 16 36 H 0.05 1.43 6.55 -2.39 -0.02 1.42 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.68 7.93 -2.39 -0.02 1.66 16 39 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 2.30 5.82 -2.38 -0.01 2.28 16 42 H 0.07 2.13 6.47 -2.39 -0.02 2.12 16 43 H 0.07 2.07 8.12 -2.38 -0.02 2.05 16 44 H 0.12 3.19 7.93 -2.39 -0.02 3.17 16 45 H 0.40 18.93 7.90 -92.71 -0.73 18.19 16 46 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 47 H 0.10 0.52 7.65 -2.39 -0.02 0.50 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 51 H 0.07 0.53 8.10 -2.38 -0.02 0.51 16 52 H 0.07 0.61 6.20 -2.38 -0.01 0.59 16 53 H 0.03 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -75.69 414.30 -3.21 -78.90 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.56 Total: 32.16 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 7.72 Total: 22.79 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -12.30 Total: -125.96 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.09 Total: -52.92 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.69 -3.21 -78.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258433.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.190 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds