Wall clock time and date at job start Tue Mar 31 2020 23:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35156 * 126.40092 * 2 1 4 4 N 1.30469 * 108.71469 * 179.97438 * 3 2 1 5 5 C 1.34172 * 109.26860 * 359.97438 * 4 3 2 6 6 S 1.76194 * 125.99261 * 179.97438 * 5 4 3 7 7 O 1.42094 * 106.40610 * 342.69172 * 6 5 4 8 8 O 1.42100 * 106.40541 * 209.76799 * 6 5 4 9 9 N 1.65603 * 107.21521 * 96.23058 * 6 5 4 10 10 C 1.38851 * 119.99948 * 296.08790 * 9 6 5 11 11 C 1.39568 * 119.84269 * 133.80739 * 10 9 6 12 12 C 1.36345 * 120.16039 * 180.25461 * 11 10 9 13 13 C 1.40892 * 119.83740 * 359.49972 * 12 11 10 14 14 C 1.41128 * 120.15878 * 180.25262 * 13 12 11 15 15 H 1.07994 * 120.00465 * 205.91388 * 14 13 12 16 16 C 1.39873 * 119.99860 * 25.91349 * 14 13 12 17 17 N 1.30903 * 119.99761 * 29.58627 * 16 14 13 18 18 Si 1.86796 * 119.99790 * 209.58675 * 16 14 13 19 19 H 1.48493 * 109.47089 * 94.98828 * 18 16 14 20 20 H 1.48509 * 109.46916 * 214.98584 * 18 16 14 21 21 H 1.48497 * 109.47288 * 334.98274 * 18 16 14 22 22 C 1.40893 * 119.68532 * 0.51920 * 13 12 11 23 23 C 1.36342 * 119.83861 * 359.73015 * 22 13 12 24 24 C 1.34797 * 108.01260 * 0.22918 * 5 4 3 25 25 Cl 1.73595 * 126.59729 * 179.75395 * 24 5 4 26 26 H 1.08996 * 109.47044 * 90.02419 * 1 2 3 27 27 H 1.09002 * 109.47696 * 210.02752 * 1 2 3 28 28 H 1.09005 * 109.47454 * 330.02957 * 1 2 3 29 29 H 1.08002 * 125.64843 * 359.97438 * 3 2 1 30 30 H 0.96999 * 120.00193 * 116.09263 * 9 6 5 31 31 H 1.07994 * 119.91799 * 359.97438 * 11 10 9 32 32 H 1.07996 * 120.07980 * 179.74904 * 12 11 10 33 33 H 0.96996 * 119.99740 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.08073 * 179.71348 * 22 13 12 35 35 H 1.07998 * 119.92222 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2670 1.0878 0.0000 4 7 3.5100 0.6915 0.0006 5 6 3.5471 -0.6497 0.0015 6 16 5.0007 -1.6454 0.0019 7 8 6.0672 -0.7989 -0.4045 8 8 4.6630 -2.8489 -0.6740 9 7 5.3084 -2.0629 1.5746 10 6 5.6179 -1.0806 2.5058 11 6 4.9962 -1.0877 3.7554 12 6 5.2914 -0.1232 4.6729 13 6 6.2343 0.8761 4.3608 14 6 6.5488 1.8745 5.3072 15 1 6.9124 2.8363 4.9771 16 6 6.3897 1.6184 6.6731 17 7 6.5226 0.3990 7.1301 18 14 5.9875 3.0165 7.8448 19 1 4.5181 3.0849 8.0478 20 1 6.6568 2.7775 9.1488 21 1 6.4680 4.2983 7.2695 22 6 6.8575 0.8772 3.0972 23 6 6.5488 -0.0906 2.1877 24 6 2.2772 -1.1018 -0.0036 25 17 1.7696 -2.7619 -0.0108 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3634 0.8903 0.5134 29 1 1.9342 2.1153 -0.0004 30 1 5.2725 -2.9937 1.8452 31 1 4.2764 -1.8564 3.9945 32 1 4.8066 -0.1276 5.6379 33 1 6.4126 0.2214 8.0773 34 1 7.5777 1.6428 2.8495 35 1 7.0254 -0.0908 1.2185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026542425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:21 Heat of formation + Delta-G solvation = 10.482753 kcal Electronic energy + Delta-G solvation = -24920.242504 eV Core-core repulsion = 21072.438558 eV Total energy + Delta-G solvation = -3847.803946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.039 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33284 -37.97856 -37.18196 -36.63264 -35.39615 -34.73186 -34.44599 -32.82324 -29.78043 -29.53617 -28.71911 -27.54318 -24.67381 -22.59799 -21.66454 -21.30435 -20.74053 -19.06372 -18.08844 -17.47318 -16.99477 -16.62064 -16.20051 -15.93196 -15.28352 -15.07281 -14.83627 -14.24395 -14.01446 -13.59810 -13.43109 -13.25557 -12.73232 -12.39647 -12.24411 -12.14351 -11.98506 -11.87472 -11.59504 -11.43994 -11.34378 -11.29125 -11.12926 -10.84594 -10.48143 -10.25506 -10.09683 -10.03330 -9.80374 -9.20272 -8.93030 -8.85353 -7.56582 -7.21459 -6.89840 -4.31998 0.76683 1.19716 1.29711 2.51686 2.57670 2.70507 3.03526 3.07707 3.09952 3.16918 3.56787 3.87803 4.12640 4.19722 4.39825 4.47783 4.55633 4.65418 4.93743 5.27567 5.60851 5.61716 5.77628 6.18856 6.26967 6.53441 6.66533 6.94207 7.02076 7.10895 7.23230 7.42419 7.56487 7.61376 7.98698 7.99368 8.07385 8.25913 8.55602 8.81745 8.93985 10.03247 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.003789 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.450381 B = 7388.936545 C = 8113.665568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.452 5.452 3 C 0.198 3.802 4 N -0.389 5.389 5 C -0.513 4.513 6 S 2.700 3.300 7 O -0.937 6.937 8 O -0.966 6.966 9 N -1.023 6.023 10 C -0.018 4.018 11 C -0.090 4.090 12 C -0.170 4.170 13 C 0.118 3.882 14 C -0.462 4.462 15 H 0.084 0.916 16 C 0.086 3.914 17 N -0.772 5.772 18 Si 0.899 3.101 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.259 1.259 22 C -0.211 4.211 23 C -0.089 4.089 24 C 0.114 3.886 25 Cl 0.022 6.978 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.224 0.776 30 H 0.411 0.589 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.283 0.717 34 H 0.099 0.901 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.961 -2.264 -9.092 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.135 5.135 3 C -0.087 4.087 4 N -0.104 5.104 5 C -0.724 4.724 6 S 2.786 3.214 7 O -0.926 6.926 8 O -0.956 6.956 9 N -0.776 5.776 10 C -0.114 4.114 11 C -0.112 4.112 12 C -0.191 4.191 13 C 0.115 3.885 14 C -0.491 4.491 15 H 0.102 0.898 16 C -0.136 4.136 17 N -0.395 5.395 18 Si 0.723 3.277 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.183 1.183 22 C -0.231 4.231 23 C -0.110 4.110 24 C -0.034 4.034 25 Cl 0.051 6.949 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.240 0.760 30 H 0.247 0.753 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.029 -2.115 -9.770 16.422 hybrid contribution -1.943 -0.114 1.247 2.312 sum -14.972 -2.229 -8.523 17.371 Atomic orbital electron populations 1.22272 0.75443 1.05791 1.04471 1.45599 1.08386 1.05900 1.53659 1.25399 0.85366 0.93163 1.04735 1.70540 1.18884 1.07179 1.13792 1.33683 1.14464 1.03232 1.20986 1.02507 0.73288 0.72623 0.72969 1.93535 1.50302 1.68372 1.80430 1.93567 1.85009 1.44537 1.72441 1.52314 1.82818 1.14576 1.27902 1.16690 1.06613 0.96251 0.91885 1.20351 0.98618 0.98457 0.93743 1.20644 1.01551 0.98072 0.98818 1.17661 0.88491 0.90886 0.91503 1.19570 1.38878 1.00345 0.90258 0.89829 1.25934 0.91842 0.96299 0.99502 1.69939 1.31241 1.21980 1.16333 0.86446 0.79662 0.82492 0.79104 1.19255 1.20294 1.18277 1.20644 1.04782 1.01656 0.96034 1.21018 0.95123 0.95145 0.99722 1.21587 0.90119 0.83713 1.07981 1.98444 1.91442 1.08250 1.96806 0.89576 0.89090 0.88143 0.75975 0.75281 0.89272 0.87757 0.90613 0.88298 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 11.05 59.85 0.66 1.04 16 2 N -0.45 -5.21 3.15 -122.46 -0.39 -5.60 16 3 C 0.20 2.53 12.57 -90.30 -1.13 1.39 16 4 N -0.39 -6.90 11.25 -13.80 -0.16 -7.06 16 5 C -0.51 -9.08 7.02 -17.75 -0.12 -9.21 16 6 S 2.70 50.64 5.73 -107.50 -0.62 50.03 16 7 O -0.94 -20.28 14.99 -57.17 -0.86 -21.13 16 8 O -0.97 -17.79 16.60 -57.17 -0.95 -18.74 16 9 N -1.02 -18.91 5.72 32.51 0.19 -18.73 16 10 C -0.02 -0.40 6.18 -83.69 -0.52 -0.92 16 11 C -0.09 -2.03 9.90 -39.77 -0.39 -2.42 16 12 C -0.17 -4.27 8.71 -39.26 -0.34 -4.61 16 13 C 0.12 3.08 5.53 -106.79 -0.59 2.49 16 14 C -0.46 -11.92 8.94 -37.87 -0.34 -12.26 16 15 H 0.08 2.09 7.99 -52.49 -0.42 1.67 16 16 C 0.09 2.07 4.81 -17.34 -0.08 1.99 16 17 N -0.77 -19.25 11.85 55.54 0.66 -18.59 16 18 Si 0.90 17.89 29.65 -169.99 -5.04 12.85 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.21 -5.27 9.74 -39.26 -0.38 -5.66 16 23 C -0.09 -2.12 9.11 -39.77 -0.36 -2.48 16 24 C 0.11 1.68 7.45 -16.52 -0.12 1.56 16 25 Cl 0.02 0.29 27.48 -51.86 -1.43 -1.14 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.51 7.93 -51.93 -0.41 0.09 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.22 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.41 6.37 8.95 -34.48 -0.31 6.06 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 2.65 6.69 -52.49 -0.35 2.29 16 33 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 34 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.13 2.95 5.63 -52.49 -0.30 2.65 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -33.15 334.72 -10.31 -43.46 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.04 Total: 8.70 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -3.73 Total: -29.09 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.30 Total: -49.97 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.81 Total: -39.87 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.04 Total: 12.85 kcal Atomic # 16 Polarization: 50.64 SS G_CDS: -0.62 Total: 50.03 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.43 Total: -1.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.15 -10.31 -43.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026542425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.943 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds