Wall clock time and date at job start Tue Mar 31 2020 23:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47457 * 239.99849 * 3 2 1 5 5 H 1.48503 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47631 * 119.99677 * 3 2 1 7 7 C 1.38799 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00512 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.80993 * 100.00235 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46980 * 179.97438 * 10 9 7 12 12 O 1.34923 * 119.99919 * 180.02562 * 11 10 9 13 13 N 1.29042 * 120.00508 * 0.02562 * 11 10 9 14 14 S 1.65600 * 120.00303 * 180.02562 * 13 11 10 15 15 O 1.42097 * 106.40408 * 66.45581 * 14 13 11 16 16 O 1.42099 * 106.39710 * 293.53346 * 14 13 11 17 17 C 1.76203 * 107.21504 * 179.97438 * 14 13 11 18 18 C 1.38256 * 120.02842 * 90.00227 * 17 14 13 19 19 C 1.38105 * 119.93154 * 180.02562 * 18 17 14 20 20 C 1.38497 * 120.21438 * 359.97035 * 19 18 17 21 21 C 1.38216 * 119.85394 * 0.02955 * 20 19 18 22 22 C 1.38096 * 120.03465 * 269.99408 * 17 14 13 23 23 C 1.51362 * 109.76055 * 180.02562 * 21 20 19 24 24 C 1.54347 * 105.17257 * 342.81694 * 23 21 20 25 25 C 1.51680 * 130.30808 * 179.85164 * 20 19 18 26 26 H 0.96997 * 120.00171 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47138 * 60.00810 * 10 9 7 28 28 H 1.08990 * 109.47480 * 300.00150 * 10 9 7 29 29 H 0.96706 * 114.00097 * 0.02562 * 12 11 10 30 30 H 1.07997 * 120.03503 * 0.02562 * 18 17 14 31 31 H 1.08004 * 119.89275 * 179.97438 * 19 18 17 32 32 H 1.08005 * 119.89126 * 0.02922 * 22 17 14 33 33 H 1.09002 * 110.30308 * 223.88922 * 23 21 20 34 34 H 1.09003 * 110.38787 * 101.77978 * 23 21 20 35 35 H 1.09002 * 110.82432 * 144.56982 * 24 23 21 36 36 H 1.09005 * 110.82182 * 267.92439 * 24 23 21 37 37 H 1.08998 * 110.25544 * 78.26854 * 25 20 19 38 38 H 1.09000 * 110.49386 * 316.01666 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6964 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2021 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9874 -5.3027 0.0048 12 8 2.8451 -6.3442 0.0064 13 7 0.7146 -5.5151 0.0050 14 16 0.1339 -7.0660 0.0077 15 8 0.5028 -7.6304 1.2585 16 8 0.5032 -7.6348 -1.2410 17 6 -1.6252 -6.9641 0.0079 18 6 -2.3162 -6.9262 -1.1890 19 6 -3.6949 -6.8459 -1.1865 20 6 -4.3884 -6.8037 0.0116 21 6 -3.6977 -6.8416 1.2081 22 6 -2.3150 -6.9223 1.2035 23 6 -4.6730 -6.7839 2.3642 24 6 -5.9933 -6.2682 1.7534 25 6 -5.8785 -6.7135 0.2801 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7306 0.8929 28 1 3.1245 -3.7321 -0.8871 29 1 3.7771 -6.0863 0.0066 30 1 -1.7784 -6.9594 -2.1249 31 1 -4.2340 -6.8159 -2.1219 32 1 -1.7745 -6.9516 2.1381 33 1 -4.3143 -6.0935 3.1276 34 1 -4.8160 -7.7770 2.7903 35 1 -6.8519 -6.7370 2.2342 36 1 -6.0557 -5.1823 1.8259 37 1 -6.3465 -7.6883 0.1424 38 1 -6.3404 -5.9753 -0.3755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048519710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:09 Heat of formation + Delta-G solvation = -76.591489 kcal Electronic energy + Delta-G solvation = -24327.624242 eV Core-core repulsion = 20581.628523 eV Total energy + Delta-G solvation = -3745.995718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.15100 -39.44954 -36.82902 -35.83851 -35.48835 -34.18999 -32.50149 -31.60800 -29.46729 -29.30231 -27.51400 -25.58172 -23.15219 -22.21012 -21.36874 -20.98411 -19.61367 -18.28524 -17.65830 -17.13604 -16.51332 -16.22591 -15.75441 -15.58172 -15.17270 -14.86989 -14.69082 -14.04348 -14.00712 -13.61851 -13.38386 -13.06604 -12.86305 -12.85267 -12.73165 -12.51654 -12.32640 -11.84974 -11.76977 -11.63595 -11.38217 -11.15730 -11.10000 -11.09172 -11.02239 -10.84838 -10.57258 -10.44794 -9.93050 -9.79031 -9.13224 -9.05708 -8.72482 -8.32257 -6.59094 -6.29348 -4.00872 0.58060 0.93497 1.32853 1.61800 2.90939 3.18720 3.19237 3.24035 3.28642 3.51838 3.66877 4.03004 4.09968 4.22061 4.32949 4.50324 4.76241 4.81570 4.88877 5.01321 5.05903 5.21685 5.26491 5.44533 5.47082 5.48662 5.51688 5.59786 5.60842 5.71120 5.79375 5.89549 5.97632 6.04839 6.15065 6.17972 6.45531 6.84524 6.92540 7.00843 7.51543 8.26213 9.16444 10.77420 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.003656 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.872491 B = 7657.147488 C = 9600.070842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.077 3.923 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.073 0.927 9 S -0.025 6.025 10 C -0.138 4.138 11 C 0.515 3.485 12 O -0.515 6.515 13 N -0.909 5.909 14 S 2.635 3.365 15 O -0.977 6.977 16 O -0.976 6.976 17 C -0.637 4.637 18 C -0.015 4.015 19 C -0.129 4.129 20 C -0.046 4.046 21 C -0.122 4.122 22 C -0.001 4.001 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.088 4.088 26 H 0.270 0.730 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.426 0.574 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 -12.809 1.225 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.133 4.133 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.697 4.697 8 H 0.092 0.908 9 S 0.201 5.799 10 C -0.289 4.289 11 C 0.293 3.707 12 O -0.312 6.312 13 N -0.767 5.767 14 S 2.730 3.270 15 O -0.966 6.966 16 O -0.965 6.965 17 C -0.725 4.725 18 C -0.034 4.034 19 C -0.148 4.148 20 C -0.047 4.047 21 C -0.122 4.122 22 C -0.020 4.020 23 C -0.119 4.119 24 C -0.159 4.159 25 C -0.125 4.125 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.284 0.716 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.677 -13.778 1.230 15.820 hybrid contribution 2.183 1.354 -0.087 2.571 sum -5.494 -12.424 1.143 13.632 Atomic orbital electron populations 1.69984 1.05961 1.27719 1.46481 1.24955 0.94978 0.98986 0.94340 0.86248 0.79287 0.81286 0.78831 1.19919 1.20831 1.19915 1.22943 0.95092 0.92119 1.59522 0.90847 1.85746 1.02514 0.94904 1.96723 1.23298 1.07282 0.92149 1.06185 1.23259 0.84921 0.88797 0.73718 1.84948 1.23838 1.36114 1.86287 1.74359 1.15442 1.46337 1.40586 1.03542 0.74975 0.74260 0.74177 1.93552 1.81430 1.77361 1.44237 1.93554 1.81387 1.77221 1.44379 1.30135 1.24731 1.18355 0.99313 1.20823 0.94397 0.91508 0.96677 1.20696 0.93772 1.02882 0.97433 1.20982 0.96138 0.94102 0.93456 1.20631 0.93441 1.02156 0.96019 1.20333 0.93320 0.91642 0.96750 1.21058 0.92900 1.02075 0.95847 1.22313 0.97225 1.01780 0.94548 1.21227 0.91446 1.02301 0.97484 0.92032 0.87125 0.87110 0.71587 0.84024 0.85199 0.84451 0.90104 0.90105 0.90386 0.90494 0.89748 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.82 13.22 55.49 0.73 -24.08 16 2 C 0.08 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.55 -14.43 9.50 30.94 0.29 -14.14 16 8 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16 9 S -0.02 -0.60 20.45 -107.50 -2.20 -2.80 16 10 C -0.14 -2.31 6.00 36.01 0.22 -2.09 16 11 C 0.51 8.51 7.92 -13.45 -0.11 8.41 16 12 O -0.51 -6.72 12.34 -17.21 -0.21 -6.93 16 13 N -0.91 -17.49 9.51 32.47 0.31 -17.18 16 14 S 2.64 49.41 4.78 -107.50 -0.51 48.89 16 15 O -0.98 -19.71 17.14 -58.37 -1.00 -20.71 16 16 O -0.98 -19.64 17.15 -58.38 -1.00 -20.64 16 17 C -0.64 -10.95 5.97 -39.63 -0.24 -11.19 16 18 C -0.01 -0.23 9.52 -39.62 -0.38 -0.61 16 19 C -0.13 -1.73 10.04 -39.53 -0.40 -2.13 16 20 C -0.05 -0.60 6.15 -104.05 -0.64 -1.24 16 21 C -0.12 -1.69 6.14 -104.21 -0.64 -2.33 16 22 C 0.00 -0.02 9.52 -39.54 -0.38 -0.39 16 23 C -0.08 -0.85 6.77 -26.85 -0.18 -1.03 16 24 C -0.12 -1.05 7.07 -25.32 -0.18 -1.23 16 25 C -0.09 -0.81 6.80 -26.70 -0.18 -0.99 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.11 1.59 8.14 -51.91 -0.42 1.16 16 28 H 0.11 1.59 8.14 -51.92 -0.42 1.16 16 29 H 0.43 2.42 8.82 45.56 0.40 2.83 16 30 H 0.14 2.04 7.62 -52.49 -0.40 1.64 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.14 2.07 7.61 -52.48 -0.40 1.67 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -37.25 355.71 -10.19 -47.44 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.75 Total: 2.29 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.90 Total: -26.98 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.04 Total: -41.26 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.21 Total: -48.28 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 48.80 SS G_CDS: -2.71 Total: 46.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.25 -10.19 -47.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048519710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.147 kcal (2) G-P(sol) polarization free energy of solvation -37.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds