Wall clock time and date at job start Tue Mar 31 2020 23:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35916 * 116.99779 * 2 1 4 4 C 1.38718 * 120.06102 * 359.72767 * 3 2 1 5 5 C 1.38143 * 119.95440 * 180.27074 * 4 3 2 6 6 C 1.38284 * 120.07184 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94105 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47466 * 270.02443 * 7 6 5 9 9 C 1.50701 * 109.47466 * 179.97438 * 8 7 6 10 10 O 1.21298 * 119.99456 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00197 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99786 * 0.02562 * 11 9 8 13 13 C 1.37094 * 120.00100 * 179.97438 * 11 9 8 14 14 H 1.08008 * 119.99726 * 24.39474 * 13 11 9 15 15 C 1.38947 * 120.00313 * 204.39771 * 13 11 9 16 16 N 1.31411 * 120.00131 * 12.63429 * 15 13 11 17 17 Si 1.86802 * 120.00029 * 192.64129 * 15 13 11 18 18 H 1.48498 * 109.47274 * 89.99880 * 17 15 13 19 19 H 1.48511 * 109.46835 * 209.99672 * 17 15 13 20 20 H 1.48493 * 109.47348 * 329.99198 * 17 15 13 21 21 C 1.38243 * 120.11667 * 0.04403 * 6 5 4 22 22 C 1.38237 * 120.04749 * 359.95383 * 21 6 5 23 23 Br 1.89101 * 120.03651 * 180.02562 * 22 21 6 24 24 H 1.08995 * 109.47375 * 59.99729 * 1 2 3 25 25 H 1.09004 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46996 * 299.99929 * 1 2 3 27 27 H 1.08002 * 120.02357 * 0.25417 * 4 3 2 28 28 H 1.07995 * 119.96551 * 179.97438 * 5 4 3 29 29 H 1.09005 * 109.47078 * 30.02685 * 7 6 5 30 30 H 1.09003 * 109.47082 * 150.02297 * 7 6 5 31 31 H 1.08999 * 109.46762 * 300.00062 * 8 7 6 32 32 H 1.09003 * 109.47089 * 59.99858 * 8 7 6 33 33 H 1.08999 * 109.47449 * 85.86436 * 12 11 9 34 34 H 1.09006 * 109.46676 * 205.85999 * 12 11 9 35 35 H 1.08998 * 109.47623 * 325.85760 * 12 11 9 36 36 H 0.96997 * 120.00331 * 179.97438 * 16 15 13 37 37 H 1.08005 * 119.97502 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2917 2.3752 -0.0057 5 6 1.9211 3.6049 -0.0113 6 6 3.3021 3.6765 -0.0108 7 6 3.9856 5.0195 -0.0164 8 6 4.2174 5.4679 -1.4607 9 6 4.9004 6.8113 -1.4663 10 8 5.1744 7.3566 -0.4180 11 7 5.2067 7.4066 -2.6359 12 6 4.8753 6.7482 -3.9019 13 6 5.8276 8.6289 -2.6409 14 1 6.4157 8.9394 -1.7899 15 6 5.7002 9.4684 -3.7408 16 7 4.7982 9.2126 -4.6616 17 14 6.8112 10.9605 -3.9106 18 1 8.0390 10.5813 -4.6549 19 1 6.0941 12.0299 -4.6507 20 1 7.1835 11.4566 -2.5615 21 6 4.0567 2.5182 -0.0055 22 6 3.4319 1.2851 0.0002 23 35 4.4644 -0.2991 0.0082 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2131 2.3202 -0.0060 28 1 1.3340 4.5113 -0.0162 29 1 3.3571 5.7492 0.4942 30 1 4.9435 4.9419 0.4981 31 1 4.8459 4.7382 -1.9712 32 1 3.2595 5.5456 -1.9751 33 1 3.8504 6.9927 -4.1812 34 1 5.5561 7.0933 -4.6800 35 1 4.9727 5.6687 -3.7865 36 1 4.7090 9.7988 -5.4293 37 1 5.1351 2.5768 -0.0055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060297356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:36 Heat of formation + Delta-G solvation = -62.341835 kcal Electronic energy + Delta-G solvation = -20874.341644 eV Core-core repulsion = 17469.739573 eV Total energy + Delta-G solvation = -3404.602070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26328 -40.35873 -38.76685 -36.69261 -34.61572 -33.60662 -33.10557 -30.70786 -30.09457 -28.45224 -27.91013 -26.54724 -24.81330 -23.48800 -21.96566 -20.43495 -19.15366 -18.86144 -17.89346 -17.52061 -16.75052 -16.67416 -16.31106 -15.91068 -15.88672 -15.33080 -14.89776 -14.60085 -14.51361 -14.16630 -13.96492 -13.44342 -13.24848 -13.19564 -13.01074 -12.84793 -12.61898 -12.46099 -12.33451 -12.12849 -12.01490 -11.99133 -11.71988 -11.64067 -11.15685 -10.98591 -10.32981 -9.85995 -9.64591 -9.10178 -8.32854 -5.97864 0.08619 0.28141 0.68890 1.38042 1.41335 1.53424 2.06941 2.26976 2.29071 2.54375 3.10091 3.13971 3.71337 3.80377 3.96380 4.14648 4.20228 4.30246 4.39466 4.41894 4.43323 4.48262 4.59977 4.71434 4.77739 4.85322 4.98000 5.01850 5.09223 5.19498 5.27621 5.38105 5.45853 5.58717 5.65108 6.12809 6.28733 6.50709 7.19079 7.50642 8.06983 8.70231 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.002482 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.927348 B =11278.905200 C =11800.921638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.142 3.858 4 C -0.195 4.195 5 C -0.060 4.060 6 C -0.111 4.111 7 C -0.047 4.047 8 C -0.109 4.109 9 C 0.436 3.564 10 O -0.634 6.634 11 N -0.467 5.467 12 C 0.122 3.878 13 C -0.345 4.345 14 H 0.069 0.931 15 C -0.003 4.003 16 N -0.897 5.897 17 Si 0.988 3.012 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.276 1.276 21 C -0.055 4.055 22 C -0.140 4.140 23 Br -0.044 7.044 24 H 0.068 0.932 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.164 0.836 28 H 0.147 0.853 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.273 0.727 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -21.626 5.691 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.094 3.906 4 C -0.214 4.214 5 C -0.078 4.078 6 C -0.112 4.112 7 C -0.085 4.085 8 C -0.149 4.149 9 C 0.227 3.773 10 O -0.522 6.522 11 N -0.186 5.186 12 C -0.021 4.021 13 C -0.473 4.473 14 H 0.087 0.913 15 C -0.205 4.205 16 N -0.536 5.536 17 Si 0.811 3.189 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.075 4.075 22 C -0.220 4.220 23 Br 0.041 6.959 24 H 0.087 0.913 25 H 0.138 0.862 26 H 0.087 0.913 27 H 0.182 0.818 28 H 0.165 0.835 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.967 -22.082 5.969 24.569 hybrid contribution 0.172 1.449 -0.265 1.483 sum -8.796 -20.633 5.705 23.143 Atomic orbital electron populations 1.23423 0.75995 1.05832 1.02622 1.86157 1.23716 1.25648 1.87965 1.18749 0.90603 0.85869 0.95415 1.21466 1.01498 0.90705 1.07708 1.21269 0.93626 0.98451 0.94503 1.19772 0.94143 0.94075 1.03254 1.20091 1.00648 0.92484 0.95311 1.21472 1.01542 0.93039 0.98857 1.21187 0.83046 0.89770 0.83323 1.90472 1.59901 1.69045 1.32758 1.43887 1.51534 1.17536 1.05632 1.21416 1.00608 0.94343 0.85760 1.19607 1.28577 0.94760 1.04376 0.91257 1.26073 0.97613 1.01091 0.95685 1.70056 1.31742 1.39814 1.11967 0.85018 0.78272 0.77339 0.78226 1.19069 1.19836 1.20135 1.20960 1.00741 0.89464 0.96331 1.21121 0.91836 0.93000 1.16019 1.96647 1.69561 1.31810 1.97925 0.91344 0.86236 0.91284 0.81834 0.83480 0.91176 0.91510 0.88520 0.88662 0.93837 0.92628 0.91507 0.91749 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.22 9.83 -92.61 -0.91 -7.13 16 3 C 0.14 3.06 6.68 22.52 0.15 3.21 16 4 C -0.19 -3.56 9.04 22.36 0.20 -3.36 16 5 C -0.06 -1.26 9.69 22.26 0.22 -1.05 16 6 C -0.11 -2.77 5.13 -19.85 -0.10 -2.87 16 7 C -0.05 -1.45 4.63 29.85 0.14 -1.31 16 8 C -0.11 -3.74 4.29 29.85 0.13 -3.61 16 9 C 0.44 21.18 7.63 87.66 0.67 21.85 16 10 O -0.63 -35.69 15.70 -3.08 -0.05 -35.74 16 11 N -0.47 -24.26 3.01 -658.89 -1.98 -26.24 16 12 C 0.12 5.35 8.44 127.77 1.08 6.43 16 13 C -0.35 -19.86 9.24 84.04 0.78 -19.08 16 14 H 0.07 4.27 7.45 -2.91 -0.02 4.25 16 15 C 0.00 -0.16 5.04 84.93 0.43 0.27 16 16 N -0.90 -47.82 10.83 21.66 0.23 -47.58 16 17 Si 0.99 42.80 29.57 68.60 2.03 44.83 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 C -0.06 -1.36 9.44 22.27 0.21 -1.15 16 22 C -0.14 -3.37 6.24 22.40 0.14 -3.23 16 23 Br -0.04 -1.01 33.16 -20.37 -0.68 -1.69 16 24 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 25 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 27 H 0.16 1.94 6.30 -2.91 -0.02 1.92 16 28 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.07 2.26 8.04 -2.38 -0.02 2.25 16 30 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 31 H 0.10 2.94 7.41 -2.39 -0.02 2.92 16 32 H 0.10 2.97 8.11 -2.39 -0.02 2.95 16 33 H 0.04 1.95 7.83 -2.39 -0.02 1.93 16 34 H 0.05 2.61 6.80 -2.38 -0.02 2.60 16 35 H 0.07 2.34 6.61 -2.39 -0.02 2.32 16 36 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 37 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -69.61 333.19 4.87 -64.73 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.08 Total: 11.47 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 5.15 Total: -2.64 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.75 Total: -73.83 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.96 Total: -42.87 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.68 Total: -1.69 kcal Total: -69.61 4.87 -64.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060297356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.392 kcal (2) G-P(sol) polarization free energy of solvation -69.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds