Wall clock time and date at job start Tue Mar 31 2020 22:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47324 * 2 1 4 4 C 1.37096 * 120.00170 * 263.56171 * 3 2 1 5 5 H 1.07994 * 120.00071 * 188.39331 * 4 3 2 6 6 C 1.38953 * 119.99940 * 8.38214 * 4 3 2 7 7 N 1.31413 * 119.99629 * 25.17494 * 6 4 3 8 8 Si 1.86802 * 120.00355 * 205.16716 * 6 4 3 9 9 H 1.48499 * 109.46618 * 84.98973 * 8 6 4 10 10 H 1.48499 * 109.47316 * 204.99174 * 8 6 4 11 11 H 1.48496 * 109.46926 * 324.99337 * 8 6 4 12 12 C 1.34771 * 120.00172 * 83.55773 * 3 2 1 13 13 O 1.21293 * 120.00380 * 180.02562 * 12 3 2 14 14 C 1.50709 * 119.99781 * 0.02562 * 12 3 2 15 15 C 1.50701 * 109.47120 * 179.97438 * 14 12 3 16 16 C 1.38163 * 119.97851 * 99.72388 * 15 14 12 17 17 C 1.38708 * 119.95713 * 179.75054 * 16 15 14 18 18 O 1.35913 * 120.04641 * 180.23365 * 17 16 15 19 19 C 1.42901 * 116.99622 * 180.31493 * 18 17 16 20 20 C 1.38748 * 119.90398 * 0.54290 * 17 16 15 21 21 C 1.38118 * 119.95534 * 359.71494 * 20 17 16 22 22 C 1.38326 * 119.97777 * 280.00268 * 15 14 12 23 23 Br 1.89098 * 119.95183 * 359.97438 * 22 15 14 24 24 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46953 * 300.00268 * 1 2 3 26 26 H 1.09003 * 109.47427 * 59.99963 * 1 2 3 27 27 H 1.09001 * 109.46937 * 240.00208 * 2 1 3 28 28 H 1.09003 * 109.47427 * 120.00037 * 2 1 3 29 29 H 0.97002 * 119.99576 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47119 * 299.99794 * 14 12 3 31 31 H 1.09000 * 109.46906 * 60.00045 * 14 12 3 32 32 H 1.08005 * 120.02048 * 359.97438 * 16 15 14 33 33 H 1.09003 * 109.46695 * 179.97438 * 19 18 17 34 34 H 1.08991 * 109.47190 * 299.99654 * 19 18 17 35 35 H 1.09000 * 109.47349 * 60.00101 * 19 18 17 36 36 H 1.07999 * 120.02078 * 179.68199 * 20 17 16 37 37 H 1.08005 * 119.97661 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9831 -1.1798 5 1 2.8579 2.9477 -1.1694 6 6 2.1067 1.3520 -2.3889 7 7 1.1281 0.4789 -2.4731 8 14 3.1403 1.7447 -3.8945 9 1 4.3644 0.9041 -3.8874 10 1 2.3535 1.4633 -5.1221 11 1 3.5245 3.1789 -3.8707 12 6 2.1195 2.0602 1.1598 13 8 2.5234 3.2039 1.1597 14 6 1.7308 1.3984 2.4568 15 6 1.9366 2.3643 3.5950 16 6 0.8606 3.0576 4.1152 17 6 1.0497 3.9427 5.1663 18 8 -0.0082 4.6222 5.6825 19 6 0.2617 5.5221 6.7593 20 6 2.3213 4.1383 5.6857 21 6 3.3951 3.4472 5.1593 22 6 3.2034 2.5605 4.1146 23 35 4.6753 1.6156 3.3959 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9429 0.0380 -3.3171 30 1 0.6821 1.1042 2.4145 31 1 2.3499 0.5151 2.6138 32 1 -0.1276 2.9078 3.7060 33 1 -0.6662 5.9980 7.0762 34 1 0.6913 4.9700 7.5951 35 1 0.9660 6.2849 6.4274 36 1 2.4715 4.8308 6.5007 37 1 4.3852 3.5995 5.5631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159737081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:46 Heat of formation + Delta-G solvation = -29.128411 kcal Electronic energy + Delta-G solvation = -21837.028623 eV Core-core repulsion = 18433.866795 eV Total energy + Delta-G solvation = -3403.161828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18115 -38.68860 -37.34916 -34.97853 -32.50314 -31.63150 -31.60200 -29.42305 -29.19939 -27.28529 -27.02987 -24.54457 -22.49761 -22.09900 -21.23112 -18.98751 -17.50084 -16.79400 -16.40211 -16.08814 -15.75607 -15.66339 -14.57412 -14.45887 -14.15277 -13.82169 -13.49127 -13.09363 -12.99590 -12.69597 -12.28323 -12.11786 -11.88420 -11.68523 -11.51502 -11.32263 -11.10558 -11.03261 -10.84143 -10.67291 -10.30273 -10.07975 -10.05278 -9.83288 -9.72001 -8.83581 -8.82950 -8.23793 -7.94065 -7.68750 -6.30284 -3.70491 1.35711 1.41299 2.04389 3.20131 3.21264 3.29854 3.34823 3.72858 3.96453 4.19584 4.73313 4.81904 4.98352 5.00904 5.02934 5.12009 5.25515 5.32192 5.41741 5.53716 5.77721 5.87621 5.99229 6.02338 6.16363 6.27770 6.32530 6.53344 6.58010 6.66449 6.76157 6.80198 7.30864 7.36207 7.52135 7.78236 8.15750 8.57903 9.25601 9.51605 10.07507 10.70767 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.004358 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.480990 B = 6424.039898 C = 7376.087534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.119 3.881 3 N -0.441 5.441 4 C -0.302 4.302 5 H 0.104 0.896 6 C 0.029 3.971 7 N -0.868 5.868 8 Si 0.916 3.084 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.455 3.545 13 O -0.581 6.581 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.138 4.138 17 C 0.139 3.861 18 O -0.315 6.315 19 C 0.027 3.973 20 C -0.213 4.213 21 C -0.053 4.053 22 C -0.107 4.107 23 Br -0.048 7.048 24 H 0.037 0.963 25 H 0.023 0.977 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 0.891 16.622 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 N -0.160 5.160 4 C -0.429 4.429 5 H 0.121 0.879 6 C -0.173 4.173 7 N -0.508 5.508 8 Si 0.743 3.257 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.243 3.757 13 O -0.465 6.465 14 C -0.149 4.149 15 C 0.022 3.978 16 C -0.157 4.157 17 C 0.093 3.907 18 O -0.229 6.229 19 C -0.068 4.068 20 C -0.233 4.233 21 C -0.073 4.073 22 C -0.187 4.187 23 Br 0.037 6.963 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.687 0.972 16.117 16.234 hybrid contribution 0.183 0.357 -0.464 0.614 sum 1.871 1.329 15.653 15.820 Atomic orbital electron populations 1.22137 0.96789 0.99813 1.01990 1.21452 0.94404 0.83834 1.00761 1.43734 1.55760 1.11148 1.05329 1.19704 1.35679 1.05441 0.82071 0.87874 1.25143 0.96064 0.97312 0.98772 1.70113 1.25081 1.29037 1.26568 0.86099 0.80034 0.79156 0.80408 1.20457 1.21218 1.19563 1.19429 0.85277 0.86840 0.84194 1.90539 1.51311 1.18070 1.86570 1.20897 1.03804 0.97728 0.92487 1.19152 0.90783 0.94586 0.93316 1.20220 0.99867 0.98503 0.97152 1.18978 0.86252 0.92141 0.93306 1.86085 1.32336 1.54888 1.49571 1.23047 1.03193 0.92257 0.88280 1.21064 0.92013 1.05505 1.04716 1.20763 0.98882 0.93600 0.94077 1.21481 0.92466 1.03679 1.01043 1.96647 1.39931 1.73845 1.85850 0.94363 0.95826 0.88924 0.87996 0.95055 0.92400 0.88805 0.88620 0.84585 0.88346 0.92701 0.92592 0.85109 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.64 37.15 0.36 -2.71 16 2 C 0.12 2.64 5.07 -4.04 -0.02 2.62 16 3 N -0.44 -11.14 2.64 -114.81 -0.30 -11.45 16 4 C -0.30 -8.33 9.43 -14.93 -0.14 -8.47 16 5 H 0.10 3.05 7.31 -52.49 -0.38 2.67 16 6 C 0.03 0.76 4.90 -17.47 -0.09 0.68 16 7 N -0.87 -22.11 8.65 55.50 0.48 -21.63 16 8 Si 0.92 20.64 29.62 -169.99 -5.04 15.61 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.46 11.02 7.17 -10.98 -0.08 10.94 16 13 O -0.58 -16.03 15.54 5.55 0.09 -15.95 16 14 C -0.11 -2.08 3.86 -29.03 -0.11 -2.19 16 15 C 0.02 0.44 4.43 -104.62 -0.46 -0.03 16 16 C -0.14 -2.32 9.61 -39.44 -0.38 -2.70 16 17 C 0.14 2.07 6.69 -39.22 -0.26 1.81 16 18 O -0.32 -4.21 10.50 -19.47 -0.20 -4.42 16 19 C 0.03 0.23 9.81 101.05 0.99 1.23 16 20 C -0.21 -2.84 9.04 -39.44 -0.36 -3.20 16 21 C -0.05 -0.77 9.78 -39.58 -0.39 -1.16 16 22 C -0.11 -1.84 6.10 -39.50 -0.24 -2.08 16 23 Br -0.05 -0.82 31.66 -68.01 -2.15 -2.97 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.02 0.44 6.45 -51.93 -0.34 0.11 16 26 H 0.09 2.20 6.38 -51.93 -0.33 1.87 16 27 H 0.10 2.44 5.83 -51.93 -0.30 2.14 16 28 H 0.03 0.60 6.71 -51.93 -0.35 0.26 16 29 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 30 H 0.09 1.64 6.27 -51.93 -0.33 1.31 16 31 H 0.10 1.70 6.41 -51.93 -0.33 1.37 16 32 H 0.14 2.16 8.04 -52.48 -0.42 1.73 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 35 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 36 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 37 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -30.85 323.13 -7.75 -38.60 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.31 Total: 2.61 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.18 Total: -5.27 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.18 Total: -33.08 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.12 Total: -20.36 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.04 Total: 15.61 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -2.15 Total: -2.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.85 -7.75 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159737081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.473 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds