Wall clock time and date at job start Tue Mar 31 2020 23:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 C 1.50695 * 109.47343 * 239.99227 * 2 1 3 5 5 H 1.08002 * 120.00288 * 245.16848 * 4 2 1 6 6 C 1.37879 * 119.99681 * 65.16508 * 4 2 1 7 7 N 1.31516 * 120.00175 * 195.92188 * 6 4 2 8 8 Si 1.86800 * 119.99842 * 15.92864 * 6 4 2 9 9 H 1.48498 * 109.47036 * 95.34511 * 8 6 4 10 10 H 1.48506 * 109.46916 * 215.33991 * 8 6 4 11 11 H 1.48500 * 109.47384 * 335.34036 * 8 6 4 12 12 N 1.46508 * 109.46836 * 119.99549 * 2 1 3 13 13 S 1.65603 * 119.99758 * 264.82527 * 12 2 1 14 14 O 1.42095 * 106.40112 * 309.72966 * 13 12 2 15 15 O 1.42105 * 106.39869 * 176.81252 * 13 12 2 16 16 C 1.76198 * 107.21928 * 63.27371 * 13 12 2 17 17 C 1.38262 * 119.97450 * 244.33401 * 16 13 12 18 18 C 1.38179 * 120.02600 * 180.27310 * 17 16 13 19 19 C 1.38474 * 119.97395 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.02688 * 180.02562 * 19 18 17 21 21 C 1.38442 * 119.95179 * 359.97438 * 19 18 17 22 22 C 1.38222 * 119.97275 * 64.60486 * 16 13 12 23 23 C 1.50703 * 119.99055 * 359.75447 * 22 16 13 24 24 F 1.39899 * 109.47287 * 185.13030 * 23 22 16 25 25 F 1.39905 * 109.46599 * 305.13032 * 23 22 16 26 26 F 1.39901 * 109.47383 * 65.12603 * 23 22 16 27 27 H 1.09000 * 109.47153 * 303.32310 * 1 2 3 28 28 H 1.08996 * 109.47277 * 63.32435 * 1 2 3 29 29 H 1.09007 * 109.47097 * 183.32865 * 1 2 3 30 30 H 0.96997 * 120.00088 * 180.02562 * 7 6 4 31 31 H 0.97002 * 119.99836 * 84.83080 * 12 2 1 32 32 H 1.08001 * 119.98853 * 0.27717 * 17 16 13 33 33 H 1.07998 * 120.01110 * 179.97438 * 18 17 16 34 34 H 1.07992 * 120.01548 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5827 -1.6347 -1.1333 6 6 1.7893 -0.1808 -2.4798 7 7 1.9391 -0.9282 -3.5515 8 14 1.2474 1.5987 -2.6505 9 1 2.4323 2.4536 -2.9162 10 1 0.2882 1.7181 -3.7779 11 1 0.5911 2.0392 -1.3934 12 7 2.0183 -0.6906 1.1963 13 16 2.4162 0.1778 2.5491 14 8 3.2825 1.2182 2.1176 15 8 2.7764 -0.7713 3.5435 16 6 0.9437 0.9603 3.1184 17 6 0.8499 2.3397 3.1175 18 6 -0.3022 2.9547 3.5690 19 6 -1.3628 2.1889 4.0230 20 9 -2.4899 2.7890 4.4643 21 6 -1.2678 0.8077 4.0235 22 6 -0.1145 0.1948 3.5709 23 6 -0.0105 -1.3086 3.5718 24 9 -1.2363 -1.8607 3.9589 25 9 0.3166 -1.7541 2.2866 26 9 0.9849 -1.7067 4.4707 27 1 -0.3633 0.5646 0.8587 28 1 -0.3633 0.4613 -0.9182 29 1 -0.3634 -1.0260 0.0597 30 1 1.7685 -0.5554 -4.4306 31 1 2.1086 -1.6564 1.1959 32 1 1.6773 2.9369 2.7637 33 1 -0.3751 4.0322 3.5686 34 1 -2.0944 0.2094 4.3770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171424265.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:40 Heat of formation + Delta-G solvation = -210.516928 kcal Electronic energy + Delta-G solvation = -29779.374539 eV Core-core repulsion = 24919.501462 eV Total energy + Delta-G solvation = -4859.873078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.23823 -49.49317 -47.80317 -47.54946 -39.56715 -37.00741 -35.75749 -35.61496 -32.57911 -32.27325 -31.39018 -29.21996 -26.52241 -25.24703 -23.75815 -22.69803 -21.03757 -19.57916 -19.15364 -18.70519 -18.49818 -17.81743 -17.33362 -16.82093 -16.60496 -16.21320 -16.08829 -15.65294 -15.02372 -14.79743 -14.55758 -14.38925 -14.13909 -13.86928 -13.82825 -13.75427 -13.64823 -13.41549 -13.15538 -12.97009 -12.79969 -12.50634 -12.06521 -11.97706 -11.81546 -11.70537 -11.64671 -11.17430 -11.06039 -10.79572 -10.38415 -9.83593 -9.74477 -9.58358 -9.52876 -8.69816 -8.55044 -6.24223 -4.20805 0.03147 0.47782 0.61341 2.35684 2.67028 3.18647 3.25706 3.28789 3.31721 3.40039 3.66089 3.82396 3.86093 4.19130 4.28979 4.31941 4.37838 4.56380 4.91179 4.98858 5.07185 5.14636 5.35617 5.48652 5.53799 5.91628 6.15570 6.22680 6.32265 6.48395 6.98777 7.17819 7.39152 7.79855 8.35392 8.82654 9.37943 10.88225 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.005817 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.954714 B = 4812.583129 C = 5429.600403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.245 3.755 3 H 0.044 0.956 4 C -0.526 4.526 5 H 0.084 0.916 6 C 0.082 3.918 7 N -0.883 5.883 8 Si 0.859 3.141 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.255 1.255 12 N -1.080 6.080 13 S 2.670 3.330 14 O -0.948 6.948 15 O -0.952 6.952 16 C -0.641 4.641 17 C 0.008 3.992 18 C -0.144 4.144 19 C 0.148 3.852 20 F -0.125 7.125 21 C -0.129 4.129 22 C -0.054 4.054 23 C 0.480 3.520 24 F -0.173 7.173 25 F -0.150 7.150 26 F -0.140 7.140 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.267 0.733 31 H 0.420 0.580 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 5.479 15.586 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.139 3.861 3 H 0.062 0.938 4 C -0.565 4.565 5 H 0.102 0.898 6 C -0.123 4.123 7 N -0.519 5.519 8 Si 0.685 3.315 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.179 1.179 12 N -0.845 5.845 13 S 2.754 3.246 14 O -0.938 6.938 15 O -0.942 6.942 16 C -0.723 4.723 17 C -0.011 4.011 18 C -0.163 4.163 19 C 0.129 3.871 20 F -0.103 7.103 21 C -0.149 4.149 22 C -0.056 4.056 23 C 0.425 3.575 24 F -0.154 7.154 25 F -0.132 7.132 26 F -0.121 7.121 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.593 5.726 15.798 18.051 hybrid contribution -1.429 0.664 -0.240 1.594 sum -8.022 6.390 15.558 18.634 Atomic orbital electron populations 1.22657 0.98945 1.01350 0.99337 1.18911 0.90334 0.93078 0.83740 0.93849 1.20907 1.37267 1.10392 0.87945 0.89840 1.24827 0.94473 0.97386 0.95597 1.69946 1.48073 1.35412 0.98479 0.87246 0.79169 0.86531 0.78589 1.20072 1.20955 1.17918 1.55429 1.83134 1.19660 1.26238 1.02802 0.73922 0.74227 0.73681 1.93590 1.60163 1.58423 1.81607 1.93679 1.81507 1.60365 1.58643 1.31387 1.21732 1.05388 1.13808 1.20943 0.97614 0.91809 0.90704 1.21511 0.92718 1.01738 1.00350 1.17663 0.83115 0.90528 0.95834 1.91572 1.48762 1.83557 1.86382 1.20994 0.98633 0.93713 1.01538 1.19368 0.95061 0.91505 0.99688 1.18566 0.75152 0.87843 0.75985 1.93179 1.44001 1.87154 1.91105 1.93381 1.91793 1.90777 1.37205 1.93433 1.59851 1.91684 1.67111 0.96106 0.92388 0.92043 0.92342 0.74209 0.81640 0.82747 0.82398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.00 37.16 0.30 -2.91 16 2 C 0.25 5.29 2.41 -69.08 -0.17 5.13 16 3 H 0.04 0.96 6.09 -51.93 -0.32 0.64 16 4 C -0.53 -13.66 9.18 -34.44 -0.32 -13.98 16 5 H 0.08 2.33 8.05 -52.49 -0.42 1.91 16 6 C 0.08 2.20 5.34 -17.82 -0.10 2.10 16 7 N -0.88 -25.38 13.96 55.43 0.77 -24.60 16 8 Si 0.86 19.79 25.80 -169.99 -4.39 15.41 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.25 -5.36 5.54 56.52 0.31 -5.05 16 12 N -1.08 -20.33 3.36 -5.88 -0.02 -20.35 16 13 S 2.67 46.24 4.90 -107.50 -0.53 45.71 16 14 O -0.95 -18.31 16.38 -57.17 -0.94 -19.25 16 15 O -0.95 -17.29 14.45 -57.17 -0.83 -18.11 16 16 C -0.64 -9.27 4.80 -39.58 -0.19 -9.46 16 17 C 0.01 0.10 9.55 -39.59 -0.38 -0.28 16 18 C -0.14 -1.43 10.03 -39.52 -0.40 -1.83 16 19 C 0.15 1.57 7.30 -39.42 -0.29 1.28 16 20 F -0.12 -1.27 17.27 2.25 0.04 -1.23 16 21 C -0.13 -1.46 9.41 -39.51 -0.37 -1.83 16 22 C -0.05 -0.73 4.91 -104.63 -0.51 -1.24 16 23 C 0.48 6.88 2.79 36.01 0.10 6.98 16 24 F -0.17 -2.21 15.99 2.25 0.04 -2.18 16 25 F -0.15 -2.34 11.31 2.25 0.03 -2.32 16 26 F -0.14 -2.18 14.10 2.25 0.03 -2.15 16 27 H 0.02 0.34 6.59 -51.93 -0.34 0.00 16 28 H 0.06 1.18 5.11 -51.93 -0.27 0.91 16 29 H 0.06 1.18 7.49 -51.93 -0.39 0.79 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.42 7.46 7.70 -34.48 -0.27 7.20 16 32 H 0.17 1.77 7.33 -52.49 -0.38 1.39 16 33 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.16 1.45 7.17 -52.49 -0.38 1.07 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -30.34 302.88 -5.95 -36.29 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.41 Total: 4.25 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.32 Total: -16.04 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.75 Total: -44.95 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.76 Total: -37.36 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.13 Total: -7.87 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.39 Total: 15.41 kcal Atomic # 16 Polarization: 46.24 SS G_CDS: -0.53 Total: 45.71 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.34 -5.95 -36.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171424265.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.229 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds