Wall clock time and date at job start Tue Mar 31 2020 23:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 C 1.50695 * 109.47343 * 239.99227 * 2 1 3 5 5 H 1.08002 * 120.00288 * 245.16848 * 4 2 1 6 6 C 1.37879 * 119.99681 * 65.16508 * 4 2 1 7 7 N 1.31516 * 120.00175 * 195.92188 * 6 4 2 8 8 Si 1.86800 * 119.99842 * 15.92864 * 6 4 2 9 9 H 1.48498 * 109.47036 * 95.34511 * 8 6 4 10 10 H 1.48506 * 109.46916 * 215.33991 * 8 6 4 11 11 H 1.48500 * 109.47384 * 335.34036 * 8 6 4 12 12 N 1.46508 * 109.46836 * 119.99549 * 2 1 3 13 13 S 1.65603 * 119.99758 * 264.82527 * 12 2 1 14 14 O 1.42095 * 106.40112 * 309.72966 * 13 12 2 15 15 O 1.42105 * 106.39869 * 176.81252 * 13 12 2 16 16 C 1.76198 * 107.21928 * 63.27371 * 13 12 2 17 17 C 1.38262 * 119.97450 * 244.33401 * 16 13 12 18 18 C 1.38179 * 120.02600 * 180.27310 * 17 16 13 19 19 C 1.38474 * 119.97395 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.02688 * 180.02562 * 19 18 17 21 21 C 1.38442 * 119.95179 * 359.97438 * 19 18 17 22 22 C 1.38222 * 119.97275 * 64.60486 * 16 13 12 23 23 C 1.50703 * 119.99055 * 359.75447 * 22 16 13 24 24 F 1.39899 * 109.47287 * 185.13030 * 23 22 16 25 25 F 1.39905 * 109.46599 * 305.13032 * 23 22 16 26 26 F 1.39901 * 109.47383 * 65.12603 * 23 22 16 27 27 H 1.09000 * 109.47153 * 303.32310 * 1 2 3 28 28 H 1.08996 * 109.47277 * 63.32435 * 1 2 3 29 29 H 1.09007 * 109.47097 * 183.32865 * 1 2 3 30 30 H 0.96997 * 120.00088 * 180.02562 * 7 6 4 31 31 H 0.97002 * 119.99836 * 84.83080 * 12 2 1 32 32 H 1.08001 * 119.98853 * 0.27717 * 17 16 13 33 33 H 1.07998 * 120.01110 * 179.97438 * 18 17 16 34 34 H 1.07992 * 120.01548 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5827 -1.6347 -1.1333 6 6 1.7893 -0.1808 -2.4798 7 7 1.9391 -0.9282 -3.5515 8 14 1.2474 1.5987 -2.6505 9 1 2.4323 2.4536 -2.9162 10 1 0.2882 1.7181 -3.7779 11 1 0.5911 2.0392 -1.3934 12 7 2.0183 -0.6906 1.1963 13 16 2.4162 0.1778 2.5491 14 8 3.2825 1.2182 2.1176 15 8 2.7764 -0.7713 3.5435 16 6 0.9437 0.9603 3.1184 17 6 0.8499 2.3397 3.1175 18 6 -0.3022 2.9547 3.5690 19 6 -1.3628 2.1889 4.0230 20 9 -2.4899 2.7890 4.4643 21 6 -1.2678 0.8077 4.0235 22 6 -0.1145 0.1948 3.5709 23 6 -0.0105 -1.3086 3.5718 24 9 -1.2363 -1.8607 3.9589 25 9 0.3166 -1.7541 2.2866 26 9 0.9849 -1.7067 4.4707 27 1 -0.3633 0.5646 0.8587 28 1 -0.3633 0.4613 -0.9182 29 1 -0.3634 -1.0260 0.0597 30 1 1.7685 -0.5554 -4.4306 31 1 2.1086 -1.6564 1.1959 32 1 1.6773 2.9369 2.7637 33 1 -0.3751 4.0322 3.5686 34 1 -2.0944 0.2094 4.3770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171424265.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:39 Heat of formation + Delta-G solvation = -231.665102 kcal Electronic energy + Delta-G solvation = -29780.291593 eV Core-core repulsion = 24919.501462 eV Total energy + Delta-G solvation = -4860.790131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.34911 -50.29244 -48.89664 -48.70044 -40.48841 -38.43303 -37.40750 -37.03696 -34.25312 -33.47524 -32.32642 -30.85465 -27.53829 -27.12051 -24.70346 -23.69887 -22.74053 -20.83666 -20.28127 -19.82337 -19.62733 -19.25845 -18.66375 -17.86706 -17.74154 -17.51115 -17.23657 -16.94014 -16.34892 -15.95464 -15.71257 -15.54090 -15.39009 -15.12749 -14.97068 -14.85229 -14.68019 -14.66576 -14.58321 -14.29785 -14.16275 -13.79720 -13.64571 -13.56346 -13.26377 -13.09781 -12.86119 -12.57230 -12.49889 -12.27927 -12.14210 -11.48238 -11.38819 -10.70021 -10.61053 -10.50789 -10.24126 -8.29884 -6.30494 -0.96601 -0.69746 -0.38130 1.31595 1.36816 1.44135 1.49722 1.73896 1.98212 2.36143 2.36673 2.53431 2.65717 2.90356 3.05111 3.10692 3.23619 3.52961 3.65011 3.84584 4.04998 4.27667 4.29531 4.48981 4.59912 4.65565 4.70036 4.76771 4.86405 5.33211 5.35164 5.52460 5.57721 6.22137 6.33804 6.73292 7.31799 8.86281 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.005817 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.954714 B = 4812.583129 C = 5429.600403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.249 3.751 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.045 0.955 6 C 0.025 3.975 7 N -0.934 5.934 8 Si 0.913 3.087 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.218 1.218 12 N -1.089 6.089 13 S 2.680 3.320 14 O -0.974 6.974 15 O -0.967 6.967 16 C -0.654 4.654 17 C 0.004 3.996 18 C -0.126 4.126 19 C 0.157 3.843 20 F -0.117 7.117 21 C -0.124 4.124 22 C -0.066 4.066 23 C 0.475 3.525 24 F -0.164 7.164 25 F -0.162 7.162 26 F -0.152 7.152 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.420 0.580 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 8.312 17.333 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.064 0.936 6 C -0.174 4.174 7 N -0.573 5.573 8 Si 0.735 3.265 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.140 1.140 12 N -0.852 5.852 13 S 2.770 3.230 14 O -0.964 6.964 15 O -0.957 6.957 16 C -0.741 4.741 17 C -0.015 4.015 18 C -0.146 4.146 19 C 0.137 3.863 20 F -0.095 7.095 21 C -0.143 4.143 22 C -0.068 4.068 23 C 0.420 3.580 24 F -0.145 7.145 25 F -0.143 7.143 26 F -0.133 7.133 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.196 0.804 33 H 0.210 0.790 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.758 8.530 17.555 21.393 hybrid contribution -0.783 -0.260 -0.654 1.052 sum -9.541 8.270 16.901 21.097 Atomic orbital electron populations 1.22543 0.96985 1.01920 1.00432 1.18727 0.91700 0.92604 0.82752 0.93555 1.21209 1.36306 1.09371 0.90163 0.93638 1.25674 0.94885 1.01712 0.95173 1.70086 1.50452 1.37592 0.99146 0.86359 0.78993 0.80883 0.80226 1.20316 1.20667 1.13971 1.55363 1.83529 1.19791 1.26486 1.02077 0.74440 0.73611 0.72913 1.93551 1.62148 1.58762 1.81932 1.93660 1.82453 1.61168 1.58444 1.30772 1.20483 1.06520 1.16364 1.21202 0.98907 0.90729 0.90617 1.21860 0.91109 1.03564 0.98019 1.17714 0.83348 0.90243 0.94960 1.91604 1.48464 1.83342 1.86132 1.21198 0.98169 0.94473 1.00450 1.19281 0.95849 0.90541 1.01161 1.18753 0.75142 0.88728 0.75339 1.93190 1.43241 1.87158 1.90953 1.93354 1.91936 1.91021 1.37987 1.93405 1.60528 1.91921 1.67437 0.92836 0.92921 0.92267 0.92343 0.74225 0.80446 0.78958 0.80466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.93 8.00 71.98 0.58 -5.35 16 2 C 0.25 10.58 2.41 44.24 0.11 10.68 16 3 H 0.05 1.96 6.09 -2.39 -0.01 1.94 16 4 C -0.53 -28.29 9.18 25.60 0.24 -28.05 16 5 H 0.05 2.69 8.05 -2.91 -0.02 2.66 16 6 C 0.03 1.38 5.34 84.65 0.45 1.83 16 7 N -0.93 -55.44 13.96 21.45 0.30 -55.14 16 8 Si 0.91 39.96 25.80 68.60 1.77 41.73 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.22 -8.14 5.54 99.48 0.55 -7.59 16 12 N -1.09 -41.17 3.36 -172.52 -0.58 -41.75 16 13 S 2.68 91.27 4.90 -56.49 -0.28 91.00 16 14 O -0.97 -36.97 16.38 -128.00 -2.10 -39.07 16 15 O -0.97 -35.24 14.45 -128.00 -1.85 -37.09 16 16 C -0.65 -17.34 4.80 22.27 0.11 -17.23 16 17 C 0.00 0.09 9.55 22.26 0.21 0.30 16 18 C -0.13 -1.86 10.03 22.31 0.22 -1.64 16 19 C 0.16 2.57 7.30 22.37 0.16 2.73 16 20 F -0.12 -1.81 17.27 44.97 0.78 -1.03 16 21 C -0.12 -2.32 9.41 22.31 0.21 -2.11 16 22 C -0.07 -1.61 4.91 -19.87 -0.10 -1.71 16 23 C 0.48 13.05 2.79 71.24 0.20 13.25 16 24 F -0.16 -3.91 15.99 44.97 0.72 -3.20 16 25 F -0.16 -4.98 11.31 44.97 0.51 -4.47 16 26 F -0.15 -4.68 14.10 44.97 0.63 -4.04 16 27 H 0.05 1.62 6.59 -2.39 -0.02 1.60 16 28 H 0.05 2.00 5.11 -2.39 -0.01 1.99 16 29 H 0.06 2.20 7.49 -2.38 -0.02 2.19 16 30 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.42 15.52 7.70 -96.74 -0.74 14.77 16 32 H 0.18 3.16 7.33 -2.91 -0.02 3.14 16 33 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.18 2.56 7.17 -2.91 -0.02 2.54 16 Total: -1.00 -67.16 302.88 2.59 -64.56 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.30 Total: 15.79 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 2.39 Total: -27.29 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -0.28 Total: -96.89 kcal Atomic # 8 Polarization: -72.21 SS G_CDS: -3.95 Total: -76.16 kcal Atomic # 9 Polarization: -15.38 SS G_CDS: 2.64 Total: -12.74 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.77 Total: 41.73 kcal Atomic # 16 Polarization: 91.27 SS G_CDS: -0.28 Total: 91.00 kcal Total: -67.16 2.59 -64.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171424265.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.101 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds