Wall clock time and date at job start Tue Mar 31 2020 23:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47207 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46829 * 120.00678 * 3 2 1 7 7 C 1.37871 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00254 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00052 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99936 * 85.00357 * 10 9 7 12 12 C 1.53001 * 109.47277 * 84.99719 * 11 10 9 13 13 F 1.39897 * 109.47087 * 59.99788 * 12 11 10 14 14 F 1.39898 * 109.47123 * 180.02562 * 12 11 10 15 15 F 1.39904 * 109.46986 * 300.00127 * 12 11 10 16 16 S 1.65597 * 120.00079 * 264.72396 * 10 9 7 17 17 O 1.42095 * 106.40469 * 203.54076 * 16 10 9 18 18 O 1.42098 * 106.40441 * 336.46418 * 16 10 9 19 19 C 1.76207 * 107.21624 * 90.00391 * 16 10 9 20 20 C 1.38248 * 119.97019 * 269.72732 * 19 16 10 21 21 C 1.38196 * 120.02039 * 179.72813 * 20 19 16 22 22 C 1.38458 * 119.97769 * 0.56474 * 21 20 19 23 23 F 1.35102 * 120.03207 * 179.68466 * 22 21 20 24 24 C 1.38463 * 119.94404 * 359.70804 * 22 21 20 25 25 C 1.38191 * 119.97610 * 359.97438 * 24 22 21 26 26 H 0.97000 * 119.99969 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46795 * 60.00814 * 9 7 2 28 28 H 1.08999 * 109.47503 * 300.00135 * 9 7 2 29 29 H 1.08991 * 109.47463 * 204.99792 * 11 10 9 30 30 H 1.09000 * 109.46878 * 325.00020 * 11 10 9 31 31 H 1.08000 * 119.99345 * 359.97438 * 20 19 16 32 32 H 1.08003 * 120.01136 * 180.25045 * 21 20 19 33 33 H 1.08006 * 120.00904 * 179.97438 * 24 22 21 34 34 H 1.08007 * 119.98530 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7632 -4.0975 1.2634 12 6 1.8035 -5.1103 1.8912 13 9 1.6246 -6.1875 1.0166 14 9 2.3380 -5.5729 3.0985 15 9 0.5699 -4.4961 2.1329 16 16 2.6410 -4.3276 -1.4286 17 8 3.0821 -5.6384 -1.1024 18 8 1.5882 -4.0679 -2.3468 19 6 4.0528 -3.4637 -2.0330 20 6 3.8905 -2.3760 -2.8708 21 6 4.9968 -1.6943 -3.3409 22 6 6.2685 -2.1081 -2.9821 23 9 7.3510 -1.4463 -3.4462 24 6 6.4299 -3.2011 -2.1475 25 6 5.3219 -3.8772 -1.6733 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 3.7242 -4.5760 1.0752 30 1 2.9024 -3.2582 1.9448 31 1 2.8987 -2.0565 -3.1547 32 1 4.8697 -0.8421 -3.9921 33 1 7.4214 -3.5250 -1.8673 34 1 5.4476 -4.7296 -1.0220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173978969.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:25 Heat of formation + Delta-G solvation = -243.253475 kcal Electronic energy + Delta-G solvation = -28850.925439 eV Core-core repulsion = 23989.632798 eV Total energy + Delta-G solvation = -4861.292641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.66956 -49.10939 -47.22958 -47.10035 -38.87446 -36.93005 -36.16669 -35.47195 -32.78915 -31.23027 -30.73223 -29.33873 -26.53742 -23.35476 -23.16020 -23.09000 -22.27903 -18.99965 -18.32404 -18.11131 -18.06371 -17.63175 -16.88536 -16.76837 -16.52601 -16.14215 -15.75441 -15.43079 -14.66668 -14.62269 -14.16764 -14.06750 -13.72886 -13.65287 -13.60566 -13.37315 -13.31666 -13.30520 -13.23929 -12.86166 -12.68661 -12.49008 -12.09195 -11.87115 -11.71510 -11.42427 -11.29157 -11.17461 -11.03509 -10.76156 -10.65634 -10.24893 -10.05515 -9.18587 -9.14218 -8.62656 -8.49020 -6.24113 -4.32580 0.54876 0.86396 1.17946 3.04809 3.17105 3.17575 3.24729 3.25666 3.45687 4.03377 4.07851 4.21038 4.26099 4.36610 4.44369 4.57296 4.76067 4.78489 5.08825 5.13401 5.17675 5.33804 5.55108 5.61203 5.80654 5.90872 5.94013 6.09856 6.10539 6.74252 6.95826 7.21588 7.31518 7.70079 7.95484 8.71532 9.34722 10.83830 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.006563 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.589528 B = 4265.375807 C = 6259.408969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.977 5.977 11 C 0.093 3.907 12 C 0.428 3.572 13 F -0.177 7.177 14 F -0.189 7.189 15 F -0.175 7.175 16 S 2.689 3.311 17 O -0.961 6.961 18 O -0.944 6.944 19 C -0.679 4.679 20 C 0.033 3.967 21 C -0.176 4.176 22 C 0.146 3.854 23 F -0.136 7.136 24 C -0.181 4.181 25 C 0.003 3.997 26 H 0.267 0.733 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 -6.392 -0.842 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.589 4.589 8 H 0.082 0.918 9 C 0.114 3.886 10 N -0.814 5.814 11 C -0.038 4.038 12 C 0.372 3.628 13 F -0.159 7.159 14 F -0.171 7.171 15 F -0.156 7.156 16 S 2.779 3.221 17 O -0.952 6.952 18 O -0.934 6.934 19 C -0.765 4.765 20 C 0.014 3.986 21 C -0.195 4.195 22 C 0.127 3.873 23 F -0.115 7.115 24 C -0.201 4.201 25 C -0.016 4.016 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.148 -6.927 -1.267 11.545 hybrid contribution 1.123 1.677 0.132 2.023 sum 10.271 -5.250 -1.136 11.591 Atomic orbital electron populations 1.69915 1.05989 1.27547 1.48589 1.24908 0.94781 0.99135 0.94626 0.86656 0.79648 0.82940 0.78816 1.20049 1.21054 1.20112 1.21428 0.93531 0.90497 1.53458 0.91820 1.19575 0.87007 0.81102 1.00952 1.57562 1.57258 1.49454 1.17094 1.22220 0.94390 0.97251 0.89894 1.21514 0.82361 0.82436 0.76526 1.93231 1.95766 1.58060 1.68813 1.93143 1.86146 1.90073 1.47708 1.93210 1.45555 1.82461 1.94374 1.02140 0.73694 0.73115 0.73192 1.93572 1.83089 1.34586 1.83904 1.93582 1.52695 1.85414 1.61750 1.31214 1.17548 1.13790 1.13942 1.20901 0.99964 0.89009 0.88719 1.21288 0.90912 1.02856 1.04475 1.17979 0.83221 0.91542 0.94567 1.91516 1.53586 1.79621 1.86740 1.21155 1.00599 0.97049 1.01294 1.20744 0.90143 0.96434 0.94260 0.92276 0.92130 0.92788 0.87009 0.85124 0.82656 0.83901 0.84114 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.79 13.29 55.43 0.74 -23.05 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.55 -13.11 9.38 -34.44 -0.32 -13.44 16 8 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 9 C 0.23 5.27 5.25 -5.19 -0.03 5.24 16 10 N -0.98 -17.98 2.67 -115.66 -0.31 -18.29 16 11 C 0.09 1.39 5.42 -4.04 -0.02 1.37 16 12 C 0.43 6.89 3.29 37.16 0.12 7.01 16 13 F -0.18 -3.10 15.55 2.25 0.04 -3.07 16 14 F -0.19 -2.75 17.32 2.25 0.04 -2.71 16 15 F -0.17 -3.14 15.70 2.25 0.04 -3.11 16 16 S 2.69 48.23 5.59 -107.50 -0.60 47.63 16 17 O -0.96 -17.14 14.65 -57.17 -0.84 -17.98 16 18 O -0.94 -19.76 15.82 -57.17 -0.90 -20.66 16 19 C -0.68 -10.73 5.97 -39.58 -0.24 -10.96 16 20 C 0.03 0.53 9.52 -39.59 -0.38 0.15 16 21 C -0.18 -2.49 10.03 -39.52 -0.40 -2.89 16 22 C 0.15 1.98 7.30 -39.42 -0.29 1.69 16 23 F -0.14 -1.79 17.27 2.25 0.04 -1.76 16 24 C -0.18 -2.22 10.03 -39.52 -0.40 -2.62 16 25 C 0.00 0.05 9.52 -39.60 -0.38 -0.33 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.06 1.50 6.91 -51.93 -0.36 1.14 16 28 H 0.05 1.28 6.72 -51.93 -0.35 0.93 16 29 H 0.11 1.30 7.61 -51.93 -0.40 0.91 16 30 H 0.13 1.81 8.11 -51.93 -0.42 1.39 16 31 H 0.16 2.52 7.61 -52.49 -0.40 2.13 16 32 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.15 1.57 7.62 -52.48 -0.40 1.17 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -29.21 326.70 -7.00 -36.20 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -2.71 Total: 0.38 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.42 Total: -13.10 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.43 Total: -41.34 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.74 Total: -38.64 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 0.15 Total: -10.64 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 48.23 SS G_CDS: -0.60 Total: 47.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.21 -7.00 -36.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173978969.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.050 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds