Wall clock time and date at job start Tue Mar 31 2020 23:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47207 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46829 * 120.00678 * 3 2 1 7 7 C 1.37871 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00254 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00052 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99936 * 85.00357 * 10 9 7 12 12 C 1.53001 * 109.47277 * 84.99719 * 11 10 9 13 13 F 1.39897 * 109.47087 * 59.99788 * 12 11 10 14 14 F 1.39898 * 109.47123 * 180.02562 * 12 11 10 15 15 F 1.39904 * 109.46986 * 300.00127 * 12 11 10 16 16 S 1.65597 * 120.00079 * 264.72396 * 10 9 7 17 17 O 1.42095 * 106.40469 * 203.54076 * 16 10 9 18 18 O 1.42098 * 106.40441 * 336.46418 * 16 10 9 19 19 C 1.76207 * 107.21624 * 90.00391 * 16 10 9 20 20 C 1.38248 * 119.97019 * 269.72732 * 19 16 10 21 21 C 1.38196 * 120.02039 * 179.72813 * 20 19 16 22 22 C 1.38458 * 119.97769 * 0.56474 * 21 20 19 23 23 F 1.35102 * 120.03207 * 179.68466 * 22 21 20 24 24 C 1.38463 * 119.94404 * 359.70804 * 22 21 20 25 25 C 1.38191 * 119.97610 * 359.97438 * 24 22 21 26 26 H 0.97000 * 119.99969 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46795 * 60.00814 * 9 7 2 28 28 H 1.08999 * 109.47503 * 300.00135 * 9 7 2 29 29 H 1.08991 * 109.47463 * 204.99792 * 11 10 9 30 30 H 1.09000 * 109.46878 * 325.00020 * 11 10 9 31 31 H 1.08000 * 119.99345 * 359.97438 * 20 19 16 32 32 H 1.08003 * 120.01136 * 180.25045 * 21 20 19 33 33 H 1.08006 * 120.00904 * 179.97438 * 24 22 21 34 34 H 1.08007 * 119.98530 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7632 -4.0975 1.2634 12 6 1.8035 -5.1103 1.8912 13 9 1.6246 -6.1875 1.0166 14 9 2.3380 -5.5729 3.0985 15 9 0.5699 -4.4961 2.1329 16 16 2.6410 -4.3276 -1.4286 17 8 3.0821 -5.6384 -1.1024 18 8 1.5882 -4.0679 -2.3468 19 6 4.0528 -3.4637 -2.0330 20 6 3.8905 -2.3760 -2.8708 21 6 4.9968 -1.6943 -3.3409 22 6 6.2685 -2.1081 -2.9821 23 9 7.3510 -1.4463 -3.4462 24 6 6.4299 -3.2011 -2.1475 25 6 5.3219 -3.8772 -1.6733 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 3.7242 -4.5760 1.0752 30 1 2.9024 -3.2582 1.9448 31 1 2.8987 -2.0565 -3.1547 32 1 4.8697 -0.8421 -3.9921 33 1 7.4214 -3.5250 -1.8673 34 1 5.4476 -4.7296 -1.0220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173978969.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:24 Heat of formation + Delta-G solvation = -260.769631 kcal Electronic energy + Delta-G solvation = -28851.684996 eV Core-core repulsion = 23989.632798 eV Total energy + Delta-G solvation = -4862.052198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.97855 -50.13830 -48.49928 -48.47213 -39.95809 -38.40272 -37.67227 -36.95713 -34.63468 -32.29116 -31.84280 -30.85111 -28.21973 -24.91239 -24.27549 -24.22318 -23.76286 -20.35344 -19.61455 -19.42905 -19.37082 -18.83993 -18.51923 -18.07484 -17.83077 -17.59559 -16.87823 -16.77916 -16.28957 -15.73044 -15.53149 -15.41139 -15.15044 -14.91528 -14.70074 -14.67998 -14.63960 -14.59623 -14.42214 -14.35673 -14.10902 -13.67096 -13.59122 -13.35947 -13.20209 -13.06374 -12.94227 -12.62630 -12.38128 -12.22418 -12.12651 -11.93007 -11.78154 -10.55964 -10.28517 -10.24192 -10.05093 -8.16130 -6.29235 -0.74401 -0.36988 0.12420 1.45281 1.46154 1.53115 1.74144 1.88605 2.29288 2.43499 2.70589 2.94058 3.01691 3.12150 3.12736 3.18794 3.33704 3.63098 3.80772 3.84828 4.13309 4.21641 4.34949 4.57449 4.62433 4.79489 4.89189 4.98205 5.00454 5.28854 5.34883 5.56106 5.69139 5.79905 6.06958 6.82638 7.41260 8.92279 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.008968 B = 0.006563 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.589528 B = 4265.375807 C = 6259.408969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.250 3.750 10 N -0.982 5.982 11 C 0.085 3.915 12 C 0.426 3.574 13 F -0.187 7.187 14 F -0.177 7.177 15 F -0.191 7.191 16 S 2.695 3.305 17 O -0.961 6.961 18 O -0.985 6.985 19 C -0.686 4.686 20 C 0.010 3.990 21 C -0.181 4.181 22 C 0.146 3.854 23 F -0.132 7.132 24 C -0.168 4.168 25 C 0.006 3.994 26 H 0.265 0.735 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.179 0.821 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.089 -6.458 -0.319 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.127 3.873 10 N -0.818 5.818 11 C -0.044 4.044 12 C 0.370 3.630 13 F -0.169 7.169 14 F -0.159 7.159 15 F -0.172 7.172 16 S 2.789 3.211 17 O -0.951 6.951 18 O -0.976 6.976 19 C -0.776 4.776 20 C -0.010 4.010 21 C -0.201 4.201 22 C 0.126 3.874 23 F -0.111 7.111 24 C -0.187 4.187 25 C -0.013 4.013 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.175 0.825 33 H 0.196 0.804 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 12.507 -7.032 -0.720 14.366 hybrid contribution 0.170 1.619 -0.053 1.629 sum 12.677 -5.413 -0.773 13.806 Atomic orbital electron populations 1.70049 1.07606 1.28073 1.50634 1.25688 0.95366 1.02439 0.94719 0.85734 0.78436 0.79057 0.79284 1.19189 1.21689 1.19093 1.21741 0.94148 0.90733 1.51467 0.90485 1.19076 0.87294 0.82248 0.98649 1.57380 1.57231 1.48357 1.18813 1.22620 0.95336 0.97753 0.88686 1.21713 0.82027 0.82404 0.76858 1.93211 1.95825 1.58592 1.69237 1.93163 1.85809 1.89948 1.46967 1.93183 1.46810 1.82744 1.94492 1.01643 0.73816 0.73135 0.72550 1.93561 1.83078 1.34660 1.83835 1.93531 1.55146 1.85995 1.62935 1.30788 1.17472 1.14200 1.15094 1.20851 0.99982 0.90057 0.90076 1.21425 0.90891 1.03159 1.04589 1.18110 0.82911 0.91842 0.94516 1.91532 1.53230 1.79618 1.86687 1.21544 1.01973 0.95656 0.99561 1.21119 0.89040 0.97031 0.94142 0.92565 0.95325 0.94455 0.82962 0.83681 0.84391 0.82528 0.80365 0.80691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.08 13.29 21.45 0.28 -50.80 16 2 C 0.02 0.92 5.46 84.65 0.46 1.38 16 3 Si 0.95 39.81 29.54 68.60 2.03 41.84 16 4 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.54 -25.76 9.38 25.60 0.24 -25.52 16 8 H 0.08 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.25 11.50 5.25 85.63 0.45 11.95 16 10 N -0.98 -35.74 2.67 -519.85 -1.39 -37.12 16 11 C 0.08 2.38 5.42 86.38 0.47 2.85 16 12 C 0.43 13.27 3.29 71.98 0.24 13.51 16 13 F -0.19 -6.40 15.55 44.97 0.70 -5.71 16 14 F -0.18 -4.84 17.32 44.97 0.78 -4.06 16 15 F -0.19 -6.93 15.70 44.97 0.71 -6.22 16 16 S 2.70 95.75 5.59 -56.49 -0.32 95.43 16 17 O -0.96 -32.82 14.65 -128.00 -1.87 -34.70 16 18 O -0.99 -42.89 15.82 -128.00 -2.03 -44.92 16 19 C -0.69 -20.59 5.97 22.27 0.13 -20.46 16 20 C 0.01 0.31 9.52 22.26 0.21 0.52 16 21 C -0.18 -4.81 10.03 22.31 0.22 -4.59 16 22 C 0.15 3.45 7.30 22.38 0.16 3.62 16 23 F -0.13 -3.03 17.27 44.97 0.78 -2.25 16 24 C -0.17 -3.36 10.03 22.31 0.22 -3.14 16 25 C 0.01 0.13 9.52 22.26 0.21 0.34 16 26 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.03 1.50 6.91 -2.39 -0.02 1.48 16 28 H 0.04 1.83 6.72 -2.39 -0.02 1.81 16 29 H 0.15 3.00 7.61 -2.39 -0.02 2.98 16 30 H 0.15 3.68 8.11 -2.39 -0.02 3.66 16 31 H 0.14 4.70 7.61 -2.91 -0.02 4.67 16 32 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.18 2.90 7.62 -2.91 -0.02 2.88 16 Total: -1.00 -63.70 326.70 3.86 -59.84 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.17 Total: 8.19 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.02 Total: -19.53 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -1.10 Total: -87.92 kcal Atomic # 8 Polarization: -75.71 SS G_CDS: -3.90 Total: -79.61 kcal Atomic # 9 Polarization: -21.19 SS G_CDS: 2.96 Total: -18.23 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 16 Polarization: 95.75 SS G_CDS: -0.32 Total: 95.43 kcal Total: -63.70 3.86 -59.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173978969.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.929 kcal (2) G-P(sol) polarization free energy of solvation -63.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds