Wall clock time and date at job start Tue Mar 31 2020 23:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99648 * 2 1 4 4 H 1.48499 * 109.46676 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46947 * 299.99677 * 3 2 1 6 6 H 1.48493 * 109.47140 * 60.00093 * 3 2 1 7 7 C 1.37871 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00342 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00144 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47602 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54120 * 68.37781 * 11 10 9 13 13 O 1.42099 * 110.54218 * 291.62245 * 11 10 9 14 14 N 1.65602 * 104.44841 * 180.02562 * 11 10 9 15 15 C 1.34782 * 120.00203 * 65.00060 * 14 11 10 16 16 O 1.21284 * 119.99458 * 0.02562 * 15 14 11 17 17 C 1.50699 * 120.00252 * 179.97438 * 15 14 11 18 18 H 1.09002 * 109.19318 * 60.51891 * 17 15 14 19 19 C 1.54142 * 109.27475 * 301.04462 * 17 15 14 20 20 S 1.83295 * 101.07923 * 211.45899 * 19 17 15 21 21 C 1.77434 * 96.61074 * 24.85018 * 20 19 17 22 22 C 1.38814 * 130.57320 * 164.89418 * 21 20 19 23 23 C 1.38030 * 120.16159 * 180.57979 * 22 21 20 24 24 C 1.38326 * 119.28941 * 359.43065 * 23 22 21 25 25 C 1.37698 * 120.54148 * 0.13716 * 24 23 22 26 26 C 1.38893 * 108.27900 * 344.72834 * 21 20 19 27 27 H 0.97001 * 120.00252 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47003 * 59.99507 * 9 7 2 29 29 H 1.08998 * 109.46960 * 300.00250 * 9 7 2 30 30 H 1.09004 * 109.46683 * 59.99554 * 10 9 7 31 31 H 1.08998 * 109.46965 * 300.00591 * 10 9 7 32 32 H 0.96997 * 119.99788 * 244.99934 * 14 11 10 33 33 H 1.09004 * 111.09475 * 329.41176 * 19 17 15 34 34 H 1.08996 * 111.09930 * 93.46134 * 19 17 15 35 35 H 1.08003 * 119.92454 * 0.30485 * 22 21 20 36 36 H 1.08002 * 120.35863 * 179.71308 * 23 22 21 37 37 H 1.08004 * 119.72704 * 180.15903 * 24 23 22 38 38 H 1.08000 * 119.46870 * 180.09154 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2354 13 8 0.6648 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0020 15 6 3.3470 -6.5119 1.0599 16 8 3.2245 -5.7701 2.0116 17 6 4.4225 -7.5676 1.0608 18 1 5.0972 -7.3924 0.2228 19 6 3.7720 -8.9567 0.9086 20 16 4.9406 -9.9991 1.8613 21 6 5.5623 -8.7065 2.9059 22 6 6.2933 -8.7710 4.0843 23 6 6.6606 -7.6115 4.7368 24 6 6.3027 -6.3890 4.1975 25 6 5.5852 -6.3250 3.0240 26 6 5.1995 -7.4859 2.3514 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6042 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 2.6182 -6.9861 -0.7591 33 1 2.7772 -8.9750 1.3538 34 1 3.7368 -9.2610 -0.1374 35 1 6.5715 -9.7308 4.4939 36 1 7.2254 -7.6580 5.6562 37 1 6.5886 -5.4772 4.7009 38 1 5.3162 -5.3612 2.6175 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181269217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:20 Heat of formation + Delta-G solvation = -83.100702 kcal Electronic energy + Delta-G solvation = -24839.292118 eV Core-core repulsion = 21093.014139 eV Total energy + Delta-G solvation = -3746.277979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91133 -39.04482 -36.81643 -35.71936 -35.17377 -34.39735 -33.95660 -31.24378 -31.09220 -29.85406 -25.89570 -25.64662 -23.21514 -22.79481 -21.73907 -20.94114 -19.51321 -18.23299 -17.89408 -17.66378 -16.61152 -16.37772 -15.77058 -15.73064 -15.46974 -15.22971 -14.89119 -14.67649 -14.57918 -13.88873 -13.71780 -13.49626 -13.33551 -12.78365 -12.74845 -12.58631 -12.40045 -11.89865 -11.86072 -11.81021 -11.70845 -11.58859 -11.14461 -11.07479 -10.97176 -10.67644 -10.46748 -10.41267 -10.32195 -9.89524 -9.76189 -9.23192 -9.07565 -8.54288 -7.77838 -6.16278 -4.22075 0.37278 0.82656 1.06649 1.18376 1.69556 1.93204 2.57136 3.23504 3.30777 3.34105 3.38110 3.75602 3.93210 3.98189 4.03501 4.33769 4.42355 4.52590 4.66676 4.76811 4.81912 4.90435 5.06659 5.10132 5.19191 5.26671 5.45430 5.50824 5.62999 5.72319 5.96372 6.10888 6.27738 6.36626 6.45210 6.62950 7.21720 7.24271 7.29097 7.76616 8.11607 8.81065 9.42896 10.94816 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.003180 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.708511 B = 8804.197030 C =10245.422332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.574 4.574 11 S 2.562 3.438 12 O -0.952 6.952 13 O -0.936 6.936 14 N -1.057 6.057 15 C 0.542 3.458 16 O -0.471 6.471 17 C -0.072 4.072 18 H 0.135 0.865 19 C -0.087 4.087 20 S -0.131 6.131 21 C -0.074 4.074 22 C -0.094 4.094 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.059 4.059 26 C -0.101 4.101 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.429 0.571 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.086 -19.601 2.739 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.663 3.337 12 O -0.942 6.942 13 O -0.926 6.926 14 N -0.818 5.818 15 C 0.325 3.675 16 O -0.341 6.341 17 C -0.095 4.095 18 H 0.152 0.848 19 C -0.236 4.236 20 S 0.111 5.889 21 C -0.187 4.187 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.141 4.141 25 C -0.078 4.078 26 C -0.107 4.107 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.264 0.736 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.096 -20.520 3.298 24.565 hybrid contribution 0.722 2.154 -0.376 2.303 sum 13.818 -18.365 2.922 23.168 Atomic orbital electron populations 1.69961 1.06121 1.27184 1.49494 1.25067 0.94995 0.99584 0.94818 0.86390 0.79918 0.83047 0.77799 1.19613 1.20773 1.20728 1.20997 0.93117 0.89518 1.52262 0.91902 1.19002 0.92620 0.90316 0.99070 1.30337 1.13730 1.16061 1.10771 1.06850 0.75003 0.77301 0.74562 1.93598 1.70307 1.85254 1.45050 1.93608 1.70161 1.84315 1.44475 1.55483 1.49216 1.50494 1.26584 1.20145 0.81571 0.84518 0.81216 1.90933 1.68636 1.42483 1.32049 1.20830 0.95715 0.93765 0.99240 0.84762 1.24376 1.01478 0.92931 1.04783 1.86109 1.48064 1.14470 1.40300 1.21933 1.03316 0.94826 0.98597 1.20362 0.99178 0.99170 0.93069 1.21164 0.99016 0.91950 0.99448 1.21077 0.98680 0.98325 0.96041 1.21045 0.94548 0.97781 0.94437 1.20152 1.01277 0.93930 0.95382 0.92515 0.94733 0.94551 0.85093 0.85947 0.73629 0.87298 0.85299 0.85457 0.84999 0.85166 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.57 -10.89 5.82 37.15 0.22 -10.67 16 11 S 2.56 44.27 5.11 -107.50 -0.55 43.72 16 12 O -0.95 -18.03 18.08 -57.54 -1.04 -19.07 16 13 O -0.94 -19.82 17.03 -64.80 -1.10 -20.93 16 14 N -1.06 -12.08 5.50 31.22 0.17 -11.91 16 15 C 0.54 6.67 6.70 -10.98 -0.07 6.60 16 16 O -0.47 -7.66 12.03 -11.61 -0.14 -7.80 16 17 C -0.07 -0.66 2.95 -92.24 -0.27 -0.93 16 18 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.09 -0.66 6.80 37.75 0.26 -0.40 16 20 S -0.13 -1.22 23.08 -107.50 -2.48 -3.70 16 21 C -0.07 -0.80 6.48 -39.13 -0.25 -1.05 16 22 C -0.09 -0.90 10.05 -39.44 -0.40 -1.29 16 23 C -0.10 -0.84 10.08 -39.63 -0.40 -1.24 16 24 C -0.12 -1.21 10.00 -39.75 -0.40 -1.60 16 25 C -0.06 -0.68 8.62 -39.27 -0.34 -1.02 16 26 C -0.10 -1.14 5.38 -103.79 -0.56 -1.70 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.13 2.41 7.19 -51.92 -0.37 2.04 16 31 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 32 H 0.43 2.97 8.65 -34.47 -0.30 2.67 16 33 H 0.11 0.89 7.92 -51.93 -0.41 0.48 16 34 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.13 1.62 6.86 -52.49 -0.36 1.26 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -37.03 348.96 -11.30 -48.33 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -4.37 Total: 1.31 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -2.77 Total: -25.73 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.91 Total: -37.42 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -2.28 Total: -47.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 43.05 SS G_CDS: -3.03 Total: 40.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.03 -11.30 -48.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181269217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.768 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds