Wall clock time and date at job start Tue Mar 31 2020 23:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47680 * 2 1 4 4 C 1.46501 * 119.99606 * 274.81052 * 3 2 1 5 5 C 1.50696 * 109.47398 * 269.99179 * 4 3 2 6 6 H 1.08006 * 119.99679 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00408 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00055 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47148 * 119.99922 * 9 7 5 12 12 H 1.48499 * 109.47169 * 239.99716 * 9 7 5 13 13 C 1.34777 * 120.00333 * 94.80721 * 3 2 1 14 14 O 1.21636 * 120.00245 * 185.75055 * 13 3 2 15 15 C 1.47063 * 119.99520 * 5.74851 * 13 3 2 16 16 N 1.36712 * 126.89734 * 252.17512 * 15 13 3 17 17 H 0.96997 * 125.18997 * 0.02562 * 16 15 13 18 18 N 1.28440 * 109.62239 * 179.73957 * 16 15 13 19 19 C 1.30835 * 110.96961 * 0.23303 * 18 16 15 20 20 C 1.50700 * 126.06503 * 180.02562 * 19 18 16 21 21 C 1.53010 * 117.49588 * 8.60190 * 20 19 18 22 22 C 1.53000 * 117.50273 * 299.98167 * 20 19 18 23 23 C 1.38506 * 126.90286 * 72.30430 * 15 13 3 24 24 Br 1.89106 * 127.33370 * 0.03737 * 23 15 13 25 25 H 1.09003 * 109.47261 * 59.99808 * 1 2 3 26 26 H 1.08994 * 109.47524 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46849 * 300.00336 * 1 2 3 28 28 H 1.08999 * 109.47184 * 239.99738 * 2 1 3 29 29 H 1.09003 * 109.47261 * 120.00192 * 2 1 3 30 30 H 1.08993 * 109.47380 * 30.00037 * 4 3 2 31 31 H 1.09006 * 109.46680 * 150.00016 * 4 3 2 32 32 H 0.96993 * 119.99985 * 179.97438 * 8 7 5 33 33 H 1.08998 * 115.55185 * 154.29802 * 20 19 18 34 34 H 1.09001 * 117.49879 * 359.97438 * 21 20 19 35 35 H 1.08997 * 117.49644 * 145.01899 * 21 20 19 36 36 H 1.08996 * 117.49787 * 214.97893 * 22 20 19 37 37 H 1.09005 * 117.49005 * 359.97217 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1623 2.1071 -1.2643 5 6 3.5464 1.8842 -1.8169 6 1 4.2486 1.2634 -1.2802 7 6 3.9165 2.4727 -3.0076 8 7 3.0617 3.2290 -3.6609 9 14 5.6320 2.1957 -3.6929 10 1 6.3949 1.3119 -2.7752 11 1 5.5339 1.5547 -5.0288 12 1 6.3309 3.4998 -3.8198 13 6 2.3353 1.9839 1.1631 14 8 2.6404 3.1614 1.1745 15 6 2.3122 1.2180 2.4183 16 7 1.3943 1.3215 3.4262 17 1 0.6349 1.9248 3.4308 18 7 1.6877 0.4936 4.3633 19 6 2.7677 -0.1836 4.0688 20 6 3.4123 -1.2423 4.9259 21 6 2.6484 -1.7081 6.1671 22 6 3.8913 -0.8288 6.3189 23 6 3.2173 0.2488 2.8179 24 35 4.7347 -0.3639 1.8701 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.4231 1.7437 -1.9781 31 1 2.0074 3.1722 -1.0913 32 1 3.3221 3.6433 -4.4984 33 1 4.0035 -1.9851 4.3903 34 1 1.6799 -1.2484 6.3640 35 1 2.7370 -2.7574 6.4483 36 1 4.7975 -1.2996 6.6998 37 1 3.7405 0.2094 6.6151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264461787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:49 Heat of formation + Delta-G solvation = 64.712073 kcal Electronic energy + Delta-G solvation = -21887.105410 eV Core-core repulsion = 18520.305562 eV Total energy + Delta-G solvation = -3366.799848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.64804 -38.97091 -37.22782 -35.48575 -32.89544 -32.43341 -31.04770 -30.21578 -29.49375 -27.19325 -24.41299 -23.62603 -23.11150 -22.48443 -21.50586 -20.14546 -19.24906 -17.48534 -16.58537 -16.30540 -15.98754 -15.71083 -15.15793 -14.51942 -14.36968 -14.02291 -13.56286 -13.49878 -13.10537 -12.41459 -12.17327 -12.13320 -11.80351 -11.66666 -11.42944 -11.29459 -11.22485 -10.98702 -10.90349 -10.73202 -10.56541 -10.47280 -10.18496 -9.91961 -9.67843 -9.42715 -9.03654 -8.65041 -8.46290 -7.84782 -6.07952 -4.12056 1.51660 1.72619 2.23128 2.60500 3.19466 3.29068 3.37259 3.42209 3.72270 3.82699 4.32795 4.43788 4.55508 4.74587 4.83548 4.94253 5.24762 5.27813 5.31408 5.43519 5.52058 5.56582 5.66724 5.69553 5.97651 5.98866 6.03076 6.08813 6.17155 6.41222 6.83929 6.92308 7.29352 7.40046 7.85678 7.89182 8.14854 8.17239 8.65166 8.94582 9.53165 11.00567 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.004737 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.884717 B = 5909.477133 C = 6800.908426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 N -0.569 5.569 4 C 0.245 3.755 5 C -0.526 4.526 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.571 3.429 14 O -0.520 6.520 15 C 0.043 3.957 16 N -0.366 5.366 17 H 0.451 0.549 18 N -0.278 5.278 19 C 0.097 3.903 20 C -0.079 4.079 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.174 4.174 24 Br 0.009 6.991 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 -11.634 15.798 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.299 5.299 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.353 3.647 14 O -0.396 6.396 15 C -0.091 4.091 16 N -0.079 5.079 17 H 0.297 0.703 18 N -0.109 5.109 19 C -0.064 4.064 20 C -0.099 4.099 21 C -0.201 4.201 22 C -0.200 4.200 23 C -0.265 4.265 24 Br 0.093 6.907 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.549 -10.965 16.061 19.613 hybrid contribution 0.788 0.296 -0.953 1.271 sum -1.761 -10.669 15.108 18.579 Atomic orbital electron populations 1.22169 0.96460 1.01650 1.02060 1.21558 0.93651 0.83782 1.03438 1.48174 1.60780 1.13652 1.07295 1.19434 0.97451 0.93061 0.77379 1.21475 0.98270 1.30687 1.06031 0.91775 1.24903 0.97480 0.94848 0.96674 1.69934 1.34964 1.32115 1.16363 0.86472 0.84343 0.78141 0.78723 1.19632 1.20956 1.20858 1.16889 0.79811 0.86144 0.81856 1.90849 1.47922 1.14836 1.85982 1.21942 0.93451 0.99833 0.93915 1.43396 1.22877 1.30017 1.11617 0.70273 1.73036 1.17419 1.05618 1.14848 1.20810 0.93363 0.98899 0.93290 1.20230 1.03367 0.97823 0.88511 1.22970 0.97048 1.00069 0.99995 1.23001 0.98551 1.01039 0.97453 1.22139 1.00444 1.04756 0.99143 1.96715 1.33275 1.87340 1.73409 0.91686 0.91908 0.93678 0.89393 0.91258 0.94361 0.93508 0.92747 0.85573 0.87977 0.88346 0.88126 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.15 0.38 -1.88 16 2 C 0.10 1.64 6.09 -4.05 -0.02 1.62 16 3 N -0.57 -11.68 2.46 -176.47 -0.43 -12.12 16 4 C 0.25 6.14 5.23 -5.19 -0.03 6.11 16 5 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.57 11.87 7.46 -12.68 -0.09 11.78 16 14 O -0.52 -12.94 16.66 5.25 0.09 -12.86 16 15 C 0.04 0.74 5.56 -82.01 -0.46 0.28 16 16 N -0.37 -5.08 6.94 33.49 0.23 -4.85 16 17 H 0.45 4.97 8.96 -190.46 -1.71 3.26 16 18 N -0.28 -3.84 11.73 33.65 0.39 -3.44 16 19 C 0.10 1.35 6.75 -82.44 -0.56 0.80 16 20 C -0.08 -0.87 6.15 -91.77 -0.56 -1.44 16 21 C -0.16 -1.46 10.14 -26.73 -0.27 -1.73 16 22 C -0.16 -1.51 10.23 -26.73 -0.27 -1.79 16 23 C -0.17 -2.79 5.65 -38.91 -0.22 -3.01 16 24 Br 0.01 0.14 33.74 -68.01 -2.29 -2.15 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 29 H 0.07 1.08 5.68 -51.93 -0.29 0.78 16 30 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 31 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.10 0.99 7.90 -51.93 -0.41 0.58 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -31.83 343.18 -9.79 -41.62 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.14 Total: -0.42 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.53 Total: -2.33 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.93 Total: -45.62 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -2.29 Total: -2.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.83 -9.79 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264461787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.334 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds