Wall clock time and date at job start Tue Mar 31 2020 23:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47680 * 2 1 4 4 C 1.46501 * 119.99606 * 274.81052 * 3 2 1 5 5 C 1.50696 * 109.47398 * 269.99179 * 4 3 2 6 6 H 1.08006 * 119.99679 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00408 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00055 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47148 * 119.99922 * 9 7 5 12 12 H 1.48499 * 109.47169 * 239.99716 * 9 7 5 13 13 C 1.34777 * 120.00333 * 94.80721 * 3 2 1 14 14 O 1.21636 * 120.00245 * 185.75055 * 13 3 2 15 15 C 1.47063 * 119.99520 * 5.74851 * 13 3 2 16 16 N 1.36712 * 126.89734 * 252.17512 * 15 13 3 17 17 H 0.96997 * 125.18997 * 0.02562 * 16 15 13 18 18 N 1.28440 * 109.62239 * 179.73957 * 16 15 13 19 19 C 1.30835 * 110.96961 * 0.23303 * 18 16 15 20 20 C 1.50700 * 126.06503 * 180.02562 * 19 18 16 21 21 C 1.53010 * 117.49588 * 8.60190 * 20 19 18 22 22 C 1.53000 * 117.50273 * 299.98167 * 20 19 18 23 23 C 1.38506 * 126.90286 * 72.30430 * 15 13 3 24 24 Br 1.89106 * 127.33370 * 0.03737 * 23 15 13 25 25 H 1.09003 * 109.47261 * 59.99808 * 1 2 3 26 26 H 1.08994 * 109.47524 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46849 * 300.00336 * 1 2 3 28 28 H 1.08999 * 109.47184 * 239.99738 * 2 1 3 29 29 H 1.09003 * 109.47261 * 120.00192 * 2 1 3 30 30 H 1.08993 * 109.47380 * 30.00037 * 4 3 2 31 31 H 1.09006 * 109.46680 * 150.00016 * 4 3 2 32 32 H 0.96993 * 119.99985 * 179.97438 * 8 7 5 33 33 H 1.08998 * 115.55185 * 154.29802 * 20 19 18 34 34 H 1.09001 * 117.49879 * 359.97438 * 21 20 19 35 35 H 1.08997 * 117.49644 * 145.01899 * 21 20 19 36 36 H 1.08996 * 117.49787 * 214.97893 * 22 20 19 37 37 H 1.09005 * 117.49005 * 359.97217 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1623 2.1071 -1.2643 5 6 3.5464 1.8842 -1.8169 6 1 4.2486 1.2634 -1.2802 7 6 3.9165 2.4727 -3.0076 8 7 3.0617 3.2290 -3.6609 9 14 5.6320 2.1957 -3.6929 10 1 6.3949 1.3119 -2.7752 11 1 5.5339 1.5547 -5.0288 12 1 6.3309 3.4998 -3.8198 13 6 2.3353 1.9839 1.1631 14 8 2.6404 3.1614 1.1745 15 6 2.3122 1.2180 2.4183 16 7 1.3943 1.3215 3.4262 17 1 0.6349 1.9248 3.4308 18 7 1.6877 0.4936 4.3633 19 6 2.7677 -0.1836 4.0688 20 6 3.4123 -1.2423 4.9259 21 6 2.6484 -1.7081 6.1671 22 6 3.8913 -0.8288 6.3189 23 6 3.2173 0.2488 2.8179 24 35 4.7347 -0.3639 1.8701 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.4231 1.7437 -1.9781 31 1 2.0074 3.1722 -1.0913 32 1 3.3221 3.6433 -4.4984 33 1 4.0035 -1.9851 4.3903 34 1 1.6799 -1.2484 6.3640 35 1 2.7370 -2.7574 6.4483 36 1 4.7975 -1.2996 6.6998 37 1 3.7405 0.2094 6.6151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264461787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:48 Heat of formation + Delta-G solvation = 45.418864 kcal Electronic energy + Delta-G solvation = -21887.942026 eV Core-core repulsion = 18520.305562 eV Total energy + Delta-G solvation = -3367.636465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.84224 -40.63271 -38.03315 -37.17264 -34.92074 -33.68510 -32.29044 -31.71036 -30.80397 -29.04822 -25.81019 -25.02258 -24.57699 -23.24492 -22.86952 -21.41992 -20.37824 -18.97697 -18.58803 -17.91798 -17.36097 -16.76325 -16.48683 -16.18360 -15.84086 -15.26533 -14.86658 -14.80983 -14.63420 -14.23350 -13.72179 -13.32331 -13.15423 -13.06536 -12.74993 -12.61195 -12.57882 -12.44652 -12.29042 -12.19645 -12.01319 -11.79370 -11.69314 -11.27666 -11.21596 -11.06134 -10.62806 -10.15500 -9.86329 -9.61859 -8.21615 -6.33757 0.20241 0.48291 1.13527 1.20232 1.37721 1.40228 1.51295 1.72166 2.29677 2.41769 3.04154 3.09128 3.17846 3.42899 3.65303 3.97246 4.02665 4.07046 4.21031 4.29841 4.45543 4.51241 4.81567 4.86051 4.86686 4.87577 4.99489 5.12545 5.17258 5.20886 5.28623 5.35690 5.50937 5.76653 5.77788 6.05301 6.45474 6.71370 6.73693 7.02478 7.36522 8.86499 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.004737 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.884717 B = 5909.477133 C = 6800.908426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.568 5.568 4 C 0.261 3.739 5 C -0.537 4.537 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.926 5.926 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.574 3.426 14 O -0.572 6.572 15 C 0.025 3.975 16 N -0.351 5.351 17 H 0.462 0.538 18 N -0.268 5.268 19 C 0.101 3.899 20 C -0.101 4.101 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.178 4.178 24 Br 0.005 6.995 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.007 0.993 32 H 0.266 0.734 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 -13.856 17.277 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.298 5.298 4 C 0.141 3.859 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.185 4.185 8 N -0.566 5.566 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.358 3.642 14 O -0.451 6.451 15 C -0.110 4.110 16 N -0.066 5.066 17 H 0.311 0.689 18 N -0.099 5.099 19 C -0.059 4.059 20 C -0.121 4.121 21 C -0.185 4.185 22 C -0.195 4.195 23 C -0.269 4.269 24 Br 0.089 6.911 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.290 -13.229 17.557 22.102 hybrid contribution 0.659 0.968 -1.344 1.783 sum -1.631 -12.261 16.213 20.393 Atomic orbital electron populations 1.22111 0.93997 1.03646 1.01814 1.21789 0.95634 0.81330 1.03795 1.48101 1.60642 1.14977 1.06039 1.18919 0.96511 0.91341 0.79155 1.21711 0.99095 1.30562 1.06235 0.92236 1.25716 1.01218 0.94528 0.97045 1.70036 1.36829 1.32910 1.16845 0.85506 0.79701 0.78018 0.78515 1.19129 1.19536 1.20870 1.17233 0.78418 0.85642 0.82925 1.90812 1.50124 1.17240 1.86973 1.21280 0.95540 1.00844 0.93363 1.43435 1.22615 1.29949 1.10602 0.68904 1.73082 1.17341 1.05327 1.14159 1.21256 0.92902 0.99058 0.92718 1.20409 1.04830 0.97791 0.89079 1.23052 0.96436 1.01340 0.97652 1.23083 0.99835 1.00831 0.95743 1.22281 1.00069 1.04546 0.99973 1.96704 1.33506 1.87234 1.73665 0.92902 0.88732 0.92974 0.89890 0.89936 0.94794 0.97485 0.92455 0.84654 0.88679 0.85892 0.85993 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.24 71.98 0.74 -3.35 16 2 C 0.10 3.13 6.09 86.38 0.53 3.66 16 3 N -0.57 -23.83 2.46 -830.48 -2.04 -25.87 16 4 C 0.26 13.57 5.23 85.63 0.45 14.02 16 5 C -0.54 -30.04 9.39 25.60 0.24 -29.80 16 6 H 0.06 3.32 7.81 -2.91 -0.02 3.29 16 7 C 0.01 0.80 5.46 84.65 0.46 1.26 16 8 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 C 0.57 24.38 7.46 86.56 0.65 25.02 16 14 O -0.57 -29.67 16.66 -4.15 -0.07 -29.74 16 15 C 0.02 0.83 5.56 40.76 0.23 1.05 16 16 N -0.35 -9.35 6.94 -47.95 -0.33 -9.68 16 17 H 0.46 9.71 8.96 -220.01 -1.97 7.74 16 18 N -0.27 -6.87 11.73 -47.44 -0.56 -7.43 16 19 C 0.10 2.62 6.75 43.08 0.29 2.91 16 20 C -0.10 -1.95 6.15 -11.54 -0.07 -2.03 16 21 C -0.15 -2.16 10.14 30.60 0.31 -1.85 16 22 C -0.16 -2.48 10.23 30.59 0.31 -2.17 16 23 C -0.18 -5.50 5.65 22.71 0.13 -5.37 16 24 Br 0.01 0.17 33.74 -20.37 -0.69 -0.52 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 28 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 29 H 0.08 2.46 5.68 -2.39 -0.01 2.45 16 30 H 0.03 1.77 8.07 -2.39 -0.02 1.76 16 31 H 0.01 0.42 7.35 -2.38 -0.02 0.40 16 32 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.09 1.56 7.90 -2.39 -0.02 1.54 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -69.79 343.18 2.01 -67.77 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -0.87 Total: 10.09 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.26 Total: 3.36 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -2.64 Total: -97.39 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.07 Total: -29.74 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 35 Polarization: 0.17 SS G_CDS: -0.69 Total: -0.52 kcal Total: -69.79 2.01 -67.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264461787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.192 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds