Wall clock time and date at job start Tue Mar 31 2020 23:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99471 * 2 1 4 4 H 1.48496 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47262 * 299.99832 * 3 2 1 6 6 H 1.48499 * 109.47502 * 60.00080 * 3 2 1 7 7 C 1.37874 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99502 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46821 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46969 * 179.97438 * 10 9 7 12 12 S 1.65605 * 119.99974 * 165.00075 * 11 10 9 13 13 O 1.42103 * 106.39965 * 311.46233 * 12 11 10 14 14 O 1.42096 * 106.40118 * 178.54299 * 12 11 10 15 15 C 1.76199 * 107.21544 * 64.99927 * 12 11 10 16 16 C 1.38224 * 120.00755 * 115.02282 * 15 12 11 17 17 C 1.38224 * 120.02239 * 179.97438 * 16 15 12 18 18 C 1.50700 * 119.97132 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47268 * 89.99942 * 18 17 16 20 20 F 1.39899 * 109.46875 * 209.99726 * 18 17 16 21 21 F 1.39904 * 109.47353 * 329.99468 * 18 17 16 22 22 C 1.38270 * 120.05223 * 359.67395 * 17 16 15 23 23 C 1.38172 * 120.02408 * 0.60866 * 22 17 16 24 24 C 1.38437 * 120.01718 * 294.99918 * 15 12 11 25 25 F 1.35095 * 120.02529 * 0.04598 * 24 15 12 26 26 H 0.96990 * 120.00527 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46990 * 60.00309 * 9 7 2 28 28 H 1.08994 * 109.47117 * 299.99681 * 9 7 2 29 29 H 1.09001 * 109.47447 * 60.00222 * 10 9 7 30 30 H 1.09005 * 109.47340 * 300.00178 * 10 9 7 31 31 H 0.96991 * 120.00022 * 345.00804 * 11 10 9 32 32 H 1.07994 * 119.98928 * 359.97438 * 16 15 12 33 33 H 1.07998 * 119.98571 * 180.32279 * 22 17 16 34 34 H 1.08002 * 120.01574 * 179.69763 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0018 11 7 1.5131 -4.9307 -0.0012 12 16 2.2985 -6.3404 -0.3735 13 8 3.0269 -6.0905 -1.5678 14 8 1.3368 -7.3795 -0.2527 15 6 3.4948 -6.6201 0.8896 16 6 3.3756 -7.7154 1.7242 17 6 4.3141 -7.9354 2.7149 18 6 4.1827 -9.1297 3.6246 19 9 4.8605 -10.2185 3.0657 20 9 4.7357 -8.8275 4.8736 21 9 2.8301 -9.4518 3.7790 22 6 5.3768 -7.0641 2.8678 23 6 5.4947 -5.9653 2.0384 24 6 4.5546 -5.7433 1.0461 25 9 4.6718 -4.6722 0.2313 26 1 -0.4850 0.8399 -0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6250 -2.5571 0.8897 29 1 2.8729 -3.6046 0.8877 30 1 2.8716 -3.6037 -0.8923 31 1 0.5682 -4.9451 0.2171 32 1 2.5489 -8.3995 1.6023 33 1 6.1123 -7.2399 3.6388 34 1 6.3222 -5.2821 2.1611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273614895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:19 Heat of formation + Delta-G solvation = -245.482411 kcal Electronic energy + Delta-G solvation = -27651.914285 eV Core-core repulsion = 22790.524990 eV Total energy + Delta-G solvation = -4861.389295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.54229 -49.58534 -48.05506 -47.99534 -39.68229 -37.19084 -35.84022 -35.51935 -32.80734 -32.26347 -32.05912 -29.22387 -26.34316 -24.57882 -24.30998 -22.78394 -21.27119 -19.92667 -19.01147 -18.87514 -18.79625 -18.06136 -17.58580 -16.88158 -16.63083 -16.32347 -16.21075 -15.47696 -15.01615 -14.89203 -14.67607 -14.58419 -14.42058 -14.29270 -14.17306 -14.14257 -14.05769 -13.94204 -13.75848 -13.18214 -12.78395 -12.59196 -12.14990 -12.09909 -12.01462 -11.87790 -11.33020 -11.18686 -11.10900 -10.65061 -10.55497 -10.15830 -9.65907 -9.58202 -9.30211 -9.05668 -8.45480 -6.11804 -4.15361 -0.03410 0.31328 0.42509 2.19595 2.49382 3.08612 3.23083 3.25701 3.33830 3.37511 3.44641 3.55121 3.68678 3.99295 4.04853 4.26150 4.34840 4.39480 4.72771 4.86458 5.13640 5.17539 5.25227 5.28386 5.38879 5.63959 6.00323 6.08039 6.37339 6.64588 7.27079 7.50786 7.59055 7.86324 8.23576 8.90606 9.49576 10.99648 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.003182 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.572068 B = 8797.350662 C = 9384.373997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.114 3.886 11 N -1.104 6.104 12 S 2.692 3.308 13 O -0.942 6.942 14 O -0.960 6.960 15 C -0.718 4.718 16 C 0.056 3.944 17 C -0.223 4.223 18 C 0.515 3.485 19 F -0.174 7.174 20 F -0.174 7.174 21 F -0.171 7.171 22 C 0.008 3.992 23 C -0.172 4.172 24 C 0.234 3.766 25 F -0.100 7.100 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.420 0.580 32 H 0.165 0.835 33 H 0.154 0.846 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -17.442 7.814 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.021 4.021 10 C -0.010 4.010 11 N -0.867 5.867 12 S 2.777 3.223 13 O -0.932 6.932 14 O -0.950 6.950 15 C -0.801 4.801 16 C 0.037 3.963 17 C -0.225 4.225 18 C 0.461 3.539 19 F -0.155 7.155 20 F -0.156 7.156 21 F -0.153 7.153 22 C -0.010 4.010 23 C -0.191 4.191 24 C 0.213 3.787 25 F -0.077 7.077 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.256 0.744 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.263 -17.852 7.071 21.772 hybrid contribution 0.445 1.144 0.879 1.510 sum 10.708 -16.708 7.950 21.378 Atomic orbital electron populations 1.69963 1.06089 1.26819 1.50221 1.25001 0.94881 0.99395 0.94993 0.86478 0.80105 0.83427 0.77650 1.19597 1.20893 1.20985 1.21106 0.93253 0.90384 1.51518 0.92144 1.19307 0.94012 0.90490 0.98320 1.21904 0.96133 0.82382 1.00617 1.55487 1.21571 1.21904 1.87785 1.02159 0.73374 0.72916 0.73881 1.93635 1.73641 1.84882 1.41020 1.93574 1.59151 1.55500 1.86748 1.31405 1.18452 1.05477 1.24749 1.20617 0.95470 0.92711 0.87549 1.20096 1.01669 0.98839 1.01925 1.18051 0.74136 0.82810 0.78948 1.93248 1.80123 1.57112 1.85022 1.93205 1.85511 1.93084 1.43778 1.93232 1.32742 1.93559 1.95738 1.21072 0.94210 0.90275 0.95481 1.21290 1.01110 1.00334 0.96370 1.17296 0.92311 0.81966 0.87112 1.91743 1.95008 1.51362 1.69601 0.92841 0.95419 0.95732 0.93044 0.90717 0.74384 0.81731 0.82837 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -13.97 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.42 5.11 -27.88 -0.14 0.28 16 10 C 0.11 2.18 4.50 -4.04 -0.02 2.17 16 11 N -1.10 -17.68 6.00 -10.61 -0.06 -17.74 16 12 S 2.69 40.68 5.48 -107.50 -0.59 40.09 16 13 O -0.94 -16.98 16.90 -57.17 -0.97 -17.94 16 14 O -0.96 -15.19 16.97 -57.17 -0.97 -16.16 16 15 C -0.72 -9.20 5.89 -39.51 -0.23 -9.43 16 16 C 0.06 0.62 8.90 -39.59 -0.35 0.26 16 17 C -0.22 -2.14 5.45 -104.62 -0.57 -2.71 16 18 C 0.51 4.75 3.36 36.01 0.12 4.87 16 19 F -0.17 -1.64 17.30 2.25 0.04 -1.60 16 20 F -0.17 -1.54 16.47 2.25 0.04 -1.50 16 21 F -0.17 -1.72 16.46 2.25 0.04 -1.68 16 22 C 0.01 0.06 9.40 -39.59 -0.37 -0.31 16 23 C -0.17 -1.57 10.03 -39.52 -0.40 -1.96 16 24 C 0.23 2.91 6.80 -39.42 -0.27 2.64 16 25 F -0.10 -1.44 12.93 2.25 0.03 -1.41 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.91 6.74 -51.93 -0.35 0.56 16 30 H 0.07 1.47 7.25 -51.93 -0.38 1.09 16 31 H 0.42 6.10 8.65 -34.47 -0.30 5.80 16 32 H 0.17 1.65 6.88 -52.49 -0.36 1.29 16 33 H 0.15 0.76 7.61 -52.49 -0.40 0.36 16 34 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 324.19 15.07 4.89 4.89 Total: -1.00 -32.01 324.19 -7.08 -39.09 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -2.59 Total: 0.09 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -2.64 Total: -16.97 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.67 Total: -42.67 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.94 Total: -34.10 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.14 Total: -6.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 40.68 SS G_CDS: -0.59 Total: 40.09 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.01 -7.08 -39.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273614895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.391 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds