Wall clock time and date at job start Tue Mar 31 2020 23:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46904 * 296.50864 * 3 2 1 5 5 C 1.36938 * 120.00192 * 275.30971 * 4 3 2 6 6 H 1.07998 * 120.00130 * 144.74249 * 5 4 3 7 7 C 1.38818 * 119.99749 * 324.74670 * 5 4 3 8 8 N 1.31623 * 119.99732 * 155.36018 * 7 5 4 9 9 Si 1.86796 * 120.00181 * 335.36287 * 7 5 4 10 10 H 1.48506 * 109.47247 * 91.17184 * 9 7 5 11 11 H 1.48501 * 109.47207 * 211.17033 * 9 7 5 12 12 H 1.48498 * 109.47073 * 331.17538 * 9 7 5 13 13 S 1.65600 * 120.00019 * 95.31382 * 4 3 2 14 14 O 1.42103 * 106.40150 * 344.34954 * 13 4 3 15 15 O 1.42098 * 106.40314 * 211.42757 * 13 4 3 16 16 C 1.76210 * 107.21877 * 97.88694 * 13 4 3 17 17 C 1.37974 * 119.90906 * 111.52840 * 16 13 4 18 18 C 1.39605 * 119.89908 * 180.02562 * 17 16 13 19 19 C 1.47732 * 120.13951 * 179.97438 * 18 17 16 20 20 O 1.21470 * 119.99748 * 359.97438 * 19 18 17 21 21 O 1.34712 * 119.99924 * 179.97438 * 19 18 17 22 22 C 1.39622 * 119.72444 * 0.02562 * 18 17 16 23 23 C 1.38153 * 119.81936 * 359.97438 * 22 18 17 24 24 F 1.35109 * 119.95150 * 180.02562 * 23 22 18 25 25 C 1.38308 * 119.90813 * 291.25837 * 16 13 4 26 26 C 1.50692 * 119.86239 * 359.97438 * 25 16 13 27 27 H 4.40637 * 5.51438 * 179.97438 * 4 1 2 28 28 H 1.08996 * 109.47212 * 176.50910 * 3 2 1 29 29 H 1.08995 * 109.47167 * 56.50704 * 3 2 1 30 30 H 0.96993 * 119.99901 * 179.97438 * 8 7 5 31 31 H 1.08004 * 120.04931 * 359.97438 * 17 16 13 32 32 H 0.96698 * 116.99260 * 180.02562 * 21 19 18 33 33 H 1.07995 * 120.09063 * 180.02562 * 22 18 17 34 34 H 1.09005 * 109.47011 * 84.79746 * 26 25 16 35 35 H 1.09004 * 109.47512 * 204.79803 * 26 25 16 36 36 H 1.09000 * 109.47632 * 324.80018 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.6156 1.2360 5 6 3.2590 0.1366 2.3735 6 1 3.0553 -0.3048 3.3378 7 6 3.6468 1.4667 2.2870 8 7 3.3167 2.3118 3.2406 9 14 4.6371 2.0572 0.8173 10 1 3.7133 2.5420 -0.2396 11 1 5.5337 3.1641 1.2369 12 1 5.4514 0.9348 0.2860 13 16 3.5364 -2.2220 1.2576 14 8 2.9671 -2.7938 0.0880 15 8 3.2516 -2.6893 2.5690 16 6 5.2846 -2.3250 1.0615 17 6 6.0703 -2.7564 2.1104 18 6 7.4553 -2.8374 1.9550 19 6 8.3017 -3.2980 3.0747 20 8 7.7928 -3.6068 4.1336 21 8 9.6378 -3.3756 2.9214 22 6 8.0373 -2.4802 0.7372 23 6 7.2396 -2.0497 -0.3055 24 9 7.8000 -1.7039 -1.4852 25 6 5.8647 -1.9785 -0.1452 26 6 4.9991 -1.5146 -1.2882 27 1 -1.0499 0.0001 0.0002 28 1 3.0089 1.0265 -0.0626 29 1 3.0096 -0.5662 -0.8570 30 1 3.5880 3.2411 3.1803 31 1 5.6146 -3.0302 3.0506 32 1 10.1498 -3.6829 3.6821 33 1 9.1081 -2.5410 0.6103 34 1 4.8073 -0.4462 -1.1883 35 1 5.5102 -1.7053 -2.2319 36 1 4.0535 -2.0565 -1.2711 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313408520.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:33 Heat of formation + Delta-G solvation = -120.429513 kcal Electronic energy + Delta-G solvation = -28309.909773 eV Core-core repulsion = 23995.799919 eV Total energy + Delta-G solvation = -4314.109854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.12321 -41.60997 -39.94074 -38.47417 -38.06932 -37.22367 -36.69628 -34.56277 -34.34191 -33.22726 -32.09078 -29.34652 -28.34372 -26.06059 -24.83644 -24.70162 -22.42642 -20.54040 -20.20948 -19.73590 -19.19514 -18.64931 -18.31363 -17.78271 -17.51713 -17.34404 -17.05602 -16.89897 -16.65403 -16.61885 -16.08669 -15.44091 -15.08615 -14.94569 -14.70859 -14.58952 -14.58343 -14.32850 -13.81271 -13.52969 -13.26576 -13.10539 -13.07026 -13.00197 -12.74052 -12.69094 -12.58466 -12.47080 -12.08874 -12.00217 -11.62900 -11.39126 -11.19047 -10.74360 -10.62889 -10.29801 -10.02548 -8.66498 -6.20049 -0.85993 -0.54120 -0.33743 1.08955 1.18983 1.33106 1.40319 1.72510 1.78334 1.99435 2.11605 2.14054 2.41405 2.70210 2.83253 2.90504 3.31895 3.51484 3.55709 3.61509 3.65409 3.86624 4.09357 4.26386 4.30166 4.31031 4.40206 4.42760 4.56355 4.79640 4.85198 4.89619 5.06559 5.18510 5.40728 5.44089 5.46143 6.10647 6.77354 6.80488 6.82752 6.87515 8.44687 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.005295 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.005084 B = 5286.558519 C = 5363.813945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.230 4.230 3 C 0.197 3.803 4 N -0.828 5.828 5 C -0.283 4.283 6 H 0.083 0.917 7 C 0.037 3.963 8 N -0.861 5.861 9 Si 0.904 3.096 10 H -0.235 1.235 11 H -0.279 1.279 12 H -0.230 1.230 13 S 2.577 3.423 14 O -0.989 6.989 15 O -0.996 6.996 16 C -0.664 4.664 17 C 0.018 3.982 18 C -0.139 4.139 19 C 0.543 3.457 20 O -0.539 6.539 21 O -0.492 6.492 22 C -0.034 4.034 23 C 0.061 3.939 24 F -0.122 7.122 25 C 0.013 3.987 26 C -0.198 4.198 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.289 0.711 31 H 0.141 0.859 32 H 0.439 0.561 33 H 0.192 0.808 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.272 -3.852 -9.900 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.232 4.232 3 C 0.073 3.927 4 N -0.653 5.653 5 C -0.428 4.428 6 H 0.101 0.899 7 C -0.176 4.176 8 N -0.497 5.497 9 Si 0.726 3.274 10 H -0.160 1.160 11 H -0.205 1.205 12 H -0.153 1.153 13 S 2.679 3.321 14 O -0.979 6.979 15 O -0.987 6.987 16 C -0.745 4.745 17 C -0.001 4.001 18 C -0.141 4.141 19 C 0.387 3.613 20 O -0.430 6.430 21 O -0.307 6.307 22 C -0.053 4.053 23 C 0.042 3.958 24 F -0.100 7.100 25 C 0.010 3.990 26 C -0.254 4.254 27 H 0.272 0.728 28 H 0.108 0.892 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.159 0.841 32 H 0.302 0.698 33 H 0.209 0.791 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.494 -4.586 -9.914 14.472 hybrid contribution 1.199 0.477 0.531 1.395 sum 10.693 -4.109 -9.383 14.808 Atomic orbital electron populations 1.25757 0.96709 0.99316 0.98172 1.23761 0.95495 1.01870 1.02094 1.18980 0.85514 1.00790 0.87419 1.53514 1.67893 1.29050 1.14823 1.18879 1.43991 0.93654 0.86269 0.89891 1.26270 0.95256 0.95859 1.00217 1.69913 1.39009 1.05213 1.35555 0.86580 0.80371 0.80283 0.80207 1.16024 1.20526 1.15274 1.08698 0.74923 0.75933 0.72530 1.93308 1.77503 1.78342 1.48714 1.93389 1.84237 1.80976 1.40081 1.31522 1.30316 1.13354 0.99345 1.21073 0.92605 0.88886 0.97580 1.18955 0.92241 1.08771 0.94133 1.20360 0.81753 0.73360 0.85791 1.90934 1.75473 1.47272 1.29342 1.84466 1.17553 1.79878 1.48791 1.21809 1.02586 0.91515 0.89372 1.17352 0.90427 1.04702 0.83366 1.91527 1.84884 1.89972 1.43633 1.19978 0.93704 0.91028 0.94242 1.22168 1.02501 1.03790 0.96910 0.72850 0.89185 0.85498 0.90055 0.84106 0.69790 0.79119 0.88218 0.86497 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.05 19.25 74.32 1.43 -4.62 16 2 C -0.23 -9.03 13.63 31.12 0.42 -8.61 16 3 C 0.20 7.67 3.91 84.57 0.33 8.00 16 4 N -0.83 -37.32 2.47 -352.53 -0.87 -38.19 16 5 C -0.28 -14.54 9.58 84.03 0.81 -13.74 16 6 H 0.08 4.86 7.63 -2.91 -0.02 4.83 16 7 C 0.04 1.81 5.30 84.86 0.45 2.26 16 8 N -0.86 -45.15 13.97 21.65 0.30 -44.85 16 9 Si 0.90 35.10 25.09 68.60 1.72 36.82 16 10 H -0.23 -8.14 6.45 99.48 0.64 -7.50 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.23 -8.10 6.11 99.48 0.61 -7.49 16 13 S 2.58 114.80 5.07 -56.49 -0.29 114.51 16 14 O -0.99 -42.86 14.06 -128.00 -1.80 -44.66 16 15 O -1.00 -51.59 16.04 -128.00 -2.05 -53.64 16 16 C -0.66 -25.55 5.91 22.22 0.13 -25.42 16 17 C 0.02 0.68 9.09 22.54 0.20 0.88 16 18 C -0.14 -4.20 5.87 -20.10 -0.12 -4.32 16 19 C 0.54 14.81 8.27 70.33 0.58 15.39 16 20 O -0.54 -18.64 17.13 19.93 0.34 -18.30 16 21 O -0.49 -8.22 12.68 -56.22 -0.71 -8.93 16 22 C -0.03 -0.85 9.60 22.58 0.22 -0.63 16 23 C 0.06 1.71 7.23 22.34 0.16 1.87 16 24 F -0.12 -3.00 16.38 44.97 0.74 -2.27 16 25 C 0.01 0.41 5.88 -19.76 -0.12 0.30 16 26 C -0.20 -5.67 7.86 71.23 0.56 -5.11 16 27 H 0.26 5.75 7.80 -4.42 -0.03 5.71 16 28 H 0.09 3.39 2.81 -2.39 -0.01 3.38 16 29 H 0.13 4.17 4.10 -2.39 -0.01 4.16 16 30 H 0.29 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.14 5.78 6.91 -2.91 -0.02 5.76 16 32 H 0.44 3.04 9.11 -74.06 -0.67 2.37 16 33 H 0.19 3.23 7.61 -2.91 -0.02 3.21 16 34 H 0.10 2.70 5.34 -2.38 -0.01 2.69 16 35 H 0.12 2.58 7.49 -2.39 -0.02 2.56 16 36 H 0.12 3.67 4.04 -2.39 -0.01 3.66 16 Total: -1.00 -69.78 325.10 2.80 -66.99 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.35 Total: 26.25 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 5.06 Total: -33.75 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -0.57 Total: -83.04 kcal Atomic # 8 Polarization: -121.30 SS G_CDS: -4.22 Total: -125.52 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.74 Total: -2.27 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 1.72 Total: 36.82 kcal Atomic # 16 Polarization: 114.80 SS G_CDS: -0.29 Total: 114.51 kcal Total: -69.78 2.80 -66.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313408520.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.443 kcal (2) G-P(sol) polarization free energy of solvation -69.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds