Wall clock time and date at job start Tue Mar 31 2020 23:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47410 * 2 1 4 4 C 1.50700 * 109.47027 * 120.00223 * 2 1 3 5 5 N 1.35630 * 126.42799 * 300.02299 * 4 2 1 6 6 H 0.97001 * 124.92950 * 359.92336 * 5 4 2 7 7 N 1.28470 * 110.14380 * 179.97438 * 5 4 2 8 8 C 1.31868 * 110.12242 * 0.02562 * 7 5 4 9 9 C 1.47566 * 126.47140 * 179.97438 * 8 7 5 10 10 O 1.21610 * 120.00254 * 174.08906 * 9 8 7 11 11 N 1.34783 * 119.99783 * 354.08585 * 9 8 7 12 12 C 1.36915 * 119.99857 * 185.28853 * 11 9 8 13 13 H 1.08001 * 120.00284 * 225.00254 * 12 11 9 14 14 C 1.39015 * 120.00167 * 45.00791 * 12 11 9 15 15 N 1.31386 * 119.99760 * 6.61693 * 14 12 11 16 16 Si 1.86795 * 120.00150 * 186.62055 * 14 12 11 17 17 H 1.48493 * 109.47244 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47143 * 119.99958 * 16 14 12 19 19 H 1.48506 * 109.47015 * 239.99670 * 16 14 12 20 20 C 1.46498 * 120.00150 * 5.29259 * 11 9 8 21 21 C 1.52993 * 117.50069 * 182.36144 * 20 11 9 22 22 C 1.53001 * 60.00519 * 252.51303 * 21 20 11 23 23 C 1.35432 * 126.42464 * 119.71047 * 4 2 1 24 24 Br 1.89101 * 127.23838 * 0.03150 * 23 4 2 25 25 H 1.09006 * 109.46905 * 300.00097 * 1 2 3 26 26 H 1.09003 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47117 * 59.99663 * 1 2 3 28 28 H 1.09006 * 109.46905 * 239.99902 * 2 1 3 29 29 H 1.08997 * 109.47001 * 59.99949 * 3 2 1 30 30 H 1.08994 * 109.47117 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46756 * 300.00313 * 3 2 1 32 32 H 0.96998 * 120.00163 * 185.00030 * 15 14 12 33 33 H 1.08998 * 115.55110 * 328.07672 * 20 11 9 34 34 H 1.09000 * 117.50086 * 0.02562 * 21 20 11 35 35 H 1.08999 * 117.50015 * 145.02252 * 21 20 11 36 36 H 1.08996 * 117.49697 * 252.51667 * 22 21 20 37 37 H 1.08998 * 117.52181 * 107.47896 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7860 -0.3629 2.5181 6 1 1.2499 0.3964 2.7956 7 7 2.3665 -1.1846 3.3170 8 6 3.0168 -2.1030 2.6294 9 6 3.8064 -3.2191 3.1846 10 8 4.2713 -4.0632 2.4428 11 7 4.0125 -3.3030 4.5139 12 6 4.8337 -4.2750 5.0194 13 1 4.5282 -4.8435 5.8853 14 6 6.0608 -4.5301 4.4180 15 7 6.4907 -3.7553 3.4479 16 14 7.0984 -5.9746 4.9890 17 1 6.3957 -6.6854 6.0872 18 1 7.3155 -6.9074 3.8541 19 1 8.4094 -5.4789 5.4800 20 6 3.3578 -2.3542 5.4180 21 6 3.6751 -2.4665 6.9104 22 6 2.3081 -2.9079 6.3837 23 6 2.8096 -1.8192 1.2578 24 35 3.4809 -2.7830 -0.2242 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 7.3112 -3.9746 2.9795 33 1 3.1916 -1.3563 5.0122 34 1 4.3713 -3.2461 7.2197 35 1 3.7179 -1.5424 7.4869 36 1 1.4517 -2.2741 6.6135 37 1 2.1044 -3.9780 6.3461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331469691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:43 Heat of formation + Delta-G solvation = 85.368982 kcal Electronic energy + Delta-G solvation = -22333.336376 eV Core-core repulsion = 18967.432278 eV Total energy + Delta-G solvation = -3365.904098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.25744 -38.21790 -35.84924 -35.71327 -32.79644 -31.90197 -31.01344 -29.91550 -28.59947 -27.37193 -25.34416 -23.26572 -22.10904 -21.50480 -20.83961 -20.26470 -18.88693 -17.24358 -16.26286 -15.92994 -15.36244 -15.13271 -14.56011 -14.18301 -14.00890 -13.52719 -13.30201 -13.10787 -12.81240 -12.69736 -12.43431 -11.78858 -11.60823 -11.41675 -11.24280 -11.05933 -10.91488 -10.79927 -10.70774 -10.49573 -10.46453 -10.08121 -9.80033 -9.49160 -9.30341 -8.71968 -8.66385 -8.24388 -7.97599 -6.92406 -5.97520 -3.83191 2.08251 2.22817 2.55282 3.30792 3.35479 3.42049 3.44599 4.27620 4.45146 4.64871 4.65984 4.93030 4.93685 5.05548 5.20653 5.32267 5.35804 5.44802 5.48013 5.56851 5.70937 5.82331 5.85209 5.89902 5.98730 6.04222 6.10634 6.27901 6.37268 6.50463 6.67244 6.97772 7.07634 7.36061 7.67718 8.26877 8.37640 9.12942 9.26669 9.69806 10.39155 11.05355 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.005452 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.114010 B = 5134.204359 C = 6600.366907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C -0.146 4.146 4 C 0.047 3.953 5 N -0.394 5.394 6 H 0.439 0.561 7 N -0.267 5.267 8 C 0.064 3.936 9 C 0.547 3.453 10 O -0.498 6.498 11 N -0.414 5.414 12 C -0.330 4.330 13 H 0.080 0.920 14 C 0.060 3.940 15 N -0.824 5.824 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.285 1.285 20 C 0.077 3.923 21 C -0.182 4.182 22 C -0.204 4.204 23 C -0.160 4.160 24 Br 0.001 6.999 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.265 0.735 33 H 0.132 0.868 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.928 10.584 -6.524 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 C -0.204 4.204 4 C -0.083 4.083 5 N -0.106 5.106 6 H 0.282 0.718 7 N -0.101 5.101 8 C -0.100 4.100 9 C 0.332 3.668 10 O -0.371 6.371 11 N -0.135 5.135 12 C -0.458 4.458 13 H 0.098 0.902 14 C -0.150 4.150 15 N -0.458 5.458 16 Si 0.740 3.260 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.211 1.211 20 C -0.029 4.029 21 C -0.220 4.220 22 C -0.243 4.243 23 C -0.251 4.251 24 Br 0.085 6.915 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.444 10.131 -6.467 15.923 hybrid contribution 0.293 -0.157 0.075 0.341 sum -10.151 9.973 -6.392 15.600 Atomic orbital electron populations 1.21857 0.93836 1.02654 1.01989 1.19831 0.95977 0.95803 0.93478 1.21857 1.02079 0.94481 1.01973 1.21049 1.02070 0.97382 0.87752 1.43383 1.39753 1.24416 1.03005 0.71765 1.73866 1.12574 1.03293 1.20338 1.22868 1.00087 0.97170 0.89919 1.16491 0.82682 0.84349 0.83259 1.90677 1.49238 1.39842 1.57346 1.42557 1.41087 1.26975 1.02897 1.18969 0.96600 1.14304 1.15931 0.90231 1.25320 0.96164 0.97288 0.96272 1.69857 1.21194 1.34831 1.19951 0.86126 0.79586 0.81761 0.78558 1.19597 1.20688 1.21120 1.22273 0.97967 0.95256 0.87431 1.23087 0.98784 1.02691 0.97431 1.23200 0.92496 1.01103 1.07551 1.21600 1.08840 1.00472 0.94143 1.96547 1.86514 1.73957 1.34482 0.92890 0.91887 0.91604 0.88158 0.92896 0.91818 0.91593 0.92489 0.85098 0.87787 0.90067 0.90105 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.18 37.16 0.34 -0.89 16 2 C -0.03 -0.33 3.32 -91.77 -0.30 -0.63 16 3 C -0.15 -1.28 9.18 37.16 0.34 -0.94 16 4 C 0.05 0.70 5.76 -81.91 -0.47 0.23 16 5 N -0.39 -5.62 6.86 33.61 0.23 -5.39 16 6 H 0.44 4.33 8.96 -190.44 -1.71 2.62 16 7 N -0.27 -5.05 8.67 33.41 0.29 -4.76 16 8 C 0.06 1.44 6.88 -82.77 -0.57 0.87 16 9 C 0.55 14.86 6.77 -12.45 -0.08 14.77 16 10 O -0.50 -14.90 13.31 5.27 0.07 -14.83 16 11 N -0.41 -10.98 2.85 -108.89 -0.31 -11.29 16 12 C -0.33 -9.22 7.93 -14.99 -0.12 -9.34 16 13 H 0.08 2.15 7.20 -52.49 -0.38 1.77 16 14 C 0.06 1.70 4.75 -17.45 -0.08 1.62 16 15 N -0.82 -24.73 11.14 55.50 0.62 -24.11 16 16 Si 0.91 21.94 29.56 -169.99 -5.03 16.91 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.08 1.70 5.49 -67.93 -0.37 1.32 16 21 C -0.18 -3.53 9.80 -26.73 -0.26 -3.80 16 22 C -0.20 -3.87 10.37 -26.73 -0.28 -4.14 16 23 C -0.16 -3.14 6.67 -39.31 -0.26 -3.40 16 24 Br 0.00 0.03 31.91 -68.01 -2.17 -2.14 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 1.12 7.34 -51.93 -0.38 0.74 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.26 7.62 8.32 -40.82 -0.34 7.28 16 33 H 0.13 2.78 5.32 -51.93 -0.28 2.50 16 34 H 0.10 2.17 6.72 -51.93 -0.35 1.82 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -33.90 328.85 -9.50 -43.40 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.03 Total: 1.59 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.12 Total: -4.33 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.83 Total: -45.55 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.07 Total: -14.83 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.17 Total: -2.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.90 -9.50 -43.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331469691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.764 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds