Wall clock time and date at job start Tue Mar 31 2020 23:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35916 * 117.00226 * 2 1 4 4 C 1.38715 * 120.06021 * 359.73125 * 3 2 1 5 5 C 1.38141 * 119.95369 * 180.27544 * 4 3 2 6 6 C 1.38282 * 120.07490 * 359.96910 * 5 4 3 7 7 C 1.50698 * 119.94354 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47169 * 270.02156 * 7 6 5 9 9 C 1.50698 * 109.47550 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99468 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00479 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00277 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47113 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00116 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99747 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00074 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99965 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47183 * 89.99882 * 17 15 13 19 19 H 1.48506 * 109.46792 * 209.99512 * 17 15 13 20 20 H 1.48496 * 109.47366 * 329.99807 * 17 15 13 21 21 C 1.38247 * 120.11551 * 0.04735 * 6 5 4 22 22 C 1.38235 * 120.04531 * 359.95795 * 21 6 5 23 23 Br 1.89099 * 120.03561 * 179.97438 * 22 21 6 24 24 H 1.09001 * 109.46624 * 300.00353 * 1 2 3 25 25 H 1.09001 * 109.46710 * 59.99412 * 1 2 3 26 26 H 1.08993 * 109.47502 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.02260 * 0.24235 * 4 3 2 28 28 H 1.08001 * 119.96418 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.46989 * 30.02065 * 7 6 5 30 30 H 1.08999 * 109.47416 * 150.02566 * 7 6 5 31 31 H 1.08999 * 109.47545 * 300.00469 * 8 7 6 32 32 H 1.09004 * 109.47057 * 59.99764 * 8 7 6 33 33 H 0.97004 * 120.00151 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.46898 * 299.99716 * 12 11 9 35 35 H 1.08990 * 109.47220 * 59.99868 * 12 11 9 36 36 H 0.97000 * 120.00359 * 179.97438 * 16 15 13 37 37 H 1.07993 * 119.97543 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2919 2.3752 -0.0056 5 6 1.9214 3.6048 -0.0114 6 6 3.3024 3.6764 -0.0109 7 6 3.9860 5.0193 -0.0166 8 6 4.2178 5.4675 -1.4609 9 6 4.9020 6.8102 -1.4667 10 8 5.1767 7.3553 -0.4186 11 7 5.2076 7.4058 -2.6364 12 6 5.8733 8.7109 -2.6419 13 6 6.1014 9.1524 -4.0647 14 1 5.7821 8.5239 -4.8829 15 6 6.7168 10.3591 -4.3217 16 7 6.9164 10.7442 -5.5633 17 14 7.2685 11.4463 -2.9064 18 1 8.6620 11.0987 -2.5292 19 1 7.2092 12.8703 -3.3240 20 1 6.3728 11.2345 -1.7411 21 6 4.0570 2.5180 -0.0056 22 6 3.4321 1.2849 0.0000 23 35 4.4645 -0.2993 0.0065 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2133 2.3203 -0.0061 28 1 1.3344 4.5113 -0.0162 29 1 3.3576 5.7491 0.4939 30 1 4.9439 4.9417 0.4978 31 1 4.8461 4.7378 -1.9715 32 1 3.2599 5.5452 -1.9754 33 1 4.9875 6.9701 -3.4746 34 1 5.2457 9.4410 -2.1308 35 1 6.8313 8.6323 -2.1283 36 1 7.3490 11.5933 -5.7442 37 1 5.1353 2.5765 -0.0056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352693712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:43 Heat of formation + Delta-G solvation = -60.615373 kcal Electronic energy + Delta-G solvation = -20251.034217 eV Core-core repulsion = 16846.507011 eV Total energy + Delta-G solvation = -3404.527205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58900 -39.11005 -38.02359 -34.41513 -33.71089 -32.45587 -32.31922 -30.00952 -29.45207 -28.14802 -27.31555 -24.44258 -22.82220 -22.01925 -20.97054 -19.77577 -18.54153 -17.32511 -16.83880 -16.20211 -16.12419 -15.37814 -15.25401 -15.12049 -14.63451 -14.23515 -14.06876 -13.83308 -13.48505 -13.18019 -12.94631 -12.43637 -12.34586 -12.27043 -12.01163 -11.65612 -11.41267 -11.32409 -11.03177 -10.92660 -10.89996 -10.76530 -10.38307 -9.98386 -9.50866 -9.26819 -9.13237 -8.78973 -8.38483 -8.16205 -6.22506 -4.24865 0.79274 0.98994 1.44675 2.81758 3.21763 3.24601 3.26665 3.32729 3.40825 3.98459 4.32391 4.37815 4.47243 4.68391 4.73989 4.81054 4.95054 5.01341 5.08556 5.12061 5.12925 5.22696 5.42289 5.44395 5.72690 5.74614 5.82665 5.90607 6.12794 6.32344 6.36946 6.79885 6.87588 7.06031 7.21351 7.38538 8.12131 8.50855 8.74009 8.92348 9.37655 10.89449 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.022175 B = 0.002131 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.408302 B =13138.102896 C =13667.252813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.146 3.854 4 C -0.201 4.201 5 C -0.060 4.060 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.136 4.136 9 C 0.498 3.502 10 O -0.561 6.561 11 N -0.706 5.706 12 C 0.219 3.781 13 C -0.544 4.544 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.892 5.892 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 C -0.049 4.049 22 C -0.123 4.123 23 Br -0.041 7.041 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.025 0.975 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 -25.020 12.093 30.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.098 3.902 4 C -0.220 4.220 5 C -0.078 4.078 6 C -0.108 4.108 7 C -0.098 4.098 8 C -0.176 4.176 9 C 0.284 3.716 10 O -0.441 6.441 11 N -0.355 5.355 12 C 0.097 3.903 13 C -0.582 4.582 14 H 0.097 0.903 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.069 4.069 22 C -0.203 4.203 23 Br 0.044 6.956 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.230 0.770 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.331 -25.248 12.701 30.835 hybrid contribution -0.280 0.913 0.052 0.957 sum -12.611 -24.335 12.752 30.230 Atomic orbital electron populations 1.23118 0.78030 1.04252 1.01546 1.86179 1.21542 1.25977 1.88140 1.18604 0.90715 0.85069 0.95762 1.21211 1.00193 0.91724 1.08914 1.21054 0.94089 0.97362 0.95319 1.19915 0.93467 0.95211 1.02203 1.20284 1.01543 0.91844 0.96140 1.21665 1.02076 0.95587 0.98309 1.20551 0.79669 0.87029 0.84376 1.90652 1.55298 1.66378 1.31745 1.46215 1.59364 1.22413 1.07458 1.19488 0.92401 0.80201 0.98189 1.21101 1.40915 1.05648 0.90522 0.90261 1.24808 0.94762 0.97313 0.95796 1.69881 1.42303 1.22198 1.18589 0.86809 0.79999 0.79855 0.82975 1.19839 1.20905 1.18514 1.20948 1.00569 0.89365 0.96021 1.21019 0.91164 0.93203 1.14892 1.96694 1.69312 1.31766 1.97844 0.92452 0.92380 0.87972 0.84666 0.84852 0.89906 0.89932 0.89092 0.89145 0.76959 0.95744 0.96187 0.92255 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.86 9.83 -19.48 -0.19 -3.05 16 3 C 0.15 1.47 6.68 -39.20 -0.26 1.21 16 4 C -0.20 -1.71 9.04 -39.44 -0.36 -2.07 16 5 C -0.06 -0.54 9.69 -39.60 -0.38 -0.92 16 6 C -0.11 -1.08 5.13 -104.60 -0.54 -1.62 16 7 C -0.06 -0.69 4.63 -27.89 -0.13 -0.82 16 8 C -0.14 -1.69 5.68 -27.89 -0.16 -1.84 16 9 C 0.50 9.00 7.83 -10.99 -0.09 8.92 16 10 O -0.56 -12.22 15.98 5.55 0.09 -12.13 16 11 N -0.71 -13.97 5.55 -61.47 -0.34 -14.31 16 12 C 0.22 5.36 4.50 -5.19 -0.02 5.33 16 13 C -0.54 -14.86 9.83 -34.44 -0.34 -15.19 16 14 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 17 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 21 C -0.05 -0.51 9.44 -39.58 -0.37 -0.88 16 22 C -0.12 -1.33 6.24 -39.38 -0.25 -1.57 16 23 Br -0.04 -0.43 33.16 -68.01 -2.26 -2.69 16 24 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 25 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.14 0.81 6.30 -52.49 -0.33 0.48 16 28 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 30 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 6.89 8.32 -40.82 -0.34 6.55 16 34 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -32.84 338.16 -8.26 -41.10 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.76 Total: 1.21 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.00 Total: -6.26 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.43 Total: -39.97 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.10 Total: -15.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.26 Total: -2.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.84 -8.26 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352693712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.517 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds