Wall clock time and date at job start Tue Mar 31 2020 23:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.38542 * 119.99875 * 179.97438 * 10 9 7 12 12 C 1.41048 * 120.29861 * 0.02562 * 11 10 9 13 13 N 1.30437 * 120.39755 * 179.97438 * 12 11 10 14 14 N 1.39871 * 121.02039 * 0.02562 * 13 12 11 15 15 C 1.40032 * 119.72529 * 180.02562 * 14 13 12 16 16 C 1.38859 * 120.05812 * 124.72716 * 15 14 13 17 17 C 1.38100 * 119.97313 * 179.70473 * 16 15 14 18 18 C 1.38524 * 120.09208 * 0.57701 * 17 16 15 19 19 F 1.35100 * 119.94127 * 179.74735 * 18 17 16 20 20 C 1.38453 * 120.11735 * 359.71875 * 18 17 16 21 21 C 1.38307 * 120.02458 * 359.97438 * 20 18 17 22 22 F 1.35101 * 120.04377 * 180.02562 * 21 20 18 23 23 C 1.34762 * 120.55917 * 0.02562 * 14 13 12 24 24 O 1.22170 * 120.20288 * 180.02562 * 23 14 13 25 25 C 1.38369 * 120.29810 * 179.72671 * 11 10 9 26 26 Cl 1.73604 * 120.48689 * 359.97438 * 25 11 10 27 27 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 29 29 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 30 30 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.80565 * 359.97438 * 12 11 10 32 32 H 1.07993 * 120.01779 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.95106 * 180.29584 * 17 16 15 34 34 H 1.08006 * 119.99182 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7410 -4.9189 0.0011 12 6 0.3557 -5.1838 0.0011 13 7 -0.0813 -6.4128 0.0011 14 7 0.8066 -7.4935 0.0016 15 6 0.3078 -8.8020 0.0011 16 6 0.7006 -9.6956 -0.9865 17 6 0.2123 -10.9874 -0.9819 18 6 -0.6782 -11.3898 -0.0001 19 9 -1.1579 -12.6527 -0.0014 20 6 -1.0772 -10.5001 0.9829 21 6 -0.5863 -9.2071 0.9865 22 9 -0.9749 -8.3387 1.9458 23 6 2.1382 -7.2862 0.0027 24 8 2.9079 -8.2350 0.0026 25 6 2.6347 -5.9753 -0.0046 26 17 4.3457 -5.6815 -0.0132 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 0.8903 29 1 0.6246 -2.5571 -0.8897 30 1 3.1566 -3.4355 0.0009 31 1 -0.3476 -4.3642 0.0011 32 1 1.3910 -9.3819 -1.7554 33 1 0.5218 -11.6835 -1.7474 34 1 -1.7713 -10.8161 1.7476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362662297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:10 Heat of formation + Delta-G solvation = -48.645248 kcal Electronic energy + Delta-G solvation = -26043.450996 eV Core-core repulsion = 21639.242681 eV Total energy + Delta-G solvation = -4404.208315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.15152 -50.07504 -42.42353 -39.97892 -39.00273 -37.89705 -37.09095 -35.16233 -34.10074 -32.07785 -32.01098 -30.39132 -28.70446 -26.08187 -25.40618 -24.53625 -23.72153 -23.01137 -20.09920 -19.83587 -19.24824 -18.85452 -18.40307 -17.88210 -17.17587 -17.02965 -16.91505 -16.74797 -16.61951 -16.39237 -15.98344 -15.60823 -15.52748 -15.23667 -15.18542 -14.62114 -14.34276 -14.09944 -13.98696 -13.60202 -13.40458 -13.11928 -12.89359 -12.81431 -12.66888 -12.58735 -12.21122 -11.99058 -11.86461 -11.52094 -11.14962 -10.77011 -10.53569 -10.18329 -9.53406 -8.87228 -8.32750 -6.44063 -0.80858 -0.28384 -0.14532 0.66220 0.66742 1.24229 1.42719 1.46835 1.56015 2.04663 2.14241 2.23525 2.42096 2.66960 3.05546 3.08248 3.15002 3.43379 3.54886 3.64120 3.79988 3.96333 4.10155 4.41129 4.55679 4.60610 4.73086 4.85126 4.88827 4.91085 5.05965 5.20159 5.45740 5.59387 5.77999 5.93847 6.25717 6.42359 6.69219 6.71470 7.27203 8.77667 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.002748 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.269124 B =10185.754197 C =11213.436821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.561 4.561 8 H 0.068 0.932 9 C 0.242 3.758 10 N -0.661 5.661 11 C 0.271 3.729 12 C 0.094 3.906 13 N -0.192 5.192 14 N -0.389 5.389 15 C 0.084 3.916 16 C -0.044 4.044 17 C -0.135 4.135 18 C 0.138 3.862 19 F -0.124 7.124 20 C -0.174 4.174 21 C 0.127 3.873 22 F -0.130 7.130 23 C 0.538 3.462 24 O -0.559 6.559 25 C -0.290 4.290 26 Cl -0.034 7.034 27 H 0.271 0.729 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.410 0.590 31 H 0.227 0.773 32 H 0.148 0.852 33 H 0.182 0.818 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -17.430 -1.379 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.598 4.598 8 H 0.086 0.914 9 C 0.121 3.879 10 N -0.279 5.279 11 C 0.144 3.856 12 C -0.109 4.109 13 N -0.003 5.003 14 N -0.204 5.204 15 C -0.007 4.007 16 C -0.065 4.065 17 C -0.154 4.154 18 C 0.118 3.882 19 F -0.102 7.102 20 C -0.194 4.194 21 C 0.106 3.894 22 F -0.108 7.108 23 C 0.338 3.662 24 O -0.439 6.439 25 C -0.337 4.337 26 Cl -0.006 7.006 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.248 0.752 31 H 0.243 0.757 32 H 0.166 0.834 33 H 0.199 0.801 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.180 -18.150 -1.337 18.475 hybrid contribution 1.506 1.767 0.332 2.345 sum -1.674 -16.383 -1.005 16.499 Atomic orbital electron populations 1.69984 1.07176 1.28581 1.49396 1.25611 0.95696 1.02513 0.93972 0.85406 0.78956 0.78984 0.77743 1.19071 1.20484 1.20560 1.21455 0.93976 0.90972 1.53446 0.91354 1.19348 0.88605 0.82474 0.97497 1.45769 1.11745 1.02109 1.68272 1.18958 0.92702 0.86215 0.87697 1.24359 0.93300 0.94514 0.98746 1.75339 1.19594 0.95407 1.09917 1.46625 1.03838 1.03672 1.66235 1.17741 1.01550 0.83389 0.98041 1.20976 0.97594 0.92446 0.95445 1.21316 0.97565 0.96253 1.00236 1.17314 0.95518 0.79629 0.95740 1.91563 1.86400 1.36238 1.96029 1.21086 1.04974 0.90738 1.02565 1.17412 0.97460 0.88021 0.86554 1.91535 1.89356 1.68878 1.61048 1.16510 0.81253 0.89761 0.78652 1.90947 1.54822 1.43899 1.54237 1.20687 0.86996 0.91793 1.34248 1.98287 1.09281 1.95190 1.97796 0.92010 0.95016 0.94824 0.75222 0.75710 0.83416 0.80102 0.80464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.34 13.29 21.45 0.28 -46.06 16 2 C 0.02 1.15 5.46 84.66 0.46 1.61 16 3 Si 0.96 38.68 29.54 68.60 2.03 40.71 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.56 -26.16 9.28 25.60 0.24 -25.92 16 8 H 0.07 3.11 7.60 -2.91 -0.02 3.09 16 9 C 0.24 9.85 4.66 85.63 0.40 10.25 16 10 N -0.66 -23.11 5.64 -342.69 -1.93 -25.05 16 11 C 0.27 8.86 6.67 38.80 0.26 9.12 16 12 C 0.09 2.77 10.59 85.59 0.91 3.68 16 13 N -0.19 -5.83 10.94 -56.45 -0.62 -6.45 16 14 N -0.39 -12.44 3.47 -312.09 -1.08 -13.53 16 15 C 0.08 2.34 5.45 38.19 0.21 2.54 16 16 C -0.04 -1.00 8.81 22.39 0.20 -0.80 16 17 C -0.13 -2.20 10.02 22.31 0.22 -1.98 16 18 C 0.14 2.34 7.30 22.39 0.16 2.51 16 19 F -0.12 -2.01 17.26 44.97 0.78 -1.24 16 20 C -0.17 -3.22 10.00 22.34 0.22 -3.00 16 21 C 0.13 3.19 7.24 22.49 0.16 3.35 16 22 F -0.13 -3.66 16.65 44.97 0.75 -2.91 16 23 C 0.54 19.19 7.27 84.72 0.62 19.81 16 24 O -0.56 -21.81 15.66 -5.87 -0.09 -21.90 16 25 C -0.29 -10.06 6.39 22.77 0.15 -9.91 16 26 Cl -0.03 -1.12 27.25 -2.72 -0.07 -1.20 16 27 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 28 H 0.03 1.35 7.95 -2.39 -0.02 1.33 16 29 H 0.03 1.42 7.95 -2.39 -0.02 1.40 16 30 H 0.41 14.19 7.02 -92.71 -0.65 13.54 16 31 H 0.23 5.78 6.77 -2.91 -0.02 5.76 16 32 H 0.15 3.31 7.84 -2.91 -0.02 3.29 16 33 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -56.87 329.72 4.79 -52.07 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.55 Total: 14.28 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 4.20 Total: 11.26 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -3.35 Total: -91.08 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.09 Total: -21.90 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 1.53 Total: -4.15 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.20 kcal Total: -56.87 4.79 -52.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362662297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.429 kcal (2) G-P(sol) polarization free energy of solvation -56.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds