Wall clock time and date at job start Tue Mar 31 2020 23:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38736 * 120.04891 * 0.02562 * 3 2 1 5 5 C 1.38203 * 119.93637 * 180.02562 * 4 3 2 6 6 Br 1.89105 * 119.98580 * 179.97438 * 5 4 3 7 7 C 1.38381 * 120.03304 * 0.02562 * 5 4 3 8 8 C 1.38228 * 120.10207 * 359.95743 * 7 5 4 9 9 C 1.38169 * 120.06610 * 359.76668 * 8 7 5 10 10 C 1.50693 * 120.02010 * 180.27771 * 9 8 7 11 11 C 1.52999 * 109.47395 * 265.25468 * 10 9 8 12 12 C 1.50699 * 109.47418 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99945 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00182 * 179.97438 * 12 11 10 15 15 C 1.46494 * 120.00120 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47173 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99602 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99729 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00505 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99602 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46905 * 90.00261 * 20 18 16 22 22 H 1.48502 * 109.47378 * 210.00059 * 20 18 16 23 23 H 1.48498 * 109.47108 * 330.00571 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 27 27 H 1.08001 * 120.03066 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.94911 * 179.97438 * 7 5 4 29 29 H 1.08001 * 119.96527 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47426 * 25.25175 * 10 9 8 31 31 H 1.09002 * 109.47605 * 145.25142 * 10 9 8 32 32 H 1.09009 * 109.46914 * 299.99980 * 11 10 9 33 33 H 1.08994 * 109.47309 * 59.99363 * 11 10 9 34 34 H 0.96998 * 119.99405 * 359.97438 * 14 12 11 35 35 H 1.09002 * 109.46942 * 299.99524 * 15 14 12 36 36 H 1.09007 * 109.47231 * 59.99649 * 15 14 12 37 37 H 0.96993 * 120.00013 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3751 0.0005 5 6 1.9214 3.6052 0.0000 6 35 0.8943 5.1930 0.0000 7 6 3.3035 3.6756 -0.0016 8 6 4.0567 2.5166 -0.0018 9 6 3.4313 1.2846 0.0045 10 6 4.2534 0.0217 0.0106 11 6 4.4314 -0.4780 -1.4245 12 6 5.2531 -1.7413 -1.4183 13 8 5.6571 -2.1968 -0.3694 14 7 5.5391 -2.3649 -2.5784 15 6 6.3383 -3.5926 -2.5725 16 6 6.5124 -4.0855 -3.9859 17 1 6.0714 -3.5391 -4.8065 18 6 7.2347 -5.2340 -4.2314 19 7 7.7713 -5.8996 -3.2321 20 14 7.4499 -5.8454 -5.9833 21 1 8.6757 -5.2463 -6.5696 22 1 7.5753 -7.3251 -5.9794 23 1 6.2698 -5.4507 -6.7938 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2129 2.3201 0.0005 28 1 3.7943 4.6377 -0.0024 29 1 5.1352 2.5741 -0.0026 30 1 5.2307 0.2265 0.4478 31 1 3.7442 -0.7406 0.6003 32 1 3.4541 -0.6828 -1.8617 33 1 4.9406 0.2842 -2.0141 34 1 5.2157 -2.0007 -3.4173 35 1 7.3158 -3.3876 -2.1358 36 1 5.8293 -4.3547 -1.9823 37 1 8.2791 -6.7078 -3.4048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427609408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:09 Heat of formation + Delta-G solvation = -64.943076 kcal Electronic energy + Delta-G solvation = -20563.073782 eV Core-core repulsion = 17158.358913 eV Total energy + Delta-G solvation = -3404.714869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62183 -38.76788 -37.76581 -34.51492 -33.98971 -32.30939 -31.52395 -30.55272 -29.29035 -27.65237 -27.02277 -24.42796 -22.61463 -22.36288 -21.14360 -19.53545 -18.11761 -17.11876 -16.75379 -16.09025 -15.99509 -15.39771 -15.10251 -14.99234 -14.69845 -14.23569 -14.10687 -13.45192 -13.39649 -13.05614 -12.67237 -12.23876 -12.15351 -12.04817 -11.87742 -11.70182 -11.58804 -11.06784 -10.94294 -10.89212 -10.76217 -10.69042 -10.63648 -10.30274 -9.38037 -9.15700 -8.96265 -8.71972 -8.39709 -7.84362 -6.15445 -4.22209 0.76425 1.05021 1.27413 2.99813 3.24715 3.28053 3.30892 3.33372 3.44194 4.12798 4.37540 4.43118 4.60165 4.74505 4.82909 4.88373 4.96894 5.19077 5.20516 5.24928 5.29502 5.33906 5.38427 5.61319 5.77745 5.82748 5.91819 6.00851 6.21821 6.37412 6.44521 7.06103 7.33492 7.48080 7.54358 7.68779 7.99037 8.66775 8.80228 9.14970 9.44602 10.94805 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.025112 B = 0.001997 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.729218 B =14014.776655 C =14137.933071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.137 3.863 4 C -0.182 4.182 5 C -0.058 4.058 6 Br -0.055 7.055 7 C -0.126 4.126 8 C -0.073 4.073 9 C -0.090 4.090 10 C -0.058 4.058 11 C -0.133 4.133 12 C 0.498 3.502 13 O -0.558 6.558 14 N -0.714 5.714 15 C 0.249 3.751 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.390 0.610 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.914 23.624 6.691 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.091 3.909 4 C -0.202 4.202 5 C -0.138 4.138 6 Br 0.031 6.969 7 C -0.146 4.146 8 C -0.092 4.092 9 C -0.091 4.091 10 C -0.096 4.096 11 C -0.173 4.173 12 C 0.283 3.717 13 O -0.438 6.438 14 N -0.362 5.362 15 C 0.128 3.872 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.223 0.777 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.811 23.489 7.474 29.836 hybrid contribution -0.110 -0.390 -1.398 1.455 sum -16.921 23.099 6.076 29.271 Atomic orbital electron populations 1.23134 0.78244 1.04453 1.01276 1.86192 1.21366 1.25812 1.88150 1.18784 0.91752 0.84110 0.96283 1.21107 1.00409 0.90736 1.07988 1.21458 0.94390 0.91271 1.06661 1.96714 1.71079 1.31437 1.97686 1.21012 0.91483 0.99500 1.02599 1.20995 1.00447 0.90297 0.97493 1.19578 0.90597 0.96532 1.02406 1.20205 0.99573 0.93158 0.96629 1.21611 1.01128 0.96481 0.98115 1.20474 0.81093 0.85579 0.84542 1.90653 1.54407 1.67372 1.31361 1.46476 1.53829 1.28420 1.07523 1.19092 0.90454 0.80332 0.97310 1.21239 1.34734 1.10061 0.92063 0.91928 1.24957 0.95147 0.96256 0.97710 1.69973 1.34028 1.17398 1.30922 0.86419 0.78583 0.78004 0.83924 1.20465 1.21011 1.19762 0.87788 0.92522 0.92616 0.84565 0.84862 0.84106 0.89972 0.89508 0.89310 0.89529 0.77737 0.95591 0.95594 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.42 9.63 -19.43 -0.19 -3.61 16 3 C 0.14 1.53 6.66 -39.22 -0.26 1.27 16 4 C -0.18 -1.77 8.78 -39.41 -0.35 -2.12 16 5 C -0.06 -0.56 6.22 -39.54 -0.25 -0.81 16 6 Br -0.05 -0.46 33.70 -68.01 -2.29 -2.76 16 7 C -0.13 -1.15 9.78 -39.53 -0.39 -1.54 16 8 C -0.07 -0.71 9.68 -39.61 -0.38 -1.10 16 9 C -0.09 -1.03 5.15 -104.47 -0.54 -1.57 16 10 C -0.06 -0.78 4.35 -27.89 -0.12 -0.90 16 11 C -0.13 -1.88 5.68 -27.88 -0.16 -2.04 16 12 C 0.50 9.91 7.83 -10.98 -0.09 9.82 16 13 O -0.56 -13.38 15.98 5.55 0.09 -13.29 16 14 N -0.71 -15.16 5.55 -61.47 -0.34 -15.50 16 15 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 16 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 20 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 27 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 28 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 31 H 0.09 1.31 7.65 -51.93 -0.40 0.92 16 32 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -32.72 341.45 -8.62 -41.34 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.77 Total: 2.93 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.98 Total: -4.66 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.40 Total: -40.99 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.10 Total: -16.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.72 -8.62 -41.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.600 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds