Wall clock time and date at job start Tue Mar 31 2020 23:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99969 * 2 1 4 4 H 1.48504 * 109.46836 * 269.99915 * 3 2 1 5 5 H 1.48499 * 109.47140 * 29.99830 * 3 2 1 6 6 H 1.48498 * 109.46948 * 149.99781 * 3 2 1 7 7 C 1.38729 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99367 * 180.02562 * 7 2 1 9 9 S 1.76193 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.76199 * 100.00043 * 185.11764 * 9 7 2 11 11 C 1.39222 * 120.02223 * 265.49096 * 10 9 7 12 12 C 1.38132 * 120.20489 * 180.02562 * 11 10 9 13 13 C 1.38082 * 120.24562 * 0.02562 * 12 11 10 14 14 C 1.39635 * 120.03440 * 0.02562 * 13 12 11 15 15 C 1.47861 * 120.09771 * 180.27640 * 14 13 12 16 16 O 1.21554 * 120.00291 * 179.72053 * 15 14 13 17 17 N 1.34775 * 120.00192 * 359.71686 * 15 14 13 18 18 C 1.46500 * 120.00370 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.63892 * 325.43314 * 18 17 15 20 20 C 1.53874 * 109.65242 * 205.00077 * 18 17 15 21 21 C 1.55040 * 106.62648 * 192.96575 * 20 18 17 22 22 S 1.83287 * 102.56576 * 42.43528 * 21 20 18 23 23 O 1.42103 * 109.35806 * 90.18711 * 22 21 20 24 24 O 1.42101 * 109.35587 * 223.38490 * 22 21 20 25 25 C 1.54170 * 109.64459 * 85.72379 * 18 17 15 26 26 C 1.38840 * 120.02186 * 85.50914 * 10 9 7 27 27 H 0.96999 * 120.00035 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.90020 * 0.04203 * 11 10 9 29 29 H 1.08003 * 119.88035 * 179.97438 * 12 11 10 30 30 H 1.08000 * 119.98178 * 179.97438 * 13 12 11 31 31 H 0.96997 * 120.00326 * 0.02562 * 17 15 14 32 32 H 1.09005 * 110.02371 * 312.26061 * 20 18 17 33 33 H 1.08997 * 110.02599 * 73.62397 * 20 18 17 34 34 H 1.09001 * 110.79101 * 160.70155 * 21 20 18 35 35 H 1.08996 * 110.79297 * 283.97528 * 21 20 18 36 36 H 1.08998 * 110.31900 * 266.66228 * 25 18 17 37 37 H 1.08996 * 110.31905 * 28.86519 * 25 18 17 38 38 H 1.07998 * 120.11821 * 359.95899 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0099 -1.2014 0.0005 8 1 3.0899 -1.2013 0.0010 9 16 1.1289 -2.7273 0.0005 10 6 2.4726 -3.8564 0.1561 11 6 3.0362 -4.4293 -0.9807 12 6 4.0894 -5.3153 -0.8631 13 6 4.5899 -5.6394 0.3823 14 6 4.0316 -5.0716 1.5293 15 6 4.5705 -5.4128 2.8632 16 8 4.0865 -4.9137 3.8603 17 7 5.5984 -6.2775 2.9738 18 6 6.1320 -6.6161 4.2954 19 1 6.0753 -5.7446 4.9477 20 6 7.5969 -7.0679 4.1619 21 6 7.9861 -7.7168 5.5151 22 16 6.5048 -8.7183 5.9178 23 8 6.6549 -10.0217 5.3719 24 8 6.1871 -8.5572 7.2934 25 6 5.3122 -7.7706 4.9052 26 6 2.9697 -4.1757 1.4125 27 1 -0.4850 0.8400 0.0004 28 1 2.6490 -4.1800 -1.9577 29 1 4.5224 -5.7570 -1.7485 30 1 5.4132 -6.3329 0.4693 31 1 5.9850 -6.6757 2.1782 32 1 7.6906 -7.7973 3.3573 33 1 8.2360 -6.2079 3.9619 34 1 8.8638 -8.3529 5.4009 35 1 8.1591 -6.9541 6.2744 36 1 4.5123 -7.3769 5.5322 37 1 4.9009 -8.4005 4.1164 38 1 2.5347 -3.7326 2.2961 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429940921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:01 Heat of formation + Delta-G solvation = -110.322122 kcal Electronic energy + Delta-G solvation = -23897.463529 eV Core-core repulsion = 20150.005140 eV Total energy + Delta-G solvation = -3747.458388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37033 -39.37394 -38.14054 -37.76983 -37.06233 -34.66275 -34.30780 -32.15000 -31.86416 -30.33139 -27.75554 -26.46837 -24.68804 -23.67441 -22.33911 -21.71325 -20.05662 -19.80223 -19.04671 -18.05013 -17.74549 -17.19673 -16.94312 -16.86417 -16.68119 -16.40871 -16.04588 -15.71633 -15.28276 -15.09806 -14.87954 -14.76176 -14.59915 -13.87005 -13.60558 -13.37219 -13.26667 -13.25593 -13.15915 -13.08723 -13.01729 -12.97120 -12.66816 -12.39681 -12.20231 -11.86151 -11.75493 -11.37708 -11.26254 -11.13471 -10.75399 -10.38560 -9.92518 -9.70114 -8.81959 -8.40130 -6.20466 -0.95527 -0.19236 0.25829 1.28940 1.37024 1.45608 1.51985 1.65605 1.76020 2.00288 2.23694 2.63464 2.80306 2.93051 3.05907 3.33842 3.40976 3.54459 3.56810 3.75054 3.91863 3.94762 4.04560 4.05740 4.35622 4.47260 4.53352 4.63909 4.69589 4.81589 4.91710 4.92906 5.00963 5.20987 5.26286 5.33196 5.37636 5.51511 5.86787 6.14700 6.41119 7.00196 7.09466 8.66977 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.002310 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.708850 B =12116.508874 C =12580.977336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.018 3.982 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.068 0.932 9 S -0.101 6.101 10 C -0.129 4.129 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.060 4.060 14 C -0.159 4.159 15 C 0.566 3.434 16 O -0.576 6.576 17 N -0.697 5.697 18 C 0.145 3.855 19 H 0.099 0.901 20 C -0.124 4.124 21 C -0.554 4.554 22 S 2.401 3.599 23 O -0.969 6.969 24 O -0.985 6.985 25 C -0.613 4.613 26 C -0.046 4.046 27 H 0.274 0.726 28 H 0.133 0.867 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.423 0.577 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.173 0.827 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.965 -17.744 3.456 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.681 4.681 8 H 0.086 0.914 9 S 0.134 5.866 10 C -0.241 4.241 11 C -0.085 4.085 12 C -0.141 4.141 13 C -0.079 4.079 14 C -0.164 4.164 15 C 0.354 3.646 16 O -0.456 6.456 17 N -0.351 5.351 18 C 0.038 3.962 19 H 0.118 0.882 20 C -0.163 4.163 21 C -0.687 4.687 22 S 2.587 3.413 23 O -0.966 6.966 24 O -0.982 6.982 25 C -0.743 4.743 26 C -0.068 4.068 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.194 0.806 30 H 0.198 0.802 31 H 0.263 0.737 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.190 0.810 35 H 0.177 0.823 36 H 0.148 0.852 37 H 0.169 0.831 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.130 -18.284 4.678 27.593 hybrid contribution 0.763 1.973 -0.352 2.144 sum 20.893 -16.311 4.326 26.857 Atomic orbital electron populations 1.70112 1.07572 1.28805 1.47872 1.26030 0.96057 1.02958 0.93644 0.85033 0.78048 0.76358 0.79096 1.18662 1.19855 1.19155 1.23051 0.94621 0.91518 1.58953 0.91357 1.83534 1.08893 0.98786 1.95374 1.22488 1.02984 1.02803 0.95787 1.22085 0.94559 0.94256 0.97555 1.21575 0.95758 0.97444 0.99278 1.21776 0.98584 0.97207 0.90305 1.19944 0.99735 1.02586 0.94095 1.18373 0.79757 0.78269 0.88177 1.90779 1.60566 1.54435 1.39785 1.45587 1.34133 1.45494 1.09877 1.21522 0.92372 0.96820 0.85446 0.88243 1.22569 0.92065 1.05191 0.96465 1.30438 1.17166 1.14588 1.06519 1.08587 0.80864 0.76903 0.74913 1.93583 1.85848 1.36679 1.80538 1.93568 1.83984 1.87754 1.32926 1.31041 1.15390 1.11902 1.15968 1.21637 0.94278 0.94394 0.96498 0.91717 0.84938 0.80638 0.80174 0.73719 0.85846 0.85247 0.80950 0.82314 0.85247 0.83069 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.60 13.22 21.64 0.29 -54.31 16 2 C 0.02 1.04 5.49 84.84 0.47 1.51 16 3 Si 0.99 44.12 29.55 68.60 2.03 46.14 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.53 -31.02 9.46 67.94 0.64 -30.38 16 8 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 9 S -0.10 -5.45 21.41 -56.49 -1.21 -6.66 16 10 C -0.13 -5.53 5.45 22.65 0.12 -5.41 16 11 C -0.06 -2.09 9.79 22.48 0.22 -1.87 16 12 C -0.12 -2.60 10.02 22.21 0.22 -2.38 16 13 C -0.06 -1.15 9.54 22.57 0.22 -0.94 16 14 C -0.16 -4.62 5.87 -20.11 -0.12 -4.74 16 15 C 0.57 15.19 7.75 86.79 0.67 15.87 16 16 O -0.58 -21.14 16.00 -3.88 -0.06 -21.20 16 17 N -0.70 -9.71 5.00 -442.11 -2.21 -11.92 16 18 C 0.14 1.61 2.88 45.68 0.13 1.74 16 19 H 0.10 1.44 7.57 -2.39 -0.02 1.42 16 20 C -0.12 -0.21 5.98 31.59 0.19 -0.02 16 21 C -0.55 -1.14 7.31 72.68 0.53 -0.61 16 22 S 2.40 28.81 6.11 -56.49 -0.34 28.46 16 23 O -0.97 -17.90 18.15 -127.49 -2.31 -20.21 16 24 O -0.99 -21.50 18.15 -127.49 -2.31 -23.81 16 25 C -0.61 -7.72 6.91 72.38 0.50 -7.22 16 26 C -0.05 -1.87 9.34 22.70 0.21 -1.66 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.18 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.18 1.20 6.40 -2.91 -0.02 1.18 16 31 H 0.42 2.27 6.62 -92.71 -0.61 1.65 16 32 H 0.12 -0.39 8.12 -2.38 -0.02 -0.41 16 33 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.17 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.16 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.15 1.60 8.07 -2.39 -0.02 1.58 16 38 H 0.10 4.74 7.65 -2.91 -0.02 4.72 16 Total: -1.00 -93.78 353.92 -1.64 -95.42 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.49 Total: 4.19 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 4.01 Total: -36.10 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.93 Total: -66.23 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -4.69 Total: -65.22 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 23.36 SS G_CDS: -1.55 Total: 21.81 kcal Total: -93.78 -1.64 -95.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429940921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.901 kcal (2) G-P(sol) polarization free energy of solvation -93.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds