Wall clock time and date at job start Tue Mar 31 2020 23:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00111 * 2 1 4 4 C 1.53000 * 109.47031 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47158 * 65.00202 * 4 3 2 6 6 C 1.37096 * 120.00300 * 270.00082 * 5 4 3 7 7 H 1.07991 * 120.00136 * 139.66086 * 6 5 4 8 8 C 1.38952 * 119.99623 * 319.66656 * 6 5 4 9 9 N 1.31409 * 120.00100 * 159.03514 * 8 6 5 10 10 Si 1.86799 * 120.00029 * 339.02484 * 8 6 5 11 11 H 1.48497 * 109.47116 * 94.72124 * 10 8 6 12 12 H 1.48506 * 109.47288 * 214.72238 * 10 8 6 13 13 H 1.48497 * 109.47137 * 334.71983 * 10 8 6 14 14 C 1.34780 * 119.99982 * 89.99695 * 5 4 3 15 15 O 1.21296 * 119.99738 * 4.84460 * 14 5 4 16 16 C 1.50697 * 120.00174 * 184.84355 * 14 5 4 17 17 C 1.50699 * 109.47329 * 175.77383 * 16 14 5 18 18 C 1.38235 * 120.00476 * 99.88872 * 17 16 14 19 19 C 1.38219 * 120.01341 * 179.97438 * 18 17 16 20 20 C 1.38267 * 120.01745 * 0.02707 * 19 18 17 21 21 C 1.38201 * 120.00921 * 359.97438 * 20 19 18 22 22 C 1.38305 * 120.00619 * 279.61569 * 17 16 14 23 23 Br 1.89104 * 120.00632 * 0.02666 * 22 17 16 24 24 H 1.09001 * 109.47231 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46725 * 299.99718 * 1 2 3 26 26 H 1.08999 * 109.47424 * 59.99681 * 1 2 3 27 27 H 1.09001 * 109.47053 * 60.00642 * 3 2 1 28 28 H 1.08997 * 109.47662 * 300.00237 * 3 2 1 29 29 H 1.08997 * 109.47518 * 305.00402 * 4 3 2 30 30 H 1.09005 * 109.47454 * 184.99876 * 4 3 2 31 31 H 0.96997 * 120.00570 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47313 * 295.77703 * 16 14 5 33 33 H 1.09003 * 109.47027 * 55.77565 * 16 14 5 34 34 H 1.08001 * 119.99320 * 0.02562 * 18 17 16 35 35 H 1.07996 * 119.99580 * 180.02562 * 19 18 17 36 36 H 1.07996 * 119.99487 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.00370 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7992 -1.3347 7 1 3.7816 -1.3155 -2.2289 8 6 4.6278 -1.5163 -0.2690 9 7 4.3796 -2.8016 -0.1537 10 14 5.6932 -0.6533 0.9998 11 1 4.8527 -0.2366 2.1509 12 1 6.7524 -1.5816 1.4706 13 1 6.3215 0.5442 0.3864 14 6 4.2633 1.3328 -2.3200 15 8 4.2412 2.5416 -2.2211 16 6 4.6114 0.6910 -3.6383 17 6 4.7853 1.7593 -4.6869 18 6 6.0534 2.1797 -5.0417 19 6 6.2131 3.1592 -6.0038 20 6 5.1046 3.7193 -6.6113 21 6 3.8363 3.2997 -6.2571 22 6 3.6763 2.3153 -5.2983 23 35 1.9415 1.7357 -4.8182 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8508 0.5684 0.8426 30 1 3.9786 2.1764 0.0902 31 1 4.7491 -3.3021 0.5904 32 1 5.5395 0.1288 -3.5350 33 1 3.8092 0.0161 -3.9368 34 1 6.9196 1.7421 -4.5678 35 1 7.2040 3.4871 -6.2811 36 1 5.2298 4.4849 -7.3627 37 1 2.9705 3.7370 -6.7320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457179949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:02 Heat of formation + Delta-G solvation = -55.057271 kcal Electronic energy + Delta-G solvation = -22218.149311 eV Core-core repulsion = 18813.863123 eV Total energy + Delta-G solvation = -3404.286188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05670 -39.87847 -38.55484 -36.60591 -34.06703 -33.86283 -33.00808 -31.25239 -30.22113 -28.38330 -27.23665 -26.43997 -24.17237 -23.38191 -22.38276 -20.78821 -18.86955 -18.15680 -17.62395 -17.38078 -16.99708 -16.73494 -16.30791 -16.04137 -15.86656 -15.51741 -15.27144 -14.52702 -14.42556 -14.32078 -14.00624 -13.73667 -13.51949 -13.24332 -13.10406 -12.77126 -12.58768 -12.44987 -12.18861 -12.00364 -11.93197 -11.76357 -11.69716 -11.06079 -11.03978 -10.60151 -10.42808 -9.77341 -9.64853 -9.51897 -8.40023 -6.00905 0.21414 0.38357 0.76812 1.22130 1.33127 1.43578 1.93638 2.25256 2.52824 2.82402 2.93018 3.19913 3.77177 3.88394 4.06768 4.14210 4.15940 4.32342 4.36698 4.38943 4.46986 4.51695 4.53593 4.63439 4.67294 4.68621 4.78757 4.82290 4.90876 5.05403 5.31992 5.47428 5.51185 5.54388 5.96035 6.16308 6.30654 6.40127 7.06427 7.49022 7.83668 8.74647 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.005596 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.913697 B = 5002.616427 C = 6179.214570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.062 3.938 4 C 0.093 3.907 5 N -0.466 5.466 6 C -0.320 4.320 7 H 0.075 0.925 8 C 0.038 3.962 9 N -0.896 5.896 10 Si 0.919 3.081 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.493 3.507 15 O -0.607 6.607 16 C -0.089 4.089 17 C -0.049 4.049 18 C -0.120 4.120 19 C -0.100 4.100 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.096 4.096 23 Br -0.067 7.067 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.275 0.725 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 10.838 -9.786 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.030 4.030 5 N -0.187 5.187 6 C -0.448 4.448 7 H 0.093 0.907 8 C -0.166 4.166 9 N -0.533 5.533 10 Si 0.746 3.254 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.284 3.716 15 O -0.492 6.492 16 C -0.129 4.129 17 C -0.052 4.052 18 C -0.139 4.139 19 C -0.118 4.118 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.175 4.175 23 Br 0.019 6.981 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.326 10.844 -9.430 14.558 hybrid contribution 0.357 -0.061 0.888 0.959 sum -1.969 10.783 -8.542 13.896 Atomic orbital electron populations 1.22835 0.80765 1.03022 1.00196 1.88165 1.20323 1.27422 1.95290 1.22788 0.93482 0.85088 1.00253 1.21823 0.93967 0.98794 0.88375 1.43641 1.58621 1.06371 1.10092 1.18682 1.41599 0.79874 1.04614 0.90704 1.25718 0.96754 0.95421 0.98729 1.69839 1.42202 1.09303 1.31930 0.86254 0.79679 0.79136 0.80358 1.19103 1.21140 1.19036 1.20475 0.78351 0.86309 0.86508 1.90525 1.57862 1.14995 1.85846 1.20508 1.04685 0.96817 0.90860 1.19521 0.93563 0.96762 0.95333 1.21292 0.95622 0.98462 0.98510 1.21607 1.00788 0.94732 0.94707 1.21524 0.90935 1.00417 1.00599 1.21341 0.99854 0.94973 0.95806 1.21845 0.90150 1.02840 1.02656 1.96641 1.18700 1.89595 1.93179 0.89533 0.92593 0.94414 0.90795 0.94217 0.91713 0.89199 0.91516 0.87836 0.88954 0.84606 0.82182 0.81712 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 11.01 113.37 1.25 2.15 16 2 O -0.39 -17.02 10.18 -148.98 -1.52 -18.54 16 3 C 0.06 2.44 6.28 71.98 0.45 2.90 16 4 C 0.09 4.15 4.67 86.38 0.40 4.56 16 5 N -0.47 -22.60 2.10 -635.53 -1.34 -23.94 16 6 C -0.32 -16.97 8.57 84.04 0.72 -16.25 16 7 H 0.08 4.28 7.21 -2.92 -0.02 4.26 16 8 C 0.04 2.03 5.31 84.93 0.45 2.48 16 9 N -0.90 -50.73 13.96 21.66 0.30 -50.43 16 10 Si 0.92 42.51 25.11 68.60 1.72 44.23 16 11 H -0.26 -11.72 6.67 99.48 0.66 -11.05 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.49 22.76 7.26 87.66 0.64 23.40 16 15 O -0.61 -29.48 15.57 -3.08 -0.05 -29.53 16 16 C -0.09 -3.60 3.97 29.10 0.12 -3.48 16 17 C -0.05 -1.74 4.40 -19.85 -0.09 -1.82 16 18 C -0.12 -3.48 9.67 22.26 0.22 -3.27 16 19 C -0.10 -2.21 10.05 22.27 0.22 -1.99 16 20 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 21 C -0.10 -2.59 9.79 22.29 0.22 -2.37 16 22 C -0.10 -3.15 6.18 22.31 0.14 -3.01 16 23 Br -0.07 -2.28 31.70 -20.37 -0.65 -2.92 16 24 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 2.98 3.52 -2.39 -0.01 2.97 16 30 H 0.09 3.81 7.36 -2.38 -0.02 3.80 16 31 H 0.28 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.10 4.03 7.99 -2.39 -0.02 4.01 16 33 H 0.09 3.86 6.60 -2.39 -0.02 3.84 16 34 H 0.14 3.60 8.04 -2.91 -0.02 3.57 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -66.37 330.61 4.47 -61.90 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.03 Total: 18.14 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 4.96 Total: 1.10 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.03 Total: -74.37 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.56 Total: -48.07 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.72 Total: 44.23 kcal Atomic # 35 Polarization: -2.28 SS G_CDS: -0.65 Total: -2.92 kcal Total: -66.37 4.47 -61.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.841 kcal (2) G-P(sol) polarization free energy of solvation -66.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds