Wall clock time and date at job start Tue Mar 31 2020 23:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46979 * 315.97352 * 3 2 1 5 5 C 1.36934 * 120.00350 * 270.93218 * 4 3 2 6 6 H 1.07999 * 119.99937 * 181.56997 * 5 4 3 7 7 C 1.38807 * 119.99779 * 1.56780 * 5 4 3 8 8 N 1.31624 * 120.00284 * 29.80191 * 7 5 4 9 9 Si 1.86801 * 119.99980 * 209.80482 * 7 5 4 10 10 H 1.48500 * 109.47537 * 94.99227 * 9 7 5 11 11 H 1.48505 * 109.47007 * 214.99042 * 9 7 5 12 12 H 1.48496 * 109.47194 * 334.98656 * 9 7 5 13 13 S 1.65608 * 119.99748 * 91.20694 * 4 3 2 14 14 O 1.42108 * 106.39984 * 23.26588 * 13 4 3 15 15 O 1.42101 * 106.40060 * 156.18137 * 13 4 3 16 16 C 1.76194 * 107.22002 * 269.72603 * 13 4 3 17 17 C 1.37836 * 119.94319 * 114.99943 * 16 13 4 18 18 C 1.39684 * 119.88020 * 179.97438 * 17 16 13 19 19 C 1.47599 * 120.12596 * 179.97438 * 18 17 16 20 20 O 1.21487 * 119.99761 * 174.04469 * 19 18 17 21 21 O 1.34729 * 119.99597 * 354.04574 * 19 18 17 22 22 C 1.39727 * 119.75021 * 0.02562 * 18 17 16 23 23 C 1.50703 * 120.06185 * 179.97438 * 22 18 17 24 24 C 1.37800 * 119.87458 * 359.97438 * 22 18 17 25 25 C 1.38653 * 119.93304 * 294.72341 * 16 13 4 26 26 F 1.35097 * 119.87750 * 0.02562 * 25 16 13 27 27 H 4.40644 * 5.51324 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46902 * 195.97465 * 3 2 1 29 29 H 1.08999 * 109.47233 * 75.97168 * 3 2 1 30 30 H 0.96995 * 120.00417 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.05517 * 359.95560 * 17 16 13 32 32 H 0.96700 * 116.99622 * 179.97438 * 21 19 18 33 33 H 1.09001 * 109.47425 * 83.39151 * 23 22 18 34 34 H 1.09006 * 109.46649 * 203.39120 * 23 22 18 35 35 H 1.09001 * 109.46998 * 323.38891 * 23 22 18 36 36 H 1.08001 * 119.93337 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9923 0.9600 5 6 3.3447 -0.6370 2.2656 6 1 3.7290 -1.3622 2.9675 7 6 3.0635 0.6554 2.6870 8 7 2.1102 1.3466 2.0988 9 14 4.0380 1.4136 4.0887 10 1 5.1578 2.2169 3.5355 11 1 3.1489 2.2911 4.8918 12 1 4.5818 0.3357 4.9534 13 16 3.4399 -2.5428 0.4645 14 8 3.6722 -2.4780 -0.9360 15 8 4.3805 -3.0801 1.3842 16 6 1.9521 -3.4616 0.6802 17 6 1.2939 -3.9728 -0.4177 18 6 0.1148 -4.7016 -0.2451 19 6 -0.5947 -5.2510 -1.4170 20 8 -1.5580 -5.9743 -1.2597 21 8 -0.1740 -4.9502 -2.6611 22 6 -0.3910 -4.9076 1.0410 23 6 -1.6629 -5.6922 1.2352 24 6 0.2753 -4.3919 2.1314 25 6 1.4487 -3.6740 1.9545 26 9 2.1006 -3.1750 3.0274 27 1 -1.0498 0.0000 0.0003 28 1 3.0089 0.9888 0.2828 29 1 3.0095 -0.2483 -0.9970 30 1 1.9139 2.2498 2.3930 31 1 1.6891 -3.8099 -1.4095 32 1 -0.6703 -5.3339 -3.3970 33 1 -1.4351 -6.7582 1.2406 34 1 -2.1203 -5.4136 2.1846 35 1 -2.3534 -5.4724 0.4209 36 1 -0.1146 -4.5509 3.1259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490921841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:21 Heat of formation + Delta-G solvation = -102.549239 kcal Electronic energy + Delta-G solvation = -28394.221227 eV Core-core repulsion = 24080.886720 eV Total energy + Delta-G solvation = -4313.334507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.64331 -40.47623 -38.36908 -36.45540 -36.15694 -35.85838 -34.47634 -32.60467 -32.26851 -31.25986 -30.89149 -27.41657 -26.74971 -24.19636 -23.88009 -22.38412 -21.20588 -18.73570 -18.32722 -18.08303 -17.58919 -16.93540 -16.73364 -16.56583 -16.09451 -15.70289 -15.22142 -15.13819 -14.71821 -14.42781 -13.98755 -13.53518 -13.48818 -13.41350 -13.37491 -13.25871 -12.64567 -12.50659 -12.18084 -12.02497 -11.71486 -11.54242 -11.46978 -11.32585 -11.05184 -10.83544 -10.79428 -10.52759 -10.36442 -10.31797 -10.00111 -9.70557 -9.41420 -9.06783 -8.89308 -8.66402 -8.44544 -6.83435 -4.03900 0.67049 1.15070 1.56638 2.47074 3.01558 3.03259 3.09413 3.15542 3.54426 3.68860 3.89508 3.99852 4.33732 4.40025 4.51733 4.69469 4.82098 4.98636 5.13151 5.39153 5.43272 5.52637 5.59433 5.68223 5.77570 5.92186 6.05018 6.11404 6.19188 6.30739 6.39102 6.52813 6.64553 6.86437 6.91918 7.02647 7.12192 7.89390 8.01965 8.38756 8.72412 8.82324 10.10601 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.004720 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.566397 B = 5930.885748 C = 6109.543189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.123 4.123 3 C 0.222 3.778 4 N -0.780 5.780 5 C -0.220 4.220 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.804 5.804 9 Si 0.934 3.066 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.259 1.259 13 S 2.497 3.503 14 O -0.994 6.994 15 O -0.975 6.975 16 C -0.715 4.715 17 C 0.056 3.944 18 C -0.180 4.180 19 C 0.534 3.466 20 O -0.518 6.518 21 O -0.508 6.508 22 C 0.035 3.965 23 C -0.124 4.124 24 C -0.197 4.197 25 C 0.239 3.761 26 F -0.107 7.107 27 H 0.198 0.802 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.280 0.720 31 H 0.155 0.845 32 H 0.412 0.588 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -4.670 -2.295 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.125 4.125 3 C 0.097 3.903 4 N -0.600 5.600 5 C -0.371 4.371 6 H 0.148 0.852 7 C -0.188 4.188 8 N -0.443 5.443 9 Si 0.759 3.241 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.183 1.183 13 S 2.594 3.406 14 O -0.983 6.983 15 O -0.964 6.964 16 C -0.789 4.789 17 C 0.037 3.963 18 C -0.182 4.182 19 C 0.381 3.619 20 O -0.410 6.410 21 O -0.320 6.320 22 C 0.034 3.966 23 C -0.180 4.180 24 C -0.216 4.216 25 C 0.218 3.782 26 F -0.085 7.085 27 H 0.215 0.785 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.173 0.827 32 H 0.270 0.730 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.892 -5.178 -2.434 7.528 hybrid contribution -1.237 0.058 0.615 1.383 sum -6.129 -5.120 -1.819 8.191 Atomic orbital electron populations 1.24287 0.95385 1.03419 1.04806 1.23561 0.94705 0.97791 0.96440 1.18839 0.83695 0.95798 0.92004 1.56266 1.68739 1.18971 1.16063 1.20533 1.31156 0.96692 0.88745 0.85174 1.25707 0.95933 0.97777 0.99337 1.70306 1.22728 1.12061 1.39181 0.85750 0.79406 0.79400 0.79590 1.19439 1.20548 1.18309 1.14021 0.78883 0.73668 0.74058 1.93323 1.86255 1.86327 1.32432 1.93370 1.61083 1.78739 1.63232 1.32732 1.31151 1.18921 0.96098 1.21073 0.89853 0.86557 0.98817 1.18952 0.99624 1.08965 0.90665 1.20750 0.81085 0.77149 0.82936 1.90809 1.27522 1.36190 1.86457 1.84632 1.59828 1.71074 1.16418 1.19826 0.94673 0.91633 0.90471 1.21181 0.94001 0.99502 1.03336 1.20975 0.96557 1.04143 0.99960 1.17357 0.88980 0.89201 0.82673 1.91640 1.79690 1.83892 1.53301 0.78520 0.85782 0.89697 0.90920 0.82731 0.73019 0.90088 0.91640 0.88577 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.22 19.25 29.55 0.57 -4.65 16 2 C -0.12 -2.65 11.84 -37.12 -0.44 -3.09 16 3 C 0.22 4.77 5.41 -6.82 -0.04 4.73 16 4 N -0.78 -17.93 2.88 -62.77 -0.18 -18.11 16 5 C -0.22 -5.14 8.51 -15.06 -0.13 -5.27 16 6 H 0.13 3.09 6.61 -52.49 -0.35 2.74 16 7 C 0.03 0.59 4.88 -17.43 -0.09 0.51 16 8 N -0.80 -18.02 9.34 55.49 0.52 -17.50 16 9 Si 0.93 17.50 29.65 -169.99 -5.04 12.46 16 10 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 13 S 2.50 57.84 5.30 -107.50 -0.57 57.27 16 14 O -0.99 -23.64 15.54 -57.17 -0.89 -24.52 16 15 O -0.97 -24.78 16.21 -57.17 -0.93 -25.71 16 16 C -0.71 -14.96 5.91 -39.58 -0.23 -15.19 16 17 C 0.06 1.06 9.11 -39.19 -0.36 0.70 16 18 C -0.18 -3.04 5.87 -104.98 -0.62 -3.66 16 19 C 0.53 7.98 8.20 34.55 0.28 8.26 16 20 O -0.52 -8.01 14.12 -19.26 -0.27 -8.28 16 21 O -0.51 -6.24 12.69 -40.57 -0.51 -6.76 16 22 C 0.03 0.55 5.91 -104.22 -0.62 -0.07 16 23 C -0.12 -1.59 8.73 36.01 0.31 -1.27 16 24 C -0.20 -3.27 9.64 -39.57 -0.38 -3.65 16 25 C 0.24 4.77 7.22 -39.26 -0.28 4.49 16 26 F -0.11 -2.27 14.57 2.25 0.03 -2.24 16 27 H 0.20 3.27 7.80 -54.10 -0.42 2.85 16 28 H 0.12 2.66 6.03 -51.93 -0.31 2.35 16 29 H 0.09 1.71 6.99 -51.93 -0.36 1.35 16 30 H 0.28 5.87 8.31 -40.82 -0.34 5.53 16 31 H 0.16 2.83 6.89 -52.49 -0.36 2.47 16 32 H 0.41 2.80 9.11 45.56 0.42 3.21 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.10 1.30 5.85 -51.93 -0.30 1.00 16 36 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -29.60 333.92 -6.91 -36.52 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -2.09 Total: 9.98 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.01 Total: -18.15 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.34 Total: -35.61 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -2.60 Total: -65.27 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.03 Total: -2.24 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.04 Total: 12.46 kcal Atomic # 16 Polarization: 57.84 SS G_CDS: -0.57 Total: 57.27 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.60 -6.91 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490921841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.033 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds