Wall clock time and date at job start Tue Mar 31 2020 23:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35618 * 124.93510 * 2 1 4 4 C 1.35438 * 107.13640 * 180.02562 * 3 2 1 5 5 Br 1.89104 * 127.23640 * 179.74454 * 4 3 2 6 6 C 1.41533 * 105.52897 * 0.02562 * 4 3 2 7 7 C 1.47674 * 126.46745 * 180.02562 * 6 4 3 8 8 O 1.21575 * 119.99812 * 6.33906 * 7 6 4 9 9 N 1.34779 * 120.00142 * 186.34169 * 7 6 4 10 10 C 1.46926 * 120.63134 * 6.71701 * 9 7 6 11 11 C 1.53621 * 108.54168 * 126.36644 * 10 9 7 12 12 C 1.53042 * 109.23734 * 54.86305 * 11 10 9 13 13 C 1.50705 * 109.44687 * 178.49481 * 12 11 10 14 14 H 1.08002 * 120.00198 * 120.05925 * 13 12 11 15 15 C 1.37872 * 120.00132 * 300.05570 * 13 12 11 16 16 N 1.31509 * 120.00062 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99731 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47331 * 90.00000 * 17 15 13 19 19 H 1.48510 * 109.46972 * 209.99684 * 17 15 13 20 20 H 1.48495 * 109.47502 * 329.99419 * 17 15 13 21 21 C 1.53037 * 109.53782 * 298.50663 * 12 11 10 22 22 C 1.46924 * 120.62756 * 187.00321 * 9 7 6 23 23 N 1.28470 * 124.93469 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47019 * 89.99167 * 1 2 3 25 25 H 1.08996 * 109.46963 * 209.99562 * 1 2 3 26 26 H 1.09003 * 109.46710 * 329.99830 * 1 2 3 27 27 H 1.08001 * 126.43387 * 0.03251 * 3 2 1 28 28 H 1.09000 * 109.59086 * 246.20679 * 10 9 7 29 29 H 1.09007 * 109.58403 * 6.62801 * 10 9 7 30 30 H 1.08996 * 109.63883 * 294.87175 * 11 10 9 31 31 H 1.09000 * 109.43027 * 174.72535 * 11 10 9 32 32 H 1.08997 * 109.46423 * 58.52767 * 12 11 10 33 33 H 0.97006 * 120.00023 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.49744 * 301.41674 * 21 12 11 35 35 H 1.08997 * 109.50249 * 181.32122 * 21 12 11 36 36 H 1.08995 * 109.59199 * 353.37046 * 22 9 7 37 37 H 1.09001 * 109.58609 * 113.66039 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1118 0.0000 4 6 3.5312 0.6978 -0.0006 5 35 5.0809 1.7815 -0.0076 6 6 3.4751 -0.7164 -0.0015 7 6 4.6270 -1.6405 -0.0019 8 8 5.7560 -1.2047 0.1149 9 7 4.4268 -2.9670 -0.1317 10 6 3.0873 -3.4972 -0.4203 11 6 3.1752 -4.3968 -1.6625 12 6 4.2400 -5.4717 -1.4323 13 6 4.3043 -6.3795 -2.6335 14 1 5.2243 -6.4726 -3.1915 15 6 3.1886 -7.0914 -3.0201 16 7 3.2446 -7.8833 -4.0686 17 14 1.5972 -6.9300 -2.0554 18 1 0.7835 -5.8255 -2.6238 19 1 0.8348 -8.2016 -2.1418 20 1 1.9079 -6.6349 -0.6336 21 6 5.6020 -4.8062 -1.2228 22 6 5.5428 -3.9107 0.0188 23 7 2.2007 -1.0532 -0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 1.8966 2.1352 0.0005 28 1 2.7331 -4.0785 0.4310 29 1 2.4014 -2.6721 -0.6127 30 1 3.4459 -3.7966 -2.5311 31 1 2.2096 -4.8723 -1.8348 32 1 3.9815 -6.0557 -0.5491 33 1 2.4595 -8.3839 -4.3408 34 1 5.8499 -4.2021 -2.0955 35 1 6.3639 -5.5729 -1.0823 36 1 6.4776 -3.3587 0.1162 37 1 5.3860 -4.5234 0.9065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570113223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:15 Heat of formation + Delta-G solvation = 68.218329 kcal Electronic energy + Delta-G solvation = -22148.799536 eV Core-core repulsion = 18782.151730 eV Total energy + Delta-G solvation = -3366.647806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.92283 -39.51473 -36.95714 -33.97359 -33.50315 -32.16321 -31.32766 -30.51736 -29.66394 -27.78437 -26.30507 -23.63378 -22.66730 -21.88686 -21.51415 -20.01034 -18.75306 -17.31358 -16.85275 -16.62352 -16.50888 -15.51169 -14.84561 -14.55101 -14.15423 -13.97490 -13.51551 -13.35278 -13.29228 -13.08468 -12.87948 -12.64414 -12.46065 -12.12817 -11.83717 -11.25795 -11.13604 -10.88554 -10.63790 -10.38050 -10.14029 -9.99049 -9.70079 -9.53893 -9.43812 -9.21195 -9.00761 -8.90374 -8.53059 -8.09028 -6.06911 -4.05500 1.40205 1.47174 1.65230 2.31405 3.22677 3.27942 3.34696 3.38566 3.48963 4.12104 4.36233 4.39708 4.59711 4.69455 4.96061 5.01564 5.11158 5.23730 5.49198 5.71389 5.74026 5.82456 5.91061 6.00226 6.11445 6.25263 6.36928 6.56192 6.71053 6.71877 6.83494 7.00362 7.25073 7.53797 7.54172 7.76607 7.79760 8.42373 8.53482 8.97916 9.55524 11.06588 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.003892 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.376343 B = 7193.225620 C = 8314.969261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.287 5.287 3 C 0.021 3.979 4 C -0.160 4.160 5 Br 0.010 6.990 6 C 0.025 3.975 7 C 0.591 3.409 8 O -0.525 6.525 9 N -0.586 5.586 10 C 0.082 3.918 11 C -0.132 4.132 12 C 0.013 3.987 13 C -0.511 4.511 14 H 0.074 0.926 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.264 1.264 21 C -0.112 4.112 22 C 0.110 3.890 23 N -0.245 5.245 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.191 0.809 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.044 22.045 10.919 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.125 4.125 4 C -0.250 4.250 5 Br 0.094 6.906 6 C -0.137 4.137 7 C 0.376 3.624 8 O -0.400 6.400 9 N -0.318 5.318 10 C -0.041 4.041 11 C -0.170 4.170 12 C -0.006 4.006 13 C -0.549 4.549 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.226 1.226 20 H -0.189 1.189 21 C -0.151 4.151 22 C -0.012 4.012 23 N -0.080 5.080 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.208 0.792 28 H 0.078 0.922 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.833 21.602 10.872 24.877 hybrid contribution -1.126 0.369 0.257 1.213 sum -6.959 21.971 11.129 25.594 Atomic orbital electron populations 1.22278 0.72464 1.05778 1.04986 1.45804 1.08096 1.02982 1.50445 1.22793 0.89277 0.94163 1.06306 1.21926 0.93379 0.93752 1.15971 1.96668 1.32444 1.63609 1.97870 1.21990 0.91257 0.92475 1.08010 1.16883 0.86290 0.81420 0.77765 1.90808 1.22048 1.76323 1.50818 1.47965 1.10982 1.04782 1.68117 1.22674 0.83080 0.99697 0.98604 1.22421 1.00642 0.97914 0.96018 1.19157 0.90760 0.92821 0.97863 1.21072 0.99068 1.23604 1.11144 0.90829 1.25033 0.98739 0.94838 0.94710 1.69903 1.30035 1.28574 1.25541 0.86866 0.83929 0.76149 0.81429 1.20666 1.22558 1.18927 1.21818 0.99744 0.97689 0.95802 1.21825 0.89285 0.90919 0.99139 1.73687 1.02503 1.12514 1.19285 0.89199 0.88068 0.88367 0.79232 0.92197 0.86955 0.91910 0.92632 0.95420 0.92732 0.92198 0.91266 0.89597 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.32 59.85 0.68 1.09 16 2 N -0.29 -2.90 3.72 -67.95 -0.25 -3.15 16 3 C 0.02 0.20 11.48 -16.88 -0.19 0.01 16 4 C -0.16 -2.16 6.68 -39.33 -0.26 -2.42 16 5 Br 0.01 0.14 32.73 -68.01 -2.23 -2.09 16 6 C 0.02 0.40 6.83 -82.76 -0.57 -0.17 16 7 C 0.59 10.88 7.69 -12.41 -0.10 10.78 16 8 O -0.52 -10.45 15.05 5.30 0.08 -10.37 16 9 N -0.59 -10.79 2.97 -173.68 -0.52 -11.31 16 10 C 0.08 1.50 6.14 -3.49 -0.02 1.48 16 11 C -0.13 -2.83 4.86 -26.39 -0.13 -2.96 16 12 C 0.01 0.30 1.65 -91.73 -0.15 0.15 16 13 C -0.51 -14.25 9.14 -34.44 -0.31 -14.57 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 16 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 17 Si 0.89 21.53 24.38 -169.99 -4.14 17.39 16 18 H -0.28 -6.56 6.86 56.52 0.39 -6.17 16 19 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.26 -6.08 6.53 56.52 0.37 -5.72 16 21 C -0.11 -2.27 5.30 -26.61 -0.14 -2.41 16 22 C 0.11 1.97 6.44 -3.71 -0.02 1.94 16 23 N -0.24 -3.46 8.44 33.42 0.28 -3.18 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.17 8.13 -51.93 -0.42 -0.25 16 27 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.11 1.93 4.15 -73.29 -0.30 1.62 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.06 1.24 3.24 -51.93 -0.17 1.08 16 32 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.09 1.50 7.00 -51.93 -0.36 1.14 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -34.14 315.77 -7.18 -41.32 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.61 Total: -1.34 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.32 Total: -5.23 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.29 Total: -44.43 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.39 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -2.23 Total: -2.09 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.14 -7.18 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570113223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.534 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds