Wall clock time and date at job start Tue Mar 31 2020 23:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35618 * 124.93510 * 2 1 4 4 C 1.35438 * 107.13640 * 180.02562 * 3 2 1 5 5 Br 1.89104 * 127.23640 * 179.74454 * 4 3 2 6 6 C 1.41533 * 105.52897 * 0.02562 * 4 3 2 7 7 C 1.47674 * 126.46745 * 180.02562 * 6 4 3 8 8 O 1.21575 * 119.99812 * 6.33906 * 7 6 4 9 9 N 1.34779 * 120.00142 * 186.34169 * 7 6 4 10 10 C 1.46926 * 120.63134 * 6.71701 * 9 7 6 11 11 C 1.53621 * 108.54168 * 126.36644 * 10 9 7 12 12 C 1.53042 * 109.23734 * 54.86305 * 11 10 9 13 13 C 1.50705 * 109.44687 * 178.49481 * 12 11 10 14 14 H 1.08002 * 120.00198 * 120.05925 * 13 12 11 15 15 C 1.37872 * 120.00132 * 300.05570 * 13 12 11 16 16 N 1.31509 * 120.00062 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99731 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47331 * 90.00000 * 17 15 13 19 19 H 1.48510 * 109.46972 * 209.99684 * 17 15 13 20 20 H 1.48495 * 109.47502 * 329.99419 * 17 15 13 21 21 C 1.53037 * 109.53782 * 298.50663 * 12 11 10 22 22 C 1.46924 * 120.62756 * 187.00321 * 9 7 6 23 23 N 1.28470 * 124.93469 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47019 * 89.99167 * 1 2 3 25 25 H 1.08996 * 109.46963 * 209.99562 * 1 2 3 26 26 H 1.09003 * 109.46710 * 329.99830 * 1 2 3 27 27 H 1.08001 * 126.43387 * 0.03251 * 3 2 1 28 28 H 1.09000 * 109.59086 * 246.20679 * 10 9 7 29 29 H 1.09007 * 109.58403 * 6.62801 * 10 9 7 30 30 H 1.08996 * 109.63883 * 294.87175 * 11 10 9 31 31 H 1.09000 * 109.43027 * 174.72535 * 11 10 9 32 32 H 1.08997 * 109.46423 * 58.52767 * 12 11 10 33 33 H 0.97006 * 120.00023 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.49744 * 301.41674 * 21 12 11 35 35 H 1.08997 * 109.50249 * 181.32122 * 21 12 11 36 36 H 1.08995 * 109.59199 * 353.37046 * 22 9 7 37 37 H 1.09001 * 109.58609 * 113.66039 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1118 0.0000 4 6 3.5312 0.6978 -0.0006 5 35 5.0809 1.7815 -0.0076 6 6 3.4751 -0.7164 -0.0015 7 6 4.6270 -1.6405 -0.0019 8 8 5.7560 -1.2047 0.1149 9 7 4.4268 -2.9670 -0.1317 10 6 3.0873 -3.4972 -0.4203 11 6 3.1752 -4.3968 -1.6625 12 6 4.2400 -5.4717 -1.4323 13 6 4.3043 -6.3795 -2.6335 14 1 5.2243 -6.4726 -3.1915 15 6 3.1886 -7.0914 -3.0201 16 7 3.2446 -7.8833 -4.0686 17 14 1.5972 -6.9300 -2.0554 18 1 0.7835 -5.8255 -2.6238 19 1 0.8348 -8.2016 -2.1418 20 1 1.9079 -6.6349 -0.6336 21 6 5.6020 -4.8062 -1.2228 22 6 5.5428 -3.9107 0.0188 23 7 2.2007 -1.0532 -0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 1.8966 2.1352 0.0005 28 1 2.7331 -4.0785 0.4310 29 1 2.4014 -2.6721 -0.6127 30 1 3.4459 -3.7966 -2.5311 31 1 2.2096 -4.8723 -1.8348 32 1 3.9815 -6.0557 -0.5491 33 1 2.4595 -8.3839 -4.3408 34 1 5.8499 -4.2021 -2.0955 35 1 6.3639 -5.5729 -1.0823 36 1 6.4776 -3.3587 0.1162 37 1 5.3860 -4.5234 0.9065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570113223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:14 Heat of formation + Delta-G solvation = 44.926784 kcal Electronic energy + Delta-G solvation = -22149.809533 eV Core-core repulsion = 18782.151730 eV Total energy + Delta-G solvation = -3367.657803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.81724 -40.93234 -38.53434 -35.39085 -34.71024 -33.57921 -32.82575 -31.97960 -30.57524 -28.87485 -27.83009 -25.06761 -24.24272 -23.24203 -22.40539 -21.46973 -20.15312 -18.85780 -18.35860 -17.80574 -17.47028 -16.84854 -16.55221 -16.06017 -15.31904 -15.12535 -14.84176 -14.80965 -14.57325 -14.26968 -14.23701 -13.79357 -13.65071 -13.45316 -13.40032 -12.86029 -12.36058 -12.25794 -12.15732 -12.11247 -11.67575 -11.54160 -11.45235 -11.04135 -11.03056 -10.69233 -10.58274 -10.35213 -9.86269 -9.55729 -8.28418 -6.32958 0.33978 0.60489 0.79614 1.30465 1.37593 1.48298 1.54319 2.01278 2.21461 2.34282 3.06291 3.22124 3.58758 3.79086 4.05145 4.14417 4.23187 4.26087 4.31129 4.42642 4.43410 4.44410 4.56262 4.71841 4.73507 4.77241 4.94624 5.01618 5.03266 5.12936 5.37703 5.55135 5.67051 5.69179 5.79345 6.31604 6.33596 6.65713 6.73639 7.07471 7.32291 8.88785 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.003892 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.376343 B = 7193.225620 C = 8314.969261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.274 5.274 3 C 0.050 3.950 4 C -0.187 4.187 5 Br 0.002 6.998 6 C -0.011 4.011 7 C 0.587 3.413 8 O -0.550 6.550 9 N -0.594 5.594 10 C 0.093 3.907 11 C -0.127 4.127 12 C 0.013 3.987 13 C -0.521 4.521 14 H 0.028 0.972 15 C 0.008 3.992 16 N -0.953 5.953 17 Si 0.950 3.050 18 H -0.263 1.263 19 H -0.300 1.300 20 H -0.238 1.238 21 C -0.106 4.106 22 C 0.117 3.883 23 N -0.261 5.261 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.138 0.862 27 H 0.238 0.762 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.265 0.735 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 24.432 13.075 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.061 5.061 3 C -0.097 4.097 4 C -0.278 4.278 5 Br 0.086 6.914 6 C -0.171 4.171 7 C 0.374 3.626 8 O -0.427 6.427 9 N -0.326 5.326 10 C -0.030 4.030 11 C -0.165 4.165 12 C -0.006 4.006 13 C -0.559 4.559 14 H 0.046 0.954 15 C -0.189 4.189 16 N -0.594 5.594 17 Si 0.776 3.224 18 H -0.189 1.189 19 H -0.227 1.227 20 H -0.161 1.161 21 C -0.144 4.144 22 C -0.005 4.005 23 N -0.097 5.097 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.156 0.844 27 H 0.255 0.745 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.845 24.004 13.042 28.714 hybrid contribution -0.184 -0.334 -0.494 0.624 sum -9.030 23.670 12.548 28.271 Atomic orbital electron populations 1.22815 0.69219 1.08005 1.06602 1.46304 1.09706 1.02195 1.47899 1.23440 0.87669 0.95759 1.02842 1.22143 0.94775 0.92933 1.17921 1.96644 1.33542 1.63260 1.97967 1.21686 0.91283 0.93055 1.11120 1.17272 0.86967 0.81500 0.76849 1.90777 1.23344 1.76703 1.51847 1.48031 1.10954 1.05121 1.68496 1.22619 0.83476 0.99748 0.97131 1.22272 0.99366 0.97609 0.97291 1.19117 0.93054 0.92796 0.95589 1.21379 0.97477 1.24667 1.12338 0.95390 1.25967 1.02902 0.94256 0.95728 1.70071 1.31387 1.30104 1.27811 0.85814 0.78888 0.76467 0.81190 1.18853 1.22746 1.16145 1.21699 0.98344 0.97831 0.96544 1.21729 0.89801 0.90709 0.98226 1.73436 1.02051 1.14403 1.19859 0.87811 0.87801 0.84356 0.74538 0.90807 0.85315 0.93651 0.93004 0.94838 0.92607 0.94168 0.91082 0.89331 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 11.32 127.77 1.45 1.78 16 2 N -0.27 -4.40 3.72 -368.91 -1.37 -5.77 16 3 C 0.05 0.75 11.48 83.46 0.96 1.71 16 4 C -0.19 -4.64 6.68 22.44 0.15 -4.49 16 5 Br 0.00 0.06 32.73 -20.37 -0.67 -0.61 16 6 C -0.01 -0.35 6.83 42.45 0.29 -0.06 16 7 C 0.59 21.19 7.69 86.74 0.67 21.85 16 8 O -0.55 -21.88 15.05 -3.95 -0.06 -21.94 16 9 N -0.59 -21.20 2.97 -821.66 -2.44 -23.64 16 10 C 0.09 3.20 6.14 86.51 0.53 3.73 16 11 C -0.13 -5.33 4.86 30.82 0.15 -5.18 16 12 C 0.01 0.62 1.65 -11.51 -0.02 0.60 16 13 C -0.52 -30.05 9.14 25.60 0.23 -29.82 16 14 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 15 C 0.01 0.46 5.45 84.65 0.46 0.92 16 16 N -0.95 -60.19 13.96 21.44 0.30 -59.89 16 17 Si 0.95 43.80 24.38 68.60 1.67 45.47 16 18 H -0.26 -11.34 6.86 99.48 0.68 -10.66 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.24 -9.90 6.53 99.48 0.65 -9.25 16 21 C -0.11 -4.35 5.30 30.67 0.16 -4.19 16 22 C 0.12 4.09 6.44 86.36 0.56 4.65 16 23 N -0.26 -6.60 8.44 -48.18 -0.41 -7.01 16 24 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 25 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.14 -0.40 8.13 -2.39 -0.02 -0.42 16 27 H 0.24 1.12 8.06 -2.91 -0.02 1.09 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.13 4.09 4.15 -30.03 -0.12 3.96 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 2.20 3.24 -2.39 -0.01 2.20 16 32 H 0.03 1.52 7.20 -2.39 -0.02 1.51 16 33 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.09 3.07 7.00 -2.39 -0.02 3.05 16 37 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -78.14 315.77 3.52 -74.62 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.90 Total: 7.25 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 5.59 Total: -8.49 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -3.91 Total: -96.31 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.47 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -0.67 Total: -0.61 kcal Total: -78.14 3.52 -74.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570113223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.548 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds