Wall clock time and date at job start Tue Mar 31 2020 23:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48504 * 109.46809 * 269.99983 * 3 2 1 5 5 H 1.48498 * 109.47348 * 29.99515 * 3 2 1 6 6 H 1.48497 * 109.47596 * 150.00046 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00001 * 197.85192 * 7 2 1 9 9 C 1.41396 * 120.00320 * 17.85953 * 7 2 1 10 10 C 1.40738 * 120.23936 * 24.38178 * 9 7 2 11 11 C 1.37598 * 119.73833 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25336 * 0.27195 * 11 10 9 13 13 C 1.38607 * 120.49725 * 359.45075 * 12 11 10 14 14 S 1.76199 * 119.87596 * 180.30308 * 13 12 11 15 15 O 1.42099 * 106.40213 * 23.78603 * 14 13 12 16 16 O 1.42094 * 106.40634 * 156.71197 * 14 13 12 17 17 N 1.65602 * 107.21546 * 270.24812 * 14 13 12 18 18 C 1.46506 * 119.99971 * 65.00128 * 17 14 13 19 19 C 1.53002 * 109.47179 * 165.00033 * 18 17 14 20 20 F 1.39897 * 109.46866 * 299.99581 * 19 18 17 21 21 F 1.39899 * 109.47285 * 59.99814 * 19 18 17 22 22 C 1.52998 * 109.47055 * 179.97438 * 19 18 17 23 23 F 1.39899 * 109.47107 * 59.99851 * 22 19 18 24 24 F 1.39902 * 109.47381 * 179.97438 * 22 19 18 25 25 C 1.37640 * 120.25120 * 0.54951 * 13 12 11 26 26 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.13165 * 359.97438 * 10 9 7 28 28 H 1.08010 * 119.87364 * 180.02562 * 11 10 9 29 29 H 1.07997 * 119.74663 * 179.72796 * 12 11 10 30 30 H 0.96993 * 120.00229 * 244.99890 * 17 14 13 31 31 H 1.09006 * 109.46662 * 284.99720 * 18 17 14 32 32 H 1.08996 * 109.47339 * 44.99529 * 18 17 14 33 33 H 1.09006 * 109.46842 * 299.99723 * 22 19 18 34 34 H 1.08002 * 120.12915 * 179.75046 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0491 -1.2343 0.2873 9 6 1.3522 -2.4072 -0.3745 10 6 0.2208 -2.3626 -1.2103 11 6 -0.4092 -3.5321 -1.5692 12 6 0.0633 -4.7506 -1.1062 13 6 1.1801 -4.8068 -0.2871 14 16 1.7712 -6.3648 0.2854 15 8 1.3101 -7.3353 -0.6445 16 8 3.1445 -6.1817 0.6010 17 7 1.0015 -6.6853 1.7162 18 6 -0.4486 -6.8937 1.7373 19 6 -0.8532 -7.5290 3.0690 20 9 -0.2033 -8.7591 3.2154 21 9 -0.4887 -6.6809 4.1202 22 6 -2.3676 -7.7460 3.0912 23 9 -2.7327 -8.5938 2.0400 24 9 -2.7376 -8.3274 4.3087 25 6 1.8262 -3.6497 0.0848 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1516 -1.4143 -1.5686 28 1 -1.2774 -3.5004 -2.2109 29 1 -0.4400 -5.6632 -1.3894 30 1 1.5106 -6.7352 2.5403 31 1 -0.9550 -5.9352 1.6232 32 1 -0.7326 -7.5544 0.9183 33 1 -2.8737 -6.7873 2.9773 34 1 2.6938 -3.6955 0.7263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589589105.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:21 Heat of formation + Delta-G solvation = -279.030525 kcal Electronic energy + Delta-G solvation = -27760.591608 eV Core-core repulsion = 22897.747558 eV Total energy + Delta-G solvation = -4862.844050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.050 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.94377 -49.71493 -48.57598 -48.12897 -39.44374 -38.36930 -36.99354 -36.73384 -35.65936 -31.92717 -31.89523 -31.58727 -27.34805 -26.90752 -23.71137 -23.39808 -22.77501 -20.84948 -19.88357 -19.56066 -19.29881 -19.13818 -18.30812 -17.81053 -17.70517 -17.51712 -16.87607 -16.75426 -16.49360 -15.83943 -15.65215 -15.38194 -15.22780 -15.14072 -15.04972 -14.76786 -14.70102 -14.54220 -14.28925 -13.95832 -13.70581 -13.61956 -13.33813 -13.22749 -13.12987 -13.05296 -13.03497 -12.80329 -12.60042 -12.21226 -11.89391 -11.55573 -11.41442 -11.14216 -10.76473 -9.85356 -9.54978 -8.73168 -6.44511 -0.63765 0.39172 0.85795 1.38604 1.46428 1.50394 1.54324 1.96836 2.18099 2.36357 2.54307 2.67880 2.76117 2.81663 2.96882 3.39425 3.53516 3.65067 3.72911 4.11967 4.27820 4.30624 4.39116 4.47692 4.87673 4.92340 5.06194 5.21043 5.41339 5.56866 5.76394 5.90795 5.95480 6.12368 6.53968 6.80677 6.85557 8.24431 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003440 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.585927 B = 8136.922940 C = 8765.555326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.041 3.959 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.063 3.937 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.144 4.144 13 C -0.637 4.637 14 S 2.725 3.275 15 O -0.977 6.977 16 O -0.990 6.990 17 N -1.110 6.110 18 C 0.067 3.933 19 C 0.244 3.756 20 F -0.187 7.187 21 F -0.175 7.175 22 C 0.240 3.760 23 F -0.183 7.183 24 F -0.194 7.194 25 C -0.145 4.145 26 H 0.292 0.708 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.428 0.572 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.197 0.803 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 -9.011 5.191 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.175 4.175 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.059 3.941 10 C -0.158 4.158 11 C -0.139 4.139 12 C -0.165 4.165 13 C -0.727 4.727 14 S 2.818 3.182 15 O -0.967 6.967 16 O -0.980 6.980 17 N -0.871 5.871 18 C -0.060 4.060 19 C 0.205 3.795 20 F -0.168 7.168 21 F -0.156 7.156 22 C 0.185 3.815 23 F -0.164 7.164 24 F -0.175 7.175 25 C -0.166 4.166 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.148 0.852 29 H 0.159 0.841 30 H 0.264 0.736 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.213 0.787 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.172 -9.465 4.686 12.766 hybrid contribution 0.431 1.290 0.655 1.510 sum -6.742 -8.174 5.341 11.866 Atomic orbital electron populations 1.69789 1.08698 1.30954 1.34939 1.26644 0.95531 1.04194 0.91091 0.85240 0.79123 0.76101 0.79563 1.18718 1.18977 1.18569 1.19864 0.98529 0.92413 1.42060 0.90597 1.18021 0.92719 0.92791 0.90526 1.21674 0.98095 0.97922 0.98125 1.21166 0.99963 0.92471 1.00265 1.20540 0.96485 0.98309 1.01165 1.30093 1.09531 1.18468 1.14592 1.00691 0.72013 0.73388 0.72083 1.93515 1.82234 1.59051 1.61851 1.93522 1.32987 1.87337 1.84162 1.55160 1.15882 1.88819 1.27214 1.22620 0.82062 1.05329 0.96017 1.22487 0.92573 0.76751 0.87705 1.93096 1.83386 1.43983 1.96343 1.93119 1.92621 1.70406 1.59455 1.23164 0.91346 0.94671 0.72346 1.93078 1.92050 1.74355 1.56943 1.93056 1.92191 1.87038 1.45186 1.20848 1.01114 0.92124 1.02542 0.89707 0.86960 0.85184 0.84149 0.73584 0.84928 0.85001 0.78656 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.09 10.95 21.83 0.24 -38.85 16 2 C 0.04 1.95 5.14 85.25 0.44 2.38 16 3 Si 0.98 36.01 29.60 68.60 2.03 38.04 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 7 C -0.50 -25.53 9.05 23.46 0.21 -25.32 16 8 H 0.08 3.82 7.91 -2.91 -0.02 3.79 16 9 C 0.06 3.16 5.58 -21.29 -0.12 3.04 16 10 C -0.14 -6.54 8.70 22.73 0.20 -6.35 16 11 C -0.12 -4.75 10.02 22.22 0.22 -4.53 16 12 C -0.14 -5.33 9.53 22.46 0.21 -5.12 16 13 C -0.64 -24.99 5.94 22.22 0.13 -24.86 16 14 S 2.72 91.08 5.73 -56.49 -0.32 90.76 16 15 O -0.98 -34.57 16.74 -128.00 -2.14 -36.72 16 16 O -0.99 -39.14 17.27 -128.00 -2.21 -41.35 16 17 N -1.11 -27.99 5.88 -187.47 -1.10 -29.10 16 18 C 0.07 1.30 5.61 86.38 0.48 1.79 16 19 C 0.24 4.56 1.66 30.59 0.05 4.61 16 20 F -0.19 -4.32 16.94 44.97 0.76 -3.56 16 21 F -0.18 -3.61 16.75 44.97 0.75 -2.86 16 22 C 0.24 3.34 4.83 71.98 0.35 3.69 16 23 F -0.18 -3.03 16.80 44.97 0.76 -2.28 16 24 F -0.19 -3.54 17.30 44.97 0.78 -2.76 16 25 C -0.15 -6.69 9.26 22.73 0.21 -6.47 16 26 H 0.29 12.53 8.30 -92.71 -0.77 11.76 16 27 H 0.11 5.51 6.15 -2.91 -0.02 5.49 16 28 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.14 4.25 7.60 -2.91 -0.02 4.22 16 30 H 0.43 9.73 8.44 -96.75 -0.82 8.92 16 31 H 0.13 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.13 2.31 7.41 -2.39 -0.02 2.29 16 33 H 0.20 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.11 4.91 7.60 -2.91 -0.02 4.88 16 Total: -1.00 -65.66 328.36 2.30 -63.36 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.37 Total: 22.45 kcal Atomic # 6 Polarization: -59.53 SS G_CDS: 2.39 Total: -57.14 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.86 Total: -67.95 kcal Atomic # 8 Polarization: -73.71 SS G_CDS: -4.35 Total: -78.06 kcal Atomic # 9 Polarization: -14.50 SS G_CDS: 3.05 Total: -11.45 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Atomic # 16 Polarization: 91.08 SS G_CDS: -0.32 Total: 90.76 kcal Total: -65.66 2.30 -63.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589589105.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.674 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -279.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds