Wall clock time and date at job start Tue Mar 31 2020 23:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47183 * 2 1 4 4 C 1.52996 * 109.47580 * 240.00047 * 2 1 3 5 5 C 1.50704 * 109.47097 * 64.99615 * 4 2 1 6 6 O 1.21287 * 119.99899 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99774 * 180.02562 * 5 4 2 8 8 C 1.37103 * 119.99690 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99814 * 224.48494 * 8 7 5 10 10 C 1.38945 * 119.99996 * 44.48977 * 8 7 5 11 11 N 1.31413 * 119.99961 * 17.99032 * 10 8 7 12 12 Si 1.86803 * 119.99913 * 197.99645 * 10 8 7 13 13 H 1.48506 * 109.46890 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47223 * 119.99733 * 12 10 8 15 15 H 1.48503 * 109.46657 * 239.99842 * 12 10 8 16 16 C 1.46496 * 120.00325 * 0.02562 * 7 5 4 17 17 C 1.52999 * 117.50227 * 183.27291 * 16 7 5 18 18 C 1.52995 * 117.50257 * 114.61070 * 16 7 5 19 19 N 1.46505 * 109.47397 * 119.99921 * 2 1 3 20 20 C 1.35018 * 126.03419 * 34.99588 * 19 2 1 21 21 C 1.35359 * 107.73113 * 180.02562 * 20 19 2 22 22 Br 1.89098 * 126.04135 * 179.97438 * 21 20 19 23 23 C 1.39912 * 107.91033 * 0.24969 * 21 20 19 24 24 N 1.30843 * 108.20917 * 359.58741 * 23 21 20 25 25 H 1.09003 * 109.47187 * 60.00226 * 1 2 3 26 26 H 1.09004 * 109.46796 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47550 * 299.99751 * 1 2 3 28 28 H 1.08998 * 109.47848 * 185.00099 * 4 2 1 29 29 H 1.09006 * 109.46776 * 304.99917 * 4 2 1 30 30 H 0.96999 * 119.99690 * 174.96541 * 11 10 8 31 31 H 1.09006 * 115.54665 * 328.93858 * 16 7 5 32 32 H 1.09007 * 117.49705 * 359.97438 * 17 16 7 33 33 H 1.09002 * 117.50266 * 145.01781 * 17 16 7 34 34 H 1.09000 * 117.50235 * 214.97968 * 18 16 7 35 35 H 1.09002 * 117.49978 * 359.97438 * 18 16 7 36 36 H 1.08001 * 126.13060 * 0.06544 * 20 19 2 37 37 H 1.08000 * 125.89360 * 179.71813 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0116 1.0874 -2.3633 7 7 1.9846 -0.3919 -3.7001 8 6 1.6223 0.3164 -4.8167 9 1 1.2174 -0.1988 -5.6752 10 6 1.7762 1.6970 -4.8439 11 7 2.5728 2.2865 -3.9808 12 14 0.8506 2.7153 -6.1071 13 1 0.0261 1.8192 -6.9573 14 1 -0.0309 3.6864 -5.4105 15 1 1.8210 3.4496 -6.9582 16 6 2.7447 -1.6367 -3.8370 17 6 3.1700 -2.0535 -5.2464 18 6 2.0535 -2.8144 -4.5270 19 7 2.0184 -0.6906 1.1962 20 6 1.4399 -1.7564 1.7899 21 6 2.1963 -2.0927 2.8608 22 35 1.8567 -3.5143 4.0605 23 6 3.2704 -1.1984 2.9268 24 7 3.1675 -0.3613 1.9265 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1264 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 2.7372 3.2402 -4.0455 31 1 3.4271 -1.8634 -3.0177 32 1 2.8839 -1.4016 -6.0719 33 1 4.1320 -2.5547 -5.3543 34 1 2.2813 -3.8159 -4.1620 35 1 1.0330 -2.6632 -4.8788 36 1 0.5361 -2.2521 1.4676 37 1 4.0508 -1.2002 3.6733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592587561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:45 Heat of formation + Delta-G solvation = 67.415515 kcal Electronic energy + Delta-G solvation = -21889.728568 eV Core-core repulsion = 18523.045949 eV Total energy + Delta-G solvation = -3366.682618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38269 -40.53048 -38.06519 -36.33701 -34.69755 -32.92876 -32.70445 -31.40958 -29.60742 -29.18810 -26.67843 -24.36427 -23.15343 -22.81704 -22.01618 -21.57550 -20.65893 -18.61557 -17.92079 -17.64501 -16.69323 -16.62994 -16.05875 -15.73539 -15.56769 -15.35114 -14.68235 -14.53067 -14.21626 -14.06277 -13.93004 -13.63489 -13.16450 -12.96143 -12.81174 -12.50480 -12.41931 -12.26612 -12.17822 -12.05643 -11.95323 -11.83962 -11.66543 -11.23617 -11.02360 -10.75980 -10.61980 -9.97465 -9.42092 -8.97295 -8.20820 -5.99684 0.65899 0.75998 1.36596 1.43591 1.51364 1.54410 1.57101 2.21492 2.38468 3.06431 3.11903 3.32324 3.48649 3.72963 3.76406 3.93555 3.99495 4.10535 4.19598 4.28665 4.39737 4.46431 4.54450 4.56415 4.68171 4.77973 4.88916 4.91766 5.04227 5.24345 5.28084 5.40486 5.45827 5.50260 5.86625 6.19550 6.56832 7.02832 7.16210 7.68554 8.32175 8.87487 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.002925 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.601561 B = 9570.481117 C =10263.144107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.186 3.814 3 H 0.076 0.924 4 C -0.124 4.124 5 C 0.478 3.522 6 O -0.574 6.574 7 N -0.441 5.441 8 C -0.353 4.353 9 H 0.079 0.921 10 C 0.025 3.975 11 N -0.872 5.872 12 Si 0.968 3.032 13 H -0.257 1.257 14 H -0.294 1.294 15 H -0.277 1.277 16 C 0.041 3.959 17 C -0.173 4.173 18 C -0.174 4.174 19 N -0.357 5.357 20 C 0.102 3.898 21 C -0.257 4.257 22 Br -0.011 7.011 23 C 0.075 3.925 24 N -0.327 5.327 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.259 0.741 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.207 0.793 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 -14.848 13.480 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.084 3.916 3 H 0.094 0.906 4 C -0.166 4.166 5 C 0.266 3.734 6 O -0.455 6.455 7 N -0.161 5.161 8 C -0.481 4.481 9 H 0.097 0.903 10 C -0.181 4.181 11 N -0.507 5.507 12 Si 0.794 3.206 13 H -0.181 1.181 14 H -0.221 1.221 15 H -0.203 1.203 16 C -0.064 4.064 17 C -0.210 4.210 18 C -0.213 4.213 19 N -0.137 5.137 20 C -0.048 4.048 21 C -0.348 4.348 22 Br 0.072 6.928 23 C -0.113 4.113 24 N -0.148 5.148 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.097 0.903 36 H 0.224 0.776 37 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.138 -13.544 13.320 19.031 hybrid contribution -0.265 0.717 -0.585 0.963 sum -1.403 -12.828 12.735 18.130 Atomic orbital electron populations 1.22183 0.90705 1.04175 1.04092 1.20840 0.96201 0.95296 0.79217 0.90555 1.21807 1.02111 1.00616 0.92020 1.20151 0.82116 0.86502 0.84610 1.90480 1.43276 1.25836 1.85917 1.42952 1.47750 1.20526 1.04867 1.19114 1.43718 0.89466 0.95793 0.90347 1.26014 0.95214 0.98927 0.97967 1.69945 1.33272 1.10703 1.36820 0.85280 0.78643 0.78553 0.78151 1.18100 1.22056 1.20282 1.21990 0.99435 0.87342 0.97663 1.23122 0.99792 1.02917 0.95184 1.23327 0.97207 0.96594 1.04162 1.49015 1.18757 1.23792 1.22160 1.22873 0.99508 0.89542 0.92884 1.21876 1.03968 1.05185 1.03733 1.96585 1.95719 1.42063 1.58467 1.24302 0.98536 0.91638 0.96779 1.77529 1.04145 1.24966 1.08116 0.90145 0.89512 0.91244 0.90523 0.87236 0.93195 0.86529 0.89897 0.86829 0.85869 0.90269 0.77594 0.77118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 8.58 71.98 0.62 -3.89 16 2 C 0.19 6.28 3.05 44.99 0.14 6.42 16 3 H 0.08 3.16 7.95 -2.39 -0.02 3.14 16 4 C -0.12 -4.42 4.12 29.85 0.12 -4.30 16 5 C 0.48 22.64 6.68 87.66 0.59 23.22 16 6 O -0.57 -31.62 11.74 -3.05 -0.04 -31.65 16 7 N -0.44 -20.98 2.83 -613.15 -1.74 -22.71 16 8 C -0.35 -18.72 7.91 84.04 0.66 -18.05 16 9 H 0.08 4.03 7.27 -2.91 -0.02 4.01 16 10 C 0.03 1.39 4.39 84.92 0.37 1.76 16 11 N -0.87 -51.86 11.75 21.66 0.25 -51.61 16 12 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 13 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 16 C 0.04 1.50 5.87 44.99 0.26 1.77 16 17 C -0.17 -5.69 9.80 30.62 0.30 -5.39 16 18 C -0.17 -5.15 10.36 30.62 0.32 -4.83 16 19 N -0.36 -10.56 3.53 -327.40 -1.16 -11.72 16 20 C 0.10 2.38 10.56 83.54 0.88 3.26 16 21 C -0.26 -5.81 6.53 22.01 0.14 -5.66 16 22 Br -0.01 -0.20 34.08 -20.37 -0.69 -0.89 16 23 C 0.07 1.85 12.01 85.25 1.02 2.88 16 24 N -0.33 -10.39 12.57 -56.99 -0.72 -11.10 16 25 H 0.08 2.96 5.95 -2.39 -0.01 2.95 16 26 H 0.09 1.95 7.16 -2.38 -0.02 1.93 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 2.83 7.57 -2.39 -0.02 2.81 16 29 H 0.11 3.21 8.11 -2.38 -0.02 3.19 16 30 H 0.26 14.92 8.32 -92.71 -0.77 14.15 16 31 H 0.12 3.88 6.96 -2.38 -0.02 3.87 16 32 H 0.08 3.16 6.73 -2.38 -0.02 3.15 16 33 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.21 3.45 7.26 -2.91 -0.02 3.43 16 37 H 0.21 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -69.13 331.16 4.46 -64.67 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.09 Total: 21.25 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.43 Total: -2.82 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -3.35 Total: -97.14 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.04 Total: -31.65 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.89 kcal Total: -69.13 4.46 -64.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592587561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.084 kcal (2) G-P(sol) polarization free energy of solvation -69.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds