Wall clock time and date at job start Tue Mar 31 2020 23:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46958 * 2 1 4 4 C 1.53001 * 109.47351 * 119.99753 * 2 1 3 5 5 C 1.50703 * 109.47188 * 295.00362 * 4 2 1 6 6 O 1.21292 * 119.99944 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99754 * 180.02562 * 5 4 2 8 8 C 1.37100 * 119.99799 * 179.97438 * 7 5 4 9 9 H 1.08002 * 119.99945 * 224.28962 * 8 7 5 10 10 C 1.38951 * 119.99885 * 44.29245 * 8 7 5 11 11 N 1.31412 * 120.00099 * 18.22424 * 10 8 7 12 12 Si 1.86799 * 120.00076 * 198.22556 * 10 8 7 13 13 H 1.48505 * 109.46852 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47334 * 120.00268 * 12 10 8 15 15 H 1.48508 * 109.46990 * 239.99962 * 12 10 8 16 16 C 1.46499 * 120.00353 * 359.97438 * 7 5 4 17 17 C 1.52995 * 117.49848 * 183.22618 * 16 7 5 18 18 C 1.52996 * 117.50238 * 114.60256 * 16 7 5 19 19 N 1.46493 * 109.47130 * 240.00499 * 2 1 3 20 20 C 1.35024 * 126.03432 * 324.99195 * 19 2 1 21 21 C 1.35357 * 107.73502 * 179.97438 * 20 19 2 22 22 Br 1.89095 * 126.04664 * 180.02562 * 21 20 19 23 23 C 1.39927 * 107.90922 * 359.97438 * 21 20 19 24 24 N 1.30847 * 108.20745 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46721 * 299.99815 * 1 2 3 27 27 H 1.09000 * 109.47099 * 59.99802 * 1 2 3 28 28 H 1.08994 * 109.46814 * 55.00082 * 4 2 1 29 29 H 1.08996 * 109.47073 * 175.00235 * 4 2 1 30 30 H 0.96997 * 120.00371 * 174.92877 * 11 10 8 31 31 H 1.08996 * 115.54496 * 328.93638 * 16 7 5 32 32 H 1.09001 * 117.50419 * 359.97438 * 17 16 7 33 33 H 1.09006 * 117.49696 * 145.02306 * 17 16 7 34 34 H 1.08998 * 117.50071 * 214.98540 * 18 16 7 35 35 H 1.09009 * 117.49677 * 359.97438 * 18 16 7 36 36 H 1.07998 * 126.13025 * 0.24447 * 20 19 2 37 37 H 1.07997 * 125.89339 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0571 2.4766 6 8 1.0116 1.0875 2.3633 7 7 1.9854 -0.3913 3.7001 8 6 1.6232 0.3170 4.8167 9 1 2.3380 0.4768 5.6103 10 6 0.3363 0.8292 4.9272 11 7 -0.6269 0.3553 4.1692 12 14 -0.0246 2.1916 6.1533 13 1 1.2208 2.5457 6.8805 14 1 -0.5333 3.3853 5.4313 15 1 -1.0484 1.7262 7.1232 16 6 2.7465 -1.6356 3.8370 17 6 3.0413 -2.1311 5.2541 18 6 4.1649 -1.5376 4.4021 19 7 2.0184 -0.6905 -1.1962 20 6 1.4399 -1.7564 -1.7898 21 6 2.1962 -2.0926 -2.8609 22 35 1.8567 -3.5143 -4.0605 23 6 3.2730 -1.2013 -2.9241 24 7 3.1673 -0.3609 -1.9267 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.6055 -1.7197 1.2952 29 1 3.1264 -0.7993 1.2056 30 1 -1.5389 0.6600 4.2967 31 1 2.5615 -2.3866 3.0691 32 1 2.6693 -1.5312 6.0847 33 1 3.0501 -3.2086 5.4189 34 1 4.9130 -2.2245 4.0063 35 1 4.5320 -0.5473 4.6717 36 1 0.5338 -2.2493 -1.4701 37 1 4.0566 -1.2067 -3.6672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592587563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:48 Heat of formation + Delta-G solvation = 68.217073 kcal Electronic energy + Delta-G solvation = -21915.129091 eV Core-core repulsion = 18548.481231 eV Total energy + Delta-G solvation = -3366.647860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.37944 -40.52971 -38.06715 -36.32876 -34.68861 -32.92490 -32.70657 -31.40354 -29.61497 -29.16427 -26.68051 -24.35115 -23.16898 -22.81391 -22.01859 -21.57099 -20.63518 -18.62927 -17.92556 -17.66079 -16.70839 -16.40787 -16.18116 -15.83313 -15.68951 -15.05083 -14.73415 -14.62786 -14.20579 -14.07145 -13.85754 -13.63508 -13.20716 -12.89722 -12.78795 -12.53915 -12.45871 -12.27493 -12.19250 -12.05531 -11.96118 -11.84407 -11.64328 -11.23551 -11.02931 -10.74427 -10.60851 -9.95941 -9.42550 -8.97282 -8.19986 -5.97211 0.65530 0.74715 1.36716 1.44577 1.50923 1.54007 1.57089 2.23129 2.38121 3.06768 3.11736 3.33768 3.46615 3.72662 3.76226 3.93104 4.00081 4.09619 4.21387 4.28712 4.35826 4.47608 4.54398 4.56346 4.67656 4.78893 4.87442 4.90163 5.03250 5.24969 5.32289 5.41492 5.45526 5.51551 5.85485 6.21208 6.56094 7.03707 7.16273 7.69336 8.32438 8.88282 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.020605 B = 0.002948 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.566050 B = 9494.582607 C =10117.852084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.189 3.811 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.477 3.523 6 O -0.574 6.574 7 N -0.440 5.440 8 C -0.358 4.358 9 H 0.074 0.926 10 C 0.031 3.969 11 N -0.862 5.862 12 Si 0.964 3.036 13 H -0.263 1.263 14 H -0.294 1.294 15 H -0.274 1.274 16 C 0.044 3.956 17 C -0.167 4.167 18 C -0.184 4.184 19 N -0.357 5.357 20 C 0.099 3.901 21 C -0.255 4.255 22 Br -0.012 7.012 23 C 0.077 3.923 24 N -0.321 5.321 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.260 0.740 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.200 0.800 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -10.852 -14.012 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.087 3.913 3 H 0.106 0.894 4 C -0.166 4.166 5 C 0.266 3.734 6 O -0.455 6.455 7 N -0.160 5.160 8 C -0.485 4.485 9 H 0.091 0.909 10 C -0.176 4.176 11 N -0.497 5.497 12 Si 0.790 3.210 13 H -0.188 1.188 14 H -0.221 1.221 15 H -0.200 1.200 16 C -0.061 4.061 17 C -0.205 4.205 18 C -0.223 4.223 19 N -0.137 5.137 20 C -0.051 4.051 21 C -0.347 4.347 22 Br 0.070 6.930 23 C -0.111 4.111 24 N -0.141 5.141 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.200 -9.672 -13.842 17.669 hybrid contribution -0.718 0.447 0.668 1.078 sum 4.482 -9.224 -13.175 16.696 Atomic orbital electron populations 1.22150 0.91475 1.03580 1.03911 1.20829 0.95641 0.95631 0.79190 0.89449 1.21803 1.02580 1.00221 0.92001 1.20143 0.82688 0.86216 0.84387 1.90483 1.41972 1.27114 1.85959 1.42940 1.49514 1.19058 1.04496 1.19062 0.96043 1.34096 0.99299 0.90856 1.25896 0.95302 0.98668 0.97777 1.69894 1.00067 1.40956 1.38808 0.85344 0.78426 0.79099 0.78129 1.18753 1.22083 1.19961 1.22013 0.95220 0.89947 0.98948 1.23103 1.02087 1.01230 0.94051 1.23312 0.92028 1.02131 1.04804 1.49017 1.18917 1.23640 1.22143 1.22807 0.99466 0.89798 0.93044 1.21871 1.03939 1.05270 1.03581 1.96587 1.95774 1.42192 1.58425 1.24313 0.98398 0.91490 0.96876 1.77487 1.03875 1.24658 1.08071 0.90722 0.90216 0.91380 0.88556 0.89146 0.93032 0.85912 0.89909 0.86509 0.86127 0.90814 0.78352 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 8.58 71.98 0.62 -4.38 16 2 C 0.19 6.32 3.05 44.99 0.14 6.46 16 3 H 0.09 3.34 7.96 -2.38 -0.02 3.32 16 4 C -0.12 -4.41 4.12 29.85 0.12 -4.29 16 5 C 0.48 22.51 6.68 87.66 0.59 23.09 16 6 O -0.57 -31.46 11.73 -3.07 -0.04 -31.50 16 7 N -0.44 -20.89 2.83 -613.15 -1.74 -22.63 16 8 C -0.36 -18.94 7.92 84.04 0.67 -18.27 16 9 H 0.07 3.83 7.26 -2.91 -0.02 3.81 16 10 C 0.03 1.67 4.38 84.93 0.37 2.04 16 11 N -0.86 -48.98 11.74 21.66 0.25 -48.72 16 12 Si 0.96 44.23 29.59 68.60 2.03 46.26 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 C 0.04 1.61 5.87 44.99 0.26 1.88 16 17 C -0.17 -5.50 9.80 30.59 0.30 -5.20 16 18 C -0.18 -5.71 10.36 30.59 0.32 -5.39 16 19 N -0.36 -10.45 3.53 -327.39 -1.16 -11.60 16 20 C 0.10 2.41 10.56 83.54 0.88 3.30 16 21 C -0.26 -5.84 6.53 22.01 0.14 -5.70 16 22 Br -0.01 -0.23 34.08 -20.37 -0.69 -0.93 16 23 C 0.08 1.82 12.01 85.25 1.02 2.85 16 24 N -0.32 -9.63 12.57 -56.98 -0.72 -10.35 16 25 H 0.07 2.09 7.16 -2.39 -0.02 2.07 16 26 H 0.08 3.37 5.95 -2.38 -0.01 3.36 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.10 3.08 7.57 -2.39 -0.02 3.06 16 29 H 0.09 3.06 8.11 -2.39 -0.02 3.04 16 30 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 31 H 0.12 3.92 6.96 -2.39 -0.02 3.91 16 32 H 0.08 3.16 6.72 -2.39 -0.02 3.14 16 33 H 0.12 3.06 8.14 -2.38 -0.02 3.04 16 34 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.20 3.87 7.26 -2.91 -0.02 3.85 16 37 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -65.96 331.13 4.46 -61.50 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.09 Total: 21.61 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.43 Total: -3.63 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -3.35 Total: -93.31 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.04 Total: -31.50 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.69 Total: -0.93 kcal Total: -65.96 4.46 -61.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592587563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.717 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds