Wall clock time and date at job start Tue Mar 31 2020 23:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48495 * 109.47173 * 239.99874 * 3 2 1 5 5 H 1.48502 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46738 * 119.99865 * 3 2 1 7 7 C 1.37883 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46818 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46830 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47150 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.46977 * 54.99802 * 12 11 10 14 14 N 1.46904 * 109.47110 * 295.00444 * 12 11 10 15 15 C 1.50701 * 109.47141 * 175.00077 * 12 11 10 16 16 O 1.21276 * 119.99596 * 100.00199 * 15 12 11 17 17 N 1.34774 * 119.99995 * 279.99947 * 15 12 11 18 18 C 1.39410 * 119.99882 * 174.91054 * 17 15 12 19 19 C 1.38992 * 119.68917 * 185.10164 * 18 17 15 20 20 C 1.38469 * 119.08767 * 179.76935 * 19 18 17 21 21 Br 1.89106 * 120.76599 * 180.26071 * 20 19 18 22 22 C 1.38958 * 118.47346 * 0.49491 * 20 19 18 23 23 C 1.38026 * 119.29435 * 359.74638 * 22 20 19 24 24 N 1.31946 * 120.86528 * 0.02562 * 23 22 20 25 25 H 0.96995 * 120.00425 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47010 * 59.99964 * 9 7 2 27 27 H 1.08997 * 109.47222 * 300.00196 * 9 7 2 28 28 H 1.09000 * 109.47462 * 60.00115 * 10 9 7 29 29 H 1.08997 * 109.47281 * 300.00034 * 10 9 7 30 30 H 1.09004 * 109.47355 * 60.00038 * 11 10 9 31 31 H 1.08997 * 109.47320 * 300.00137 * 11 10 9 32 32 H 1.00900 * 110.99790 * 176.04212 * 14 12 11 33 33 H 1.00895 * 110.99612 * 299.99717 * 14 12 11 34 34 H 0.96999 * 120.00179 * 354.90934 * 17 15 12 35 35 H 1.08004 * 120.45531 * 359.97438 * 19 18 17 36 36 H 1.08003 * 120.34969 * 179.77050 * 22 20 19 37 37 H 1.07999 * 119.56778 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4745 -6.1500 -0.0024 13 1 3.1586 -6.0435 0.8395 14 7 3.2378 -6.1413 -1.2576 15 6 1.7251 -7.4517 0.1209 16 8 1.5129 -8.1249 -0.8653 17 7 1.2907 -7.8675 1.3270 18 6 0.5068 -9.0160 1.4276 19 6 -0.0260 -9.3801 2.6586 20 6 -0.8068 -10.5205 2.7433 21 35 -1.5615 -11.0559 4.3926 22 6 -1.0191 -11.2653 1.5896 23 6 -0.4541 -10.8465 0.4019 24 7 0.2818 -9.7526 0.3511 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 2.8713 -3.6048 0.8890 29 1 2.8727 -3.6039 -0.8909 30 1 0.8540 -5.0447 -0.8923 31 1 0.8532 -5.0450 0.8877 32 1 3.9455 -6.8605 -1.2554 33 1 2.6256 -6.2388 -2.0536 34 1 1.5236 -7.3678 2.1251 35 1 0.1635 -8.7800 3.5363 36 1 -1.6200 -12.1621 1.6218 37 1 -0.6165 -11.4218 -0.4975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691641870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:27 Heat of formation + Delta-G solvation = -0.391222 kcal Electronic energy + Delta-G solvation = -20517.225152 eV Core-core repulsion = 17147.602213 eV Total energy + Delta-G solvation = -3369.622939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17450 -39.54481 -35.92316 -35.24754 -33.66371 -33.35398 -31.38893 -30.69398 -30.37082 -27.99420 -25.56879 -24.06778 -23.55727 -22.07985 -20.28527 -20.05740 -18.39146 -17.49865 -16.65367 -16.41252 -16.08900 -15.80997 -15.48020 -15.01478 -14.52194 -14.46235 -14.06172 -13.93809 -13.50838 -13.06507 -12.67862 -12.43238 -12.04899 -11.82256 -11.54997 -11.18912 -10.99536 -10.88376 -10.76088 -10.71446 -10.45434 -10.43000 -9.78064 -9.68896 -9.57552 -9.24775 -9.07547 -8.70584 -8.63149 -8.30382 -5.96072 -3.97948 0.60212 0.63225 0.97261 2.42183 2.58346 3.35940 3.40148 3.42778 3.43543 3.99796 4.38141 4.48849 4.49338 4.51336 4.57201 4.83590 5.06484 5.06951 5.17702 5.30588 5.39687 5.48002 5.76969 5.86346 6.04842 6.28850 6.38526 6.77856 6.79149 6.97343 7.07822 7.21532 7.43308 7.62342 7.73108 7.88271 7.98935 8.05088 8.48098 9.09526 9.65857 11.15338 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002120 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.796361 B =13206.996751 C =14443.813560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.105 4.105 12 C 0.081 3.919 13 H 0.104 0.896 14 N -0.809 5.809 15 C 0.474 3.526 16 O -0.478 6.478 17 N -0.659 5.659 18 C 0.375 3.625 19 C -0.184 4.184 20 C -0.019 4.019 21 Br -0.030 7.030 22 C -0.184 4.184 23 C 0.143 3.857 24 N -0.467 5.467 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.340 0.660 33 H 0.352 0.648 34 H 0.421 0.579 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -27.656 9.039 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.143 4.143 12 C -0.035 4.035 13 H 0.122 0.878 14 N -0.337 5.337 15 C 0.258 3.742 16 O -0.346 6.346 17 N -0.306 5.306 18 C 0.142 3.858 19 C -0.210 4.210 20 C -0.107 4.107 21 Br 0.056 6.944 22 C -0.208 4.208 23 C -0.016 4.016 24 N -0.182 5.182 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.259 0.741 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.748 -27.092 8.264 28.379 hybrid contribution -0.182 0.020 0.858 0.877 sum -1.929 -27.072 9.122 28.633 Atomic orbital electron populations 1.69952 1.06064 1.26620 1.51079 1.25033 0.94829 0.99231 0.95462 0.86672 0.79578 0.83214 0.78615 1.20230 1.21382 1.20284 1.21236 0.93036 0.91087 1.50246 0.92691 1.19116 0.94088 0.91610 0.96948 1.21543 0.98781 0.92146 1.01255 1.21686 0.96501 0.93958 1.02146 1.21833 0.95851 0.90106 0.95705 0.87850 1.59043 1.17266 1.54265 1.03174 1.23037 0.79598 0.89176 0.82354 1.90783 1.52621 1.55322 1.35915 1.43991 1.50247 1.24449 1.11952 1.18538 0.90437 0.87777 0.89038 1.21444 1.02148 0.98926 0.98439 1.21911 0.98864 0.96901 0.93045 1.96805 1.82318 1.90707 1.24611 1.22049 1.04160 1.02222 0.92346 1.22789 0.90349 0.91217 0.97221 1.67735 1.15750 1.05760 1.28933 0.93028 0.96773 0.96970 0.93585 0.91737 0.91768 0.91849 0.84815 0.83362 0.74116 0.83486 0.83728 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -1.96 5.04 -26.73 -0.13 -2.10 16 11 C -0.10 -1.65 4.84 -26.73 -0.13 -1.78 16 12 C 0.08 1.03 3.15 -68.86 -0.22 0.81 16 13 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 14 N -0.81 -10.44 8.44 -5.65 -0.05 -10.48 16 15 C 0.47 6.21 7.03 -10.99 -0.08 6.13 16 16 O -0.48 -7.77 14.52 5.56 0.08 -7.69 16 17 N -0.66 -7.02 5.39 -11.43 -0.06 -7.08 16 18 C 0.37 4.33 7.42 -154.70 -1.15 3.18 16 19 C -0.18 -1.70 9.72 -39.22 -0.38 -2.08 16 20 C -0.02 -0.17 6.27 -39.23 -0.25 -0.41 16 21 Br -0.03 -0.23 33.77 -68.01 -2.30 -2.53 16 22 C -0.18 -1.50 9.89 -39.39 -0.39 -1.89 16 23 C 0.14 1.38 11.17 -17.58 -0.20 1.19 16 24 N -0.47 -6.09 7.89 -12.38 -0.10 -6.19 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.34 3.77 9.06 -39.29 -0.36 3.41 16 33 H 0.35 4.77 8.58 -39.29 -0.34 4.43 16 34 H 0.42 3.08 8.70 -40.82 -0.36 2.72 16 35 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 36 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 341.39 15.07 5.14 5.14 Total: -1.00 -34.18 341.39 -9.83 -44.01 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.80 Total: 4.59 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.47 Total: -10.09 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.53 Total: -50.18 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.30 Total: -2.53 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.18 -9.83 -44.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691641870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.622 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds