Wall clock time and date at job start Tue Mar 31 2020 23:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48495 * 109.47173 * 239.99874 * 3 2 1 5 5 H 1.48502 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46738 * 119.99865 * 3 2 1 7 7 C 1.37883 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99744 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46818 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46830 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47150 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.46977 * 54.99802 * 12 11 10 14 14 N 1.46904 * 109.47110 * 295.00444 * 12 11 10 15 15 C 1.50701 * 109.47141 * 175.00077 * 12 11 10 16 16 O 1.21276 * 119.99596 * 100.00199 * 15 12 11 17 17 N 1.34774 * 119.99995 * 279.99947 * 15 12 11 18 18 C 1.39410 * 119.99882 * 174.91054 * 17 15 12 19 19 C 1.38992 * 119.68917 * 185.10164 * 18 17 15 20 20 C 1.38469 * 119.08767 * 179.76935 * 19 18 17 21 21 Br 1.89106 * 120.76599 * 180.26071 * 20 19 18 22 22 C 1.38958 * 118.47346 * 0.49491 * 20 19 18 23 23 C 1.38026 * 119.29435 * 359.74638 * 22 20 19 24 24 N 1.31946 * 120.86528 * 0.02562 * 23 22 20 25 25 H 0.96995 * 120.00425 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47010 * 59.99964 * 9 7 2 27 27 H 1.08997 * 109.47222 * 300.00196 * 9 7 2 28 28 H 1.09000 * 109.47462 * 60.00115 * 10 9 7 29 29 H 1.08997 * 109.47281 * 300.00034 * 10 9 7 30 30 H 1.09004 * 109.47355 * 60.00038 * 11 10 9 31 31 H 1.08997 * 109.47320 * 300.00137 * 11 10 9 32 32 H 1.00900 * 110.99790 * 176.04212 * 14 12 11 33 33 H 1.00895 * 110.99612 * 299.99717 * 14 12 11 34 34 H 0.96999 * 120.00179 * 354.90934 * 17 15 12 35 35 H 1.08004 * 120.45531 * 359.97438 * 19 18 17 36 36 H 1.08003 * 120.34969 * 179.77050 * 22 20 19 37 37 H 1.07999 * 119.56778 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4745 -6.1500 -0.0024 13 1 3.1586 -6.0435 0.8395 14 7 3.2378 -6.1413 -1.2576 15 6 1.7251 -7.4517 0.1209 16 8 1.5129 -8.1249 -0.8653 17 7 1.2907 -7.8675 1.3270 18 6 0.5068 -9.0160 1.4276 19 6 -0.0260 -9.3801 2.6586 20 6 -0.8068 -10.5205 2.7433 21 35 -1.5615 -11.0559 4.3926 22 6 -1.0191 -11.2653 1.5896 23 6 -0.4541 -10.8465 0.4019 24 7 0.2818 -9.7526 0.3511 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 2.8713 -3.6048 0.8890 29 1 2.8727 -3.6039 -0.8909 30 1 0.8540 -5.0447 -0.8923 31 1 0.8532 -5.0450 0.8877 32 1 3.9455 -6.8605 -1.2554 33 1 2.6256 -6.2388 -2.0536 34 1 1.5236 -7.3678 2.1251 35 1 0.1635 -8.7800 3.5363 36 1 -1.6200 -12.1621 1.6218 37 1 -0.6165 -11.4218 -0.4975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691641870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:27 Heat of formation + Delta-G solvation = -23.823321 kcal Electronic energy + Delta-G solvation = -20518.241244 eV Core-core repulsion = 17147.602213 eV Total energy + Delta-G solvation = -3370.639031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01542 -40.45872 -37.20618 -36.19755 -35.24056 -34.36425 -33.12275 -31.46669 -31.05388 -29.54874 -27.01432 -24.97699 -24.74951 -23.31799 -21.73646 -21.23115 -19.22374 -18.45284 -18.42359 -17.33294 -17.18472 -16.78278 -16.47663 -16.43857 -15.88669 -15.56815 -15.19496 -14.90881 -14.53386 -14.27635 -14.17932 -13.65716 -13.31708 -13.12919 -12.86366 -12.72343 -12.48382 -12.40177 -12.19201 -11.83028 -11.66936 -11.45578 -11.37517 -11.23867 -11.00871 -10.51255 -10.46455 -10.43570 -9.69201 -9.47233 -8.16100 -6.26515 -0.11568 -0.09963 0.30666 1.42043 1.45301 1.45531 1.53100 1.76887 2.44264 2.67526 3.17060 3.21359 3.49600 3.68564 3.80330 3.86750 3.96554 4.05424 4.14424 4.40534 4.51454 4.52495 4.67524 4.83261 4.92283 5.04538 5.14363 5.27836 5.35848 5.53202 5.62051 5.85741 5.94481 5.96156 6.12230 6.31379 6.45024 6.78437 6.91591 7.14901 7.42583 8.95525 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016754 B = 0.002120 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.796361 B =13206.996751 C =14443.813560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.083 4.083 11 C -0.095 4.095 12 C 0.093 3.907 13 H 0.132 0.868 14 N -0.816 5.816 15 C 0.478 3.522 16 O -0.514 6.514 17 N -0.649 5.649 18 C 0.349 3.651 19 C -0.177 4.177 20 C -0.030 4.030 21 Br -0.016 7.016 22 C -0.171 4.171 23 C 0.130 3.870 24 N -0.507 5.507 25 H 0.262 0.738 26 H -0.018 1.018 27 H -0.008 1.008 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.351 0.649 33 H 0.346 0.654 34 H 0.436 0.564 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 -28.331 10.413 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.016 4.016 10 C -0.121 4.121 11 C -0.134 4.134 12 C -0.023 4.023 13 H 0.149 0.851 14 N -0.345 5.345 15 C 0.263 3.737 16 O -0.385 6.385 17 N -0.298 5.298 18 C 0.117 3.883 19 C -0.202 4.202 20 C -0.118 4.118 21 Br 0.069 6.931 22 C -0.194 4.194 23 C -0.028 4.028 24 N -0.223 5.223 25 H 0.071 0.929 26 H 0.001 0.999 27 H 0.011 0.989 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.276 0.724 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.874 -27.788 9.682 29.440 hybrid contribution -0.534 0.142 0.478 0.731 sum -1.408 -27.646 10.161 29.487 Atomic orbital electron populations 1.70093 1.07834 1.27689 1.52068 1.25993 0.95739 1.03380 0.94944 0.85533 0.78277 0.78203 0.79241 1.19368 1.21070 1.18879 1.21718 0.93615 0.92440 1.49958 0.92071 1.19056 0.94602 0.93538 0.94411 1.21280 0.97498 0.91833 1.01478 1.21479 0.96712 0.93342 1.01822 1.21679 0.95395 0.88602 0.96645 0.85067 1.59057 1.17479 1.54859 1.03085 1.22949 0.79190 0.88966 0.82579 1.90768 1.54060 1.56440 1.37278 1.43804 1.49716 1.24475 1.11809 1.18733 0.91622 0.88225 0.89699 1.21627 1.01307 0.99085 0.98227 1.22128 0.98883 0.96949 0.93884 1.96823 1.82042 1.90529 1.23685 1.22336 1.03039 1.02495 0.91520 1.23178 0.90187 0.90780 0.98692 1.67655 1.17133 1.07167 1.30330 0.92917 0.99931 0.98925 0.92210 0.92451 0.93708 0.90756 0.83554 0.83986 0.72361 0.81436 0.81142 0.79601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.08 -3.26 5.04 30.59 0.15 -3.10 16 11 C -0.10 -2.97 4.84 30.60 0.15 -2.82 16 12 C 0.09 2.24 3.15 44.17 0.14 2.37 16 13 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 14 N -0.82 -20.45 8.44 -171.78 -1.45 -21.90 16 15 C 0.48 12.23 7.03 87.66 0.62 12.85 16 16 O -0.51 -16.84 14.52 -3.02 -0.04 -16.88 16 17 N -0.65 -13.15 5.39 -308.47 -1.66 -14.81 16 18 C 0.35 7.79 7.42 132.90 0.99 8.77 16 19 C -0.18 -2.99 9.72 22.51 0.22 -2.77 16 20 C -0.03 -0.48 6.27 22.50 0.14 -0.34 16 21 Br -0.02 -0.22 33.77 -20.37 -0.69 -0.91 16 22 C -0.17 -2.47 9.89 22.39 0.22 -2.25 16 23 C 0.13 2.39 11.17 84.63 0.95 3.34 16 24 N -0.51 -13.09 7.89 -193.09 -1.52 -14.61 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.32 7.75 -2.39 -0.02 2.31 16 30 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.35 7.42 9.06 -89.69 -0.81 6.60 16 33 H 0.35 9.44 8.58 -89.70 -0.77 8.67 16 34 H 0.44 5.59 8.70 -92.71 -0.81 4.78 16 35 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -74.68 341.39 0.09 -74.59 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -1.27 Total: 18.30 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.41 Total: -12.95 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -4.35 Total: -108.63 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.04 Total: -16.88 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.69 Total: -0.91 kcal Total: -74.68 0.09 -74.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691641870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -74.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds